Wall clock time and date at job start Sat Apr 11 2020 07:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46661 * 60.00586 * 14 12 10 16 16 H 1.48501 * 109.47391 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47355 * 300.00441 * 14 12 10 18 18 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 19 19 N 1.46500 * 109.47129 * 65.00299 * 18 2 1 20 20 C 1.34771 * 120.00026 * 179.97438 * 19 18 2 21 21 O 1.21282 * 119.99801 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00222 * 179.97438 * 20 19 18 23 23 C 1.52995 * 112.84871 * 48.80541 * 22 20 19 24 24 F 1.39896 * 109.47335 * 189.66804 * 23 22 20 25 25 C 1.53784 * 113.61509 * 277.49599 * 22 20 19 26 26 C 1.53773 * 87.08119 * 220.01755 * 25 22 20 27 27 C 1.53782 * 87.08469 * 25.43360 * 26 25 22 28 28 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 29 29 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 35 35 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 36 36 H 0.96991 * 119.99795 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.46502 * 184.99774 * 18 2 1 38 38 H 1.08996 * 109.47343 * 304.99842 * 18 2 1 39 39 H 0.97004 * 120.00029 * 359.97438 * 19 18 2 40 40 H 1.09007 * 109.47392 * 309.66665 * 23 22 20 41 41 H 1.09006 * 109.47495 * 69.66520 * 23 22 20 42 42 H 1.09001 * 113.61310 * 334.57204 * 25 22 20 43 43 H 1.09008 * 113.60923 * 105.46845 * 25 22 20 44 44 H 1.09001 * 113.61949 * 270.88640 * 26 25 22 45 45 H 1.09004 * 113.61725 * 139.98191 * 26 25 22 46 46 H 1.08996 * 113.61648 * 220.01840 * 27 26 25 47 47 H 1.08997 * 113.61515 * 89.11136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9912 -0.4163 3.6661 7 8 2.6212 -1.4465 3.7795 8 6 1.5872 0.3586 4.8939 9 16 2.1855 -0.4977 6.3720 10 6 1.5910 0.5947 7.6201 11 1 1.0389 1.4809 7.3439 12 6 1.8314 0.3158 8.9584 13 7 2.5038 -0.7645 9.2951 14 14 1.2018 1.4743 10.2816 15 1 -0.2778 1.5676 10.1947 16 1 1.5879 0.9555 11.6184 17 1 1.7952 2.8211 10.0836 18 6 2.0400 -0.7213 -1.2493 19 7 1.6525 0.0354 -2.4424 20 6 1.9964 -0.4129 -3.6659 21 8 2.6272 -1.4426 -3.7792 22 6 1.5973 0.3651 -4.8933 23 6 1.9305 1.8545 -4.7869 24 9 1.3398 2.5418 -5.8527 25 6 0.1587 0.0854 -5.3592 26 6 0.7012 0.1212 -6.7976 27 6 2.0649 -0.2782 -6.2095 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 2.0215 1.3575 4.8522 35 1 0.5007 0.4364 4.9332 36 1 2.6721 -0.9592 10.2303 37 1 3.1264 -0.7994 -1.2056 38 1 1.6054 -1.7198 -1.2953 39 1 1.1483 0.8592 -2.3518 40 1 1.5468 2.2463 -3.8448 41 1 3.0116 1.9885 -4.8227 42 1 -0.2155 -0.8930 -5.0577 43 1 -0.5378 0.8935 -5.1349 44 1 0.6923 1.1160 -7.2430 45 1 0.2665 -0.6385 -7.4473 46 1 2.9073 0.2362 -6.6718 47 1 2.2119 -1.3560 -6.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721580893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:46 Heat of formation + Delta-G solvation = -119.272780 kcal Electronic energy + Delta-G solvation = -27133.479466 eV Core-core repulsion = 22971.037093 eV Total energy + Delta-G solvation = -4162.442373 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.151 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.37390 -40.94076 -39.39905 -38.26264 -36.97402 -34.66991 -32.53632 -32.43979 -30.02528 -29.32791 -27.27686 -26.31269 -25.81825 -25.39241 -24.40697 -21.46767 -21.03170 -20.43642 -19.43715 -18.29740 -17.80215 -16.98283 -16.62174 -16.40618 -16.32715 -15.96760 -15.82498 -15.50448 -15.21840 -14.82448 -14.74200 -14.54168 -14.09062 -13.88039 -13.76969 -13.22172 -13.18112 -13.02935 -12.98267 -12.82533 -12.65938 -12.57506 -11.97306 -11.77475 -11.61874 -11.59143 -11.44246 -11.30334 -11.06525 -11.05470 -10.88669 -10.78868 -10.78074 -10.18219 -9.84554 -9.57214 -9.45497 -9.08347 -8.94457 -8.26288 -6.52251 -6.23254 -3.94257 2.07360 2.55737 3.02908 3.05962 3.21899 3.26275 3.29667 3.60297 3.67663 3.80656 3.82818 4.06149 4.18697 4.25261 4.34608 4.36528 4.45329 4.46516 4.59577 4.87118 4.93219 4.96869 5.09990 5.11764 5.15979 5.22706 5.25738 5.29861 5.39173 5.39883 5.47013 5.49128 5.57801 5.58419 5.62995 5.81489 5.83754 5.85749 5.88695 5.94939 6.10117 6.54124 6.94463 7.57199 7.64019 7.70080 8.33028 8.56785 9.21811 10.84099 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.001481 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.915514 B =18900.605253 C =19394.485335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 H 0.085 0.915 4 C 0.129 3.871 5 N -0.738 5.738 6 C 0.531 3.469 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.060 6.060 10 C -0.537 4.537 11 H 0.072 0.928 12 C 0.074 3.926 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.124 3.876 19 N -0.726 5.726 20 C 0.532 3.468 21 O -0.528 6.528 22 C -0.149 4.149 23 C 0.091 3.909 24 F -0.204 7.204 25 C -0.115 4.115 26 C -0.145 4.145 27 C -0.110 4.110 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.399 0.601 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.096 0.904 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.667 7.061 -32.165 33.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.134 4.134 3 H 0.103 0.897 4 C 0.004 3.996 5 N -0.393 5.393 6 C 0.317 3.683 7 O -0.390 6.390 8 C -0.304 4.304 9 S 0.167 5.833 10 C -0.686 4.686 11 H 0.090 0.910 12 C -0.135 4.135 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.199 1.199 16 H -0.208 1.208 17 H -0.199 1.199 18 C 0.001 3.999 19 N -0.379 5.379 20 C 0.317 3.683 21 O -0.403 6.403 22 C -0.153 4.153 23 C 0.035 3.965 24 F -0.185 7.185 25 C -0.153 4.153 26 C -0.183 4.183 27 C -0.148 4.148 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.234 0.766 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.115 0.885 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -4.070 4.462 -31.910 32.476 hybrid contribution -1.647 2.780 0.829 3.336 sum -5.717 7.241 -31.081 32.422 Atomic orbital electron populations 1.21900 0.93964 1.02950 1.01983 1.21601 0.97143 1.00727 0.93929 0.89700 1.21159 1.00315 0.95421 0.82727 1.45964 1.59857 1.28054 1.05450 1.20315 0.78712 0.85466 0.83770 1.90714 1.38278 1.23817 1.86181 1.23530 1.04754 1.03486 0.98641 1.85418 1.72823 1.32970 0.92087 1.22828 1.41644 1.11313 0.92775 0.90978 1.24992 0.94843 0.95777 0.97924 1.70005 1.37431 1.24513 1.18289 0.86224 0.79183 0.80320 0.79762 1.19946 1.20789 1.19950 1.21350 1.00683 0.95463 0.82452 1.46050 1.58052 1.27923 1.05848 1.20022 0.78926 0.85615 0.83713 1.90737 1.38986 1.24265 1.86301 1.22873 1.01334 0.95917 0.95131 1.21607 0.99019 0.87915 0.87918 1.92756 1.86158 1.80551 1.59012 1.22843 0.92789 1.02891 0.96783 1.23019 0.96118 1.03091 0.96027 1.22860 0.97863 1.02166 0.91885 0.91792 0.92591 0.91861 0.91218 0.91150 0.76853 0.89241 0.89242 0.92101 0.90684 0.90694 0.76553 0.90198 0.89589 0.89269 0.90252 0.88539 0.90952 0.90732 0.88284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 8.94 37.16 0.33 -0.51 16 2 C -0.11 -0.71 2.46 -90.62 -0.22 -0.93 16 3 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 4 C 0.13 1.30 5.06 -4.04 -0.02 1.28 16 5 N -0.74 -8.84 5.28 -60.30 -0.32 -9.16 16 6 C 0.53 9.51 7.85 -10.98 -0.09 9.43 16 7 O -0.52 -11.51 15.86 5.55 0.09 -11.42 16 8 C -0.15 -3.00 6.16 36.01 0.22 -2.77 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 11 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.00 13.22 55.49 0.73 -25.26 16 14 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C 0.12 0.87 5.06 -4.04 -0.02 0.85 16 19 N -0.73 -4.15 5.17 -60.29 -0.31 -4.46 16 20 C 0.53 4.23 6.93 -10.99 -0.08 4.15 16 21 O -0.53 -6.44 15.90 5.56 0.09 -6.35 16 22 C -0.15 -0.85 1.26 -154.85 -0.19 -1.05 16 23 C 0.09 0.38 6.96 37.15 0.26 0.64 16 24 F -0.20 -1.23 14.57 2.25 0.03 -1.19 16 25 C -0.12 -0.59 6.96 -25.92 -0.18 -0.77 16 26 C -0.15 -0.76 7.56 -25.92 -0.20 -0.96 16 27 C -0.11 -0.70 6.97 -25.92 -0.18 -0.88 16 28 H 0.06 0.37 7.18 -51.93 -0.37 0.00 16 29 H 0.06 0.22 7.18 -51.93 -0.37 -0.15 16 30 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.40 3.53 7.65 -40.82 -0.31 3.22 16 34 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 35 H 0.09 1.60 8.14 -51.92 -0.42 1.18 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.40 1.27 6.56 -40.82 -0.27 1.00 16 40 H 0.08 0.17 7.04 -51.93 -0.37 -0.19 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.09 0.50 8.09 -51.93 -0.42 0.08 16 43 H 0.08 0.34 8.06 -51.92 -0.42 -0.08 16 44 H 0.10 0.52 6.44 -51.93 -0.33 0.18 16 45 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 47 H 0.10 0.77 7.43 -51.93 -0.39 0.39 16 LS Contribution 399.89 15.07 6.03 6.03 Total: -1.00 -36.47 399.89 -8.51 -44.98 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -7.44 Total: -1.11 kcal Atomic # 6 Polarization: -4.21 SS G_CDS: -0.17 Total: -4.38 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 0.10 Total: -38.89 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: 0.18 Total: -17.77 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.03 Total: -1.19 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.47 -8.51 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721580893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.298 kcal (2) G-P(sol) polarization free energy of solvation -36.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds