Wall clock time and date at job start Sat Apr 11 2020 07:48:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.46998 * 2 1 4 4 C 1.52996 * 109.46909 * 120.00202 * 2 1 3 5 5 N 1.46498 * 109.47059 * 294.99709 * 4 2 1 6 6 C 1.34777 * 119.99828 * 179.72339 * 5 4 2 7 7 O 1.21283 * 120.00222 * 0.28168 * 6 5 4 8 8 C 1.50703 * 120.00290 * 180.27728 * 6 5 4 9 9 S 1.81000 * 109.47389 * 180.02562 * 8 6 5 10 10 C 1.76198 * 99.99715 * 179.97438 * 9 8 6 11 11 H 1.08001 * 120.00516 * 0.02562 * 10 9 8 12 12 C 1.38803 * 119.99710 * 179.97438 * 10 9 8 13 13 N 1.31634 * 120.00163 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 120.00011 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46661 * 60.00586 * 14 12 10 16 16 H 1.48501 * 109.47391 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.47355 * 300.00441 * 14 12 10 18 18 C 1.53004 * 109.46816 * 240.00146 * 2 1 3 19 19 N 1.46500 * 109.47129 * 65.00299 * 18 2 1 20 20 C 1.34771 * 120.00026 * 179.97438 * 19 18 2 21 21 O 1.21282 * 119.99801 * 359.97438 * 20 19 18 22 22 C 1.50700 * 120.00222 * 179.97438 * 20 19 18 23 23 C 1.52995 * 112.84871 * 48.80541 * 22 20 19 24 24 F 1.39896 * 109.47335 * 189.66804 * 23 22 20 25 25 C 1.53784 * 113.61509 * 277.49599 * 22 20 19 26 26 C 1.53773 * 87.08119 * 220.01755 * 25 22 20 27 27 C 1.53782 * 87.08469 * 25.43360 * 26 25 22 28 28 H 1.08995 * 109.47053 * 300.00107 * 1 2 3 29 29 H 1.09001 * 109.46930 * 59.99747 * 1 2 3 30 30 H 1.09000 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47066 * 174.99977 * 4 2 1 32 32 H 1.08994 * 109.46974 * 55.00124 * 4 2 1 33 33 H 0.97001 * 120.00384 * 0.02562 * 5 4 2 34 34 H 1.08998 * 109.46954 * 300.00581 * 8 6 5 35 35 H 1.09002 * 109.46946 * 59.99717 * 8 6 5 36 36 H 0.96991 * 119.99795 * 179.97438 * 13 12 10 37 37 H 1.09005 * 109.46502 * 184.99774 * 18 2 1 38 38 H 1.08996 * 109.47343 * 304.99842 * 18 2 1 39 39 H 0.97004 * 120.00029 * 359.97438 * 19 18 2 40 40 H 1.09007 * 109.47392 * 309.66665 * 23 22 20 41 41 H 1.09006 * 109.47495 * 69.66520 * 23 22 20 42 42 H 1.09001 * 113.61310 * 334.57204 * 25 22 20 43 43 H 1.09008 * 113.60923 * 105.46845 * 25 22 20 44 44 H 1.09001 * 113.61949 * 270.88640 * 26 25 22 45 45 H 1.09004 * 113.61725 * 139.98191 * 26 25 22 46 46 H 1.08996 * 113.61648 * 220.01840 * 27 26 25 47 47 H 1.08997 * 113.61515 * 89.11136 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6525 0.0353 2.4423 6 6 1.9912 -0.4163 3.6661 7 8 2.6212 -1.4465 3.7795 8 6 1.5872 0.3586 4.8939 9 16 2.1855 -0.4977 6.3720 10 6 1.5910 0.5947 7.6201 11 1 1.0389 1.4809 7.3439 12 6 1.8314 0.3158 8.9584 13 7 2.5038 -0.7645 9.2951 14 14 1.2018 1.4743 10.2816 15 1 -0.2778 1.5676 10.1947 16 1 1.5879 0.9555 11.6184 17 1 1.7952 2.8211 10.0836 18 6 2.0400 -0.7213 -1.2493 19 7 1.6525 0.0354 -2.4424 20 6 1.9964 -0.4129 -3.6659 21 8 2.6272 -1.4426 -3.7792 22 6 1.5973 0.3651 -4.8933 23 6 1.9305 1.8545 -4.7869 24 9 1.3398 2.5418 -5.8527 25 6 0.1587 0.0854 -5.3592 26 6 0.7012 0.1212 -6.7976 27 6 2.0649 -0.2782 -6.2095 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1264 -0.7995 1.2056 32 1 1.6054 -1.7198 1.2950 33 1 1.1483 0.8591 2.3518 34 1 2.0215 1.3575 4.8522 35 1 0.5007 0.4364 4.9332 36 1 2.6721 -0.9592 10.2303 37 1 3.1264 -0.7994 -1.2056 38 1 1.6054 -1.7198 -1.2953 39 1 1.1483 0.8592 -2.3518 40 1 1.5468 2.2463 -3.8448 41 1 3.0116 1.9885 -4.8227 42 1 -0.2155 -0.8930 -5.0577 43 1 -0.5378 0.8935 -5.1349 44 1 0.6923 1.1160 -7.2430 45 1 0.2665 -0.6385 -7.4473 46 1 2.9073 0.2362 -6.6718 47 1 2.2119 -1.3560 -6.1406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721580893.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:46 Heat of formation + Delta-G solvation = -145.149755 kcal Electronic energy + Delta-G solvation = -27134.601576 eV Core-core repulsion = 22971.037093 eV Total energy + Delta-G solvation = -4163.564483 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 346.151 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -48.75518 -41.52787 -40.67574 -38.87943 -37.78634 -35.61511 -34.57456 -33.45637 -30.96557 -30.23283 -27.87332 -27.65858 -26.82283 -26.41156 -24.95285 -22.08511 -21.78736 -21.61854 -20.03147 -19.73002 -18.75553 -17.74079 -17.71836 -17.10525 -16.96612 -16.86811 -16.77658 -16.57880 -16.33382 -16.06478 -15.75298 -15.39576 -15.23653 -14.79339 -14.55412 -14.38957 -14.29090 -13.96937 -13.70419 -13.49530 -13.40457 -13.28039 -13.16013 -13.10811 -12.85442 -12.63267 -12.29107 -12.17737 -12.14699 -11.97062 -11.86678 -11.73360 -11.31606 -11.19091 -11.11898 -11.00328 -10.79775 -10.26384 -10.19480 -10.11006 -8.65990 -8.33537 -6.11893 1.27659 1.44817 1.46063 1.47832 1.57056 1.62629 1.97206 2.28270 2.38408 3.00631 3.17167 3.33210 3.37562 3.40511 3.61576 3.76334 3.77703 3.82881 3.84765 4.04151 4.10979 4.28339 4.31723 4.39687 4.47654 4.50181 4.52730 4.56109 4.72745 4.76106 4.77151 4.81951 4.88259 4.95505 4.96216 5.05094 5.13714 5.16540 5.29237 5.38562 5.42492 5.44782 5.45372 6.20473 6.44135 6.52065 7.07652 7.14190 7.26364 8.75373 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.031141 B = 0.001481 C = 0.001443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.915514 B =18900.605253 C =19394.485335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.095 4.095 3 H 0.110 0.890 4 C 0.125 3.875 5 N -0.707 5.707 6 C 0.532 3.468 7 O -0.568 6.568 8 C -0.129 4.129 9 S -0.156 6.156 10 C -0.547 4.547 11 H 0.085 0.915 12 C 0.013 3.987 13 N -0.912 5.912 14 Si 0.999 3.001 15 H -0.261 1.261 16 H -0.280 1.280 17 H -0.262 1.262 18 C 0.127 3.873 19 N -0.709 5.709 20 C 0.532 3.468 21 O -0.577 6.577 22 C -0.142 4.142 23 C 0.089 3.911 24 F -0.212 7.212 25 C -0.111 4.111 26 C -0.140 4.140 27 C -0.120 4.120 28 H 0.067 0.933 29 H 0.079 0.921 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.418 0.582 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.271 0.729 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.416 0.584 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.100 0.900 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.609 10.457 -33.033 35.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 H 0.128 0.872 4 C 0.001 3.999 5 N -0.362 5.362 6 C 0.318 3.682 7 O -0.447 6.447 8 C -0.280 4.280 9 S 0.071 5.929 10 C -0.695 4.695 11 H 0.103 0.897 12 C -0.192 4.192 13 N -0.548 5.548 14 Si 0.820 3.180 15 H -0.186 1.186 16 H -0.206 1.206 17 H -0.186 1.186 18 C 0.003 3.997 19 N -0.362 5.362 20 C 0.318 3.682 21 O -0.456 6.456 22 C -0.146 4.146 23 C 0.034 3.966 24 F -0.193 7.193 25 C -0.149 4.149 26 C -0.177 4.177 27 C -0.157 4.157 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.256 0.744 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.254 0.746 40 H 0.126 0.874 41 H 0.110 0.890 42 H 0.100 0.900 43 H 0.114 0.886 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.095 0.905 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.064 7.935 -32.823 34.309 hybrid contribution -1.043 1.701 0.945 2.208 sum -7.107 9.636 -31.879 34.053 Atomic orbital electron populations 1.21927 0.92905 1.02624 1.03386 1.21431 0.97729 1.01121 0.91082 0.87156 1.21283 0.99859 0.95321 0.83439 1.45642 1.58199 1.28332 1.04044 1.20085 0.78467 0.84674 0.84973 1.90706 1.40954 1.26051 1.86974 1.23369 1.05791 1.03381 0.95459 1.85630 1.74339 1.35980 0.96914 1.23186 1.41569 1.11481 0.93243 0.89740 1.26135 0.94823 0.97519 1.00683 1.70182 1.39035 1.26773 1.18834 0.85003 0.78996 0.77969 0.76019 1.18603 1.20551 1.18607 1.21207 0.99966 0.95256 0.83292 1.45870 1.57365 1.28120 1.04808 1.20402 0.78046 0.85045 0.84691 1.90723 1.41345 1.26508 1.87004 1.22870 1.01594 0.96738 0.93413 1.21755 0.99614 0.86473 0.88732 1.92741 1.86337 1.80553 1.59686 1.22836 0.92579 1.03111 0.96346 1.22990 0.95206 1.03245 0.96302 1.22861 0.98778 1.01078 0.93018 0.91368 0.90214 0.93148 0.92263 0.92498 0.74438 0.87020 0.87038 0.92037 0.91857 0.92120 0.74566 0.87401 0.88982 0.89972 0.88633 0.88211 0.90695 0.90517 0.90342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 8.94 71.98 0.64 -0.54 16 2 C -0.09 -0.91 2.46 -10.79 -0.03 -0.94 16 3 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 4 C 0.13 2.39 5.06 86.38 0.44 2.82 16 5 N -0.71 -15.38 5.28 -463.07 -2.45 -17.83 16 6 C 0.53 18.62 7.85 87.66 0.69 19.31 16 7 O -0.57 -25.93 15.86 -3.04 -0.05 -25.98 16 8 C -0.13 -4.86 6.16 71.24 0.44 -4.42 16 9 S -0.16 -8.54 20.57 -56.49 -1.16 -9.70 16 10 C -0.55 -30.77 9.50 67.96 0.65 -30.12 16 11 H 0.08 4.36 7.80 -2.91 -0.02 4.33 16 12 C 0.01 0.74 5.49 84.86 0.47 1.21 16 13 N -0.91 -55.77 13.22 21.65 0.29 -55.48 16 14 Si 1.00 42.93 29.55 68.60 2.03 44.95 16 15 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 16 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 18 C 0.13 1.61 5.06 86.38 0.44 2.05 16 19 N -0.71 -6.52 5.17 -463.06 -2.39 -8.91 16 20 C 0.53 7.93 6.93 87.66 0.61 8.53 16 21 O -0.58 -14.41 15.90 -3.04 -0.05 -14.46 16 22 C -0.14 -1.42 1.26 -52.40 -0.07 -1.49 16 23 C 0.09 0.51 6.96 71.98 0.50 1.01 16 24 F -0.21 -2.01 14.57 44.97 0.66 -1.35 16 25 C -0.11 -0.94 6.96 31.12 0.22 -0.72 16 26 C -0.14 -1.32 7.56 31.12 0.24 -1.08 16 27 C -0.12 -1.50 6.97 31.12 0.22 -1.28 16 28 H 0.07 0.51 7.18 -2.39 -0.02 0.50 16 29 H 0.08 0.28 7.18 -2.39 -0.02 0.26 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.42 5.81 7.65 -92.71 -0.71 5.10 16 34 H 0.11 3.73 8.14 -2.40 -0.02 3.71 16 35 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 36 H 0.27 15.42 8.31 -92.72 -0.77 14.65 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.42 1.02 6.56 -92.71 -0.61 0.41 16 40 H 0.11 0.02 7.04 -2.38 -0.02 0.00 16 41 H 0.09 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 43 H 0.10 0.52 8.06 -2.38 -0.02 0.50 16 44 H 0.10 0.91 6.44 -2.39 -0.02 0.89 16 45 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 46 H 0.08 0.89 8.10 -2.39 -0.02 0.87 16 47 H 0.08 1.31 7.43 -2.39 -0.02 1.30 16 Total: -1.00 -83.65 399.89 1.98 -81.66 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -0.33 Total: 12.75 kcal Atomic # 6 Polarization: -11.10 SS G_CDS: 5.44 Total: -5.66 kcal Atomic # 7 Polarization: -77.67 SS G_CDS: -4.55 Total: -82.23 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.10 Total: -40.43 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.66 Total: -1.35 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.54 SS G_CDS: -1.16 Total: -9.70 kcal Total: -83.65 1.98 -81.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721580893.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.486 kcal (2) G-P(sol) polarization free energy of solvation -83.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds