Wall clock time and date at job start Sat Apr 11 2020 07:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46925 * 49.53711 * 3 2 1 5 5 C 1.34779 * 119.99868 * 91.32776 * 4 3 2 6 6 O 1.21283 * 119.99816 * 3.88090 * 5 4 3 7 7 C 1.50700 * 119.99986 * 183.89282 * 5 4 3 8 8 H 1.09000 * 109.46689 * 305.26506 * 7 5 4 9 9 C 1.53000 * 109.47462 * 65.26647 * 7 5 4 10 10 C 1.50700 * 109.46897 * 185.27079 * 7 5 4 11 11 C 1.38429 * 122.53933 * 119.99808 * 10 7 5 12 12 C 1.33386 * 114.92054 * 179.72305 * 11 10 7 13 13 S 1.75887 * 109.59513 * 0.27414 * 12 11 10 14 14 C 1.33391 * 122.54237 * 300.24958 * 10 7 5 15 15 C 1.46496 * 120.00251 * 271.31686 * 4 3 2 16 16 C 1.53041 * 109.45956 * 53.37991 * 15 4 3 17 17 C 1.53193 * 109.31455 * 178.61367 * 16 15 4 18 18 N 1.46918 * 108.77388 * 54.63639 * 17 16 15 19 19 C 1.36936 * 120.63280 * 126.41549 * 18 17 16 20 20 H 1.08002 * 119.99631 * 323.83052 * 19 18 17 21 21 C 1.38811 * 120.00644 * 143.82406 * 19 18 17 22 22 N 1.31614 * 119.99799 * 355.50911 * 21 19 18 23 23 Si 1.86802 * 120.00301 * 175.50338 * 21 19 18 24 24 H 1.48503 * 109.46681 * 60.00677 * 23 21 19 25 25 H 1.48502 * 109.46941 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47348 * 300.00433 * 23 21 19 27 27 C 1.46925 * 118.74148 * 306.39082 * 18 17 16 28 28 C 1.53042 * 109.46152 * 293.31332 * 15 4 3 29 29 H 4.40634 * 5.51427 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46788 * 289.53552 * 3 2 1 31 31 H 1.08999 * 109.46689 * 169.53826 * 3 2 1 32 32 H 1.09002 * 109.46859 * 63.78855 * 9 7 5 33 33 H 1.09000 * 109.46831 * 183.78907 * 9 7 5 34 34 H 1.08998 * 109.46913 * 303.79210 * 9 7 5 35 35 H 1.07998 * 122.53773 * 359.97438 * 11 10 7 36 36 H 1.08001 * 125.20400 * 180.24717 * 12 11 10 37 37 H 1.08000 * 125.20021 * 359.97027 * 14 10 7 38 38 H 1.09002 * 109.45962 * 173.34075 * 15 4 3 39 39 H 1.08991 * 109.49902 * 298.57028 * 16 15 4 40 40 H 1.09002 * 109.49456 * 58.66291 * 16 15 4 41 41 H 1.09000 * 109.58706 * 294.85277 * 17 16 15 42 42 H 1.08999 * 109.70422 * 174.49462 * 17 16 15 43 43 H 0.97003 * 120.00425 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.58809 * 293.82195 * 27 18 17 45 45 H 1.09004 * 109.70552 * 173.46602 * 27 18 17 46 46 H 1.08995 * 109.49909 * 301.33788 * 28 15 4 47 47 H 1.09002 * 109.49387 * 61.43203 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1347 -0.8955 -1.0509 5 6 3.3846 -0.4140 -2.2847 6 8 3.2726 0.7731 -2.5065 7 6 3.8030 -1.3507 -3.3886 8 1 4.6768 -1.9195 -3.0707 9 6 2.6554 -2.3123 -3.7039 10 6 4.1437 -0.5537 -4.6214 11 6 5.3976 -0.5878 -5.2070 12 6 5.5304 0.1717 -6.2954 13 16 4.0131 0.9971 -6.6275 14 6 3.2615 0.2418 -5.2281 15 6 3.3520 -2.3149 -0.7606 16 6 2.0783 -2.9131 -0.1591 17 6 2.2977 -4.4050 0.1110 18 7 3.4932 -4.5627 0.9503 19 6 3.4350 -5.2699 2.1215 20 1 2.5487 -5.2233 2.7369 21 6 4.5151 -6.0466 2.5178 22 7 5.5592 -6.1742 1.7268 23 14 4.4866 -6.9106 4.1738 24 1 3.3344 -7.8461 4.2241 25 1 5.7496 -7.6698 4.3577 26 1 4.3535 -5.9025 5.2559 27 6 4.7525 -3.9478 0.5090 28 6 4.5056 -2.4611 0.2345 29 1 -1.0498 -0.0001 -0.0004 30 1 3.0095 -0.3428 0.9686 31 1 3.0089 1.0114 -0.1866 32 1 1.8039 -1.7489 -4.0857 33 1 2.9808 -3.0324 -4.4546 34 1 2.3641 -2.8403 -2.7960 35 1 6.2058 -1.1872 -4.8148 36 1 6.4318 0.2659 -6.8828 37 1 2.2404 0.3949 -4.9113 38 1 3.5994 -2.8404 -1.6830 39 1 1.8441 -2.4046 0.7761 40 1 1.2519 -2.7877 -0.8587 41 1 2.4424 -4.9298 -0.8333 42 1 1.4310 -4.8161 0.6285 43 1 6.3142 -6.7167 2.0038 44 1 5.0973 -4.4354 -0.4028 45 1 5.5068 -4.0551 1.2885 46 1 5.4068 -2.0140 -0.1850 47 1 4.2485 -1.9568 1.1660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724058063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:50 Heat of formation + Delta-G solvation = 82.544034 kcal Electronic energy + Delta-G solvation = -28872.985862 eV Core-core repulsion = 25150.064148 eV Total energy + Delta-G solvation = -3722.921715 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.146 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60834 -38.35756 -37.35998 -35.31749 -33.76164 -32.67938 -32.04076 -30.15657 -29.60056 -28.94896 -27.21534 -25.46641 -24.97592 -22.94414 -22.25348 -22.01921 -19.88673 -19.34989 -18.51357 -17.95868 -17.77811 -16.86977 -16.80398 -15.89441 -15.36938 -14.93700 -14.82432 -14.28544 -14.10445 -13.83734 -13.66696 -13.45135 -13.14907 -13.06399 -12.84377 -12.74698 -12.63592 -12.55543 -12.29102 -12.23748 -11.67008 -11.53479 -11.47315 -11.07199 -10.93227 -10.83461 -10.75553 -10.55730 -10.38804 -10.26927 -10.19128 -10.02245 -9.89764 -9.75270 -9.43160 -8.79339 -8.63056 -8.45193 -8.43483 -6.62664 -5.86142 -3.39099 1.00194 1.62161 1.93544 2.44763 2.64432 2.81634 2.95863 3.33808 3.39395 3.40132 3.53497 4.42740 4.46851 4.57211 4.64407 4.94658 5.05673 5.13768 5.18295 5.29362 5.36094 5.42087 5.42502 5.48384 5.56047 5.60966 5.66008 5.69676 5.76006 5.96221 5.98264 6.02028 6.03495 6.16528 6.28409 6.32219 6.40942 6.45779 6.47867 6.56080 6.67968 6.71496 6.89717 7.27429 7.50208 7.61360 7.70215 7.73882 8.25500 8.44522 9.16859 9.75470 10.35803 11.22140 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.002939 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.942099 B = 9524.311968 C =10642.211028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.187 4.187 3 C 0.220 3.780 4 N -0.600 5.600 5 C 0.523 3.477 6 O -0.538 6.538 7 C -0.050 4.050 8 H 0.107 0.893 9 C -0.149 4.149 10 C -0.091 4.091 11 C -0.122 4.122 12 C -0.218 4.218 13 S 0.081 5.919 14 C -0.169 4.169 15 C 0.133 3.867 16 C -0.139 4.139 17 C 0.148 3.852 18 N -0.591 5.591 19 C -0.258 4.258 20 H 0.061 0.939 21 C 0.011 3.989 22 N -0.903 5.903 23 Si 0.904 3.096 24 H -0.282 1.282 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.177 3.823 28 C -0.152 4.152 29 H 0.214 0.786 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.160 0.840 38 H 0.096 0.904 39 H 0.064 0.936 40 H 0.053 0.947 41 H 0.019 0.981 42 H 0.057 0.943 43 H 0.256 0.744 44 H 0.021 0.979 45 H 0.089 0.911 46 H 0.053 0.947 47 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.718 11.328 -12.951 17.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.189 4.189 3 C 0.098 3.902 4 N -0.331 5.331 5 C 0.311 3.689 6 O -0.415 6.415 7 C -0.074 4.074 8 H 0.125 0.875 9 C -0.206 4.206 10 C -0.103 4.103 11 C -0.152 4.152 12 C -0.353 4.353 13 S 0.344 5.656 14 C -0.304 4.304 15 C 0.032 3.968 16 C -0.179 4.179 17 C 0.021 3.979 18 N -0.313 5.313 19 C -0.388 4.388 20 H 0.079 0.921 21 C -0.188 4.188 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.208 1.208 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.050 3.950 28 C -0.192 4.192 29 H 0.231 0.769 30 H 0.121 0.879 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.159 0.841 36 H 0.180 0.820 37 H 0.178 0.822 38 H 0.114 0.886 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.075 0.925 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.108 0.892 46 H 0.071 0.929 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.064 12.870 -14.172 19.571 hybrid contribution 0.327 -1.470 2.034 2.531 sum -3.737 11.400 -12.138 17.066 Atomic orbital electron populations 1.24813 0.95812 1.01146 1.00283 1.23550 0.94875 0.99949 1.00496 1.18211 0.83597 0.95956 0.92401 1.48235 1.64718 1.10354 1.09797 1.20518 0.76470 0.88839 0.83108 1.90673 1.52359 1.16515 1.81947 1.19967 1.01173 0.95528 0.90719 0.87538 1.22013 0.96675 0.98584 1.03366 1.18373 0.93524 1.00665 0.97739 1.20080 0.97424 1.01368 0.96348 1.25460 1.01635 1.04753 1.03472 1.84159 1.05083 1.48004 1.28376 1.25328 1.03937 1.02134 0.99031 1.21583 0.96910 0.78416 0.99936 1.22410 0.95471 0.99593 1.00387 1.20899 0.91506 0.91175 0.94342 1.43957 1.04987 1.60126 1.22271 1.19066 1.02186 1.20600 0.96928 0.92091 1.25297 0.97949 0.97209 0.98347 1.69909 1.07141 1.41626 1.35994 0.86364 0.76984 0.79629 0.83684 1.20787 1.21557 1.20910 1.20750 0.89732 0.85377 0.99131 1.22678 0.96012 1.02415 0.98111 0.76913 0.87901 0.87929 0.92168 0.91010 0.90346 0.84140 0.81998 0.82245 0.88613 0.91701 0.92847 0.96330 0.92456 0.93421 0.96140 0.89236 0.92863 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.58 19.25 29.55 0.57 -2.01 16 2 C -0.19 -2.67 11.99 -37.12 -0.45 -3.11 16 3 C 0.22 3.07 5.26 -6.83 -0.04 3.04 16 4 N -0.60 -8.59 2.37 -169.37 -0.40 -9.00 16 5 C 0.52 7.73 6.92 -10.98 -0.08 7.66 16 6 O -0.54 -9.34 14.64 5.56 0.08 -9.26 16 7 C -0.05 -0.62 2.12 -92.92 -0.20 -0.82 16 8 H 0.11 1.26 7.36 -51.93 -0.38 0.87 16 9 C -0.15 -1.67 8.61 37.16 0.32 -1.35 16 10 C -0.09 -1.14 4.34 -106.25 -0.46 -1.60 16 11 C -0.12 -1.37 9.92 -41.21 -0.41 -1.78 16 12 C -0.22 -2.23 11.23 29.04 0.33 -1.90 16 13 S 0.08 0.86 23.34 -107.50 -2.51 -1.65 16 14 C -0.17 -2.09 9.09 29.04 0.26 -1.83 16 15 C 0.13 2.01 1.52 -67.89 -0.10 1.90 16 16 C -0.14 -2.22 4.15 -26.61 -0.11 -2.33 16 17 C 0.15 2.84 6.52 -3.71 -0.02 2.82 16 18 N -0.59 -13.70 2.97 -172.33 -0.51 -14.21 16 19 C -0.26 -6.71 9.54 -15.06 -0.14 -6.86 16 20 H 0.06 1.57 7.83 -52.49 -0.41 1.16 16 21 C 0.01 0.30 5.16 -17.43 -0.09 0.21 16 22 N -0.90 -24.89 11.08 55.49 0.61 -24.28 16 23 Si 0.90 20.89 29.56 -169.99 -5.02 15.87 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 C 0.18 3.83 5.21 -3.71 -0.02 3.81 16 28 C -0.15 -2.60 5.42 -26.61 -0.14 -2.74 16 29 H 0.21 1.96 7.80 -54.10 -0.42 1.54 16 30 H 0.10 1.38 6.80 -51.93 -0.35 1.02 16 31 H 0.10 1.43 7.33 -51.93 -0.38 1.05 16 32 H 0.06 0.67 7.62 -51.93 -0.40 0.27 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.93 4.87 -51.93 -0.25 0.68 16 35 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.16 1.98 7.89 -52.49 -0.41 1.57 16 38 H 0.10 1.38 4.27 -51.93 -0.22 1.16 16 39 H 0.06 1.11 7.00 -51.93 -0.36 0.75 16 40 H 0.05 0.79 7.75 -51.93 -0.40 0.39 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 1.11 7.93 -51.93 -0.41 0.70 16 43 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 2.23 6.29 -51.93 -0.33 1.90 16 46 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.06 1.05 6.99 -51.93 -0.36 0.69 16 LS Contribution 386.25 15.07 5.82 5.82 Total: -1.00 -29.90 386.25 -9.48 -39.38 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.77 Total: 4.22 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -0.78 Total: -6.89 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.30 Total: -47.48 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.86 SS G_CDS: -2.51 Total: -1.65 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -29.90 -9.48 -39.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724058063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.928 kcal (2) G-P(sol) polarization free energy of solvation -29.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds