Wall clock time and date at job start Sat Apr 11 2020 07:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46925 * 49.53711 * 3 2 1 5 5 C 1.34779 * 119.99868 * 91.32776 * 4 3 2 6 6 O 1.21283 * 119.99816 * 3.88090 * 5 4 3 7 7 C 1.50700 * 119.99986 * 183.89282 * 5 4 3 8 8 H 1.09000 * 109.46689 * 305.26506 * 7 5 4 9 9 C 1.53000 * 109.47462 * 65.26647 * 7 5 4 10 10 C 1.50700 * 109.46897 * 185.27079 * 7 5 4 11 11 C 1.38429 * 122.53933 * 119.99808 * 10 7 5 12 12 C 1.33386 * 114.92054 * 179.72305 * 11 10 7 13 13 S 1.75887 * 109.59513 * 0.27414 * 12 11 10 14 14 C 1.33391 * 122.54237 * 300.24958 * 10 7 5 15 15 C 1.46496 * 120.00251 * 271.31686 * 4 3 2 16 16 C 1.53041 * 109.45956 * 53.37991 * 15 4 3 17 17 C 1.53193 * 109.31455 * 178.61367 * 16 15 4 18 18 N 1.46918 * 108.77388 * 54.63639 * 17 16 15 19 19 C 1.36936 * 120.63280 * 126.41549 * 18 17 16 20 20 H 1.08002 * 119.99631 * 323.83052 * 19 18 17 21 21 C 1.38811 * 120.00644 * 143.82406 * 19 18 17 22 22 N 1.31614 * 119.99799 * 355.50911 * 21 19 18 23 23 Si 1.86802 * 120.00301 * 175.50338 * 21 19 18 24 24 H 1.48503 * 109.46681 * 60.00677 * 23 21 19 25 25 H 1.48502 * 109.46941 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47348 * 300.00433 * 23 21 19 27 27 C 1.46925 * 118.74148 * 306.39082 * 18 17 16 28 28 C 1.53042 * 109.46152 * 293.31332 * 15 4 3 29 29 H 4.40634 * 5.51427 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.46788 * 289.53552 * 3 2 1 31 31 H 1.08999 * 109.46689 * 169.53826 * 3 2 1 32 32 H 1.09002 * 109.46859 * 63.78855 * 9 7 5 33 33 H 1.09000 * 109.46831 * 183.78907 * 9 7 5 34 34 H 1.08998 * 109.46913 * 303.79210 * 9 7 5 35 35 H 1.07998 * 122.53773 * 359.97438 * 11 10 7 36 36 H 1.08001 * 125.20400 * 180.24717 * 12 11 10 37 37 H 1.08000 * 125.20021 * 359.97027 * 14 10 7 38 38 H 1.09002 * 109.45962 * 173.34075 * 15 4 3 39 39 H 1.08991 * 109.49902 * 298.57028 * 16 15 4 40 40 H 1.09002 * 109.49456 * 58.66291 * 16 15 4 41 41 H 1.09000 * 109.58706 * 294.85277 * 17 16 15 42 42 H 1.08999 * 109.70422 * 174.49462 * 17 16 15 43 43 H 0.97003 * 120.00425 * 179.97438 * 22 21 19 44 44 H 1.08996 * 109.58809 * 293.82195 * 27 18 17 45 45 H 1.09004 * 109.70552 * 173.46602 * 27 18 17 46 46 H 1.08995 * 109.49909 * 301.33788 * 28 15 4 47 47 H 1.09002 * 109.49387 * 61.43203 * 28 15 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1347 -0.8955 -1.0509 5 6 3.3846 -0.4140 -2.2847 6 8 3.2726 0.7731 -2.5065 7 6 3.8030 -1.3507 -3.3886 8 1 4.6768 -1.9195 -3.0707 9 6 2.6554 -2.3123 -3.7039 10 6 4.1437 -0.5537 -4.6214 11 6 5.3976 -0.5878 -5.2070 12 6 5.5304 0.1717 -6.2954 13 16 4.0131 0.9971 -6.6275 14 6 3.2615 0.2418 -5.2281 15 6 3.3520 -2.3149 -0.7606 16 6 2.0783 -2.9131 -0.1591 17 6 2.2977 -4.4050 0.1110 18 7 3.4932 -4.5627 0.9503 19 6 3.4350 -5.2699 2.1215 20 1 2.5487 -5.2233 2.7369 21 6 4.5151 -6.0466 2.5178 22 7 5.5592 -6.1742 1.7268 23 14 4.4866 -6.9106 4.1738 24 1 3.3344 -7.8461 4.2241 25 1 5.7496 -7.6698 4.3577 26 1 4.3535 -5.9025 5.2559 27 6 4.7525 -3.9478 0.5090 28 6 4.5056 -2.4611 0.2345 29 1 -1.0498 -0.0001 -0.0004 30 1 3.0095 -0.3428 0.9686 31 1 3.0089 1.0114 -0.1866 32 1 1.8039 -1.7489 -4.0857 33 1 2.9808 -3.0324 -4.4546 34 1 2.3641 -2.8403 -2.7960 35 1 6.2058 -1.1872 -4.8148 36 1 6.4318 0.2659 -6.8828 37 1 2.2404 0.3949 -4.9113 38 1 3.5994 -2.8404 -1.6830 39 1 1.8441 -2.4046 0.7761 40 1 1.2519 -2.7877 -0.8587 41 1 2.4424 -4.9298 -0.8333 42 1 1.4310 -4.8161 0.6285 43 1 6.3142 -6.7167 2.0038 44 1 5.0973 -4.4354 -0.4028 45 1 5.5068 -4.0551 1.2885 46 1 5.4068 -2.0140 -0.1850 47 1 4.2485 -1.9568 1.1660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724058063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:49 Heat of formation + Delta-G solvation = 68.453077 kcal Electronic energy + Delta-G solvation = -28873.596892 eV Core-core repulsion = 25150.064148 eV Total energy + Delta-G solvation = -3723.532744 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 346.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.75625 -39.51313 -38.58963 -36.75215 -34.85168 -34.11917 -33.32106 -31.68853 -31.24377 -29.83670 -28.30613 -26.97556 -26.15839 -24.13560 -23.79765 -23.36455 -20.91475 -20.88248 -19.43798 -19.10115 -18.82638 -18.43042 -17.92580 -17.13819 -16.77145 -16.39013 -15.87847 -15.66470 -15.33454 -15.19373 -15.02359 -14.73780 -14.55369 -14.21840 -14.08201 -13.95323 -13.86646 -13.57249 -13.32616 -13.22843 -13.10805 -12.84353 -12.67212 -12.63292 -12.42339 -12.39183 -12.06782 -11.97920 -11.87615 -11.60734 -11.54164 -11.48180 -11.35543 -11.03605 -10.65627 -10.51606 -9.79383 -9.64369 -9.27897 -8.51713 -7.84632 -5.39573 0.14650 0.78926 1.09871 1.38463 1.50093 1.50304 1.56866 1.57040 1.83665 1.92437 2.42891 2.52512 3.32883 3.46285 3.52948 3.71949 3.74541 3.81971 4.03731 4.09575 4.22396 4.28074 4.29324 4.38524 4.50150 4.51209 4.53500 4.69311 4.72988 4.78943 4.83570 4.85214 4.93906 5.02226 5.05992 5.10449 5.15724 5.17770 5.23760 5.37653 5.43160 5.47941 5.58460 5.59783 5.69220 5.80828 6.34499 6.48256 6.68714 7.09765 7.21905 7.88804 8.42724 9.20683 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.015407 B = 0.002939 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1816.942099 B = 9524.311968 C =10642.211028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.228 4.228 3 C 0.220 3.780 4 N -0.595 5.595 5 C 0.523 3.477 6 O -0.565 6.565 7 C -0.048 4.048 8 H 0.115 0.885 9 C -0.144 4.144 10 C -0.100 4.100 11 C -0.140 4.140 12 C -0.212 4.212 13 S 0.096 5.904 14 C -0.190 4.190 15 C 0.146 3.854 16 C -0.121 4.121 17 C 0.146 3.854 18 N -0.609 5.609 19 C -0.266 4.266 20 H 0.059 0.941 21 C -0.039 4.039 22 N -0.930 5.930 23 Si 0.962 3.038 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.279 1.279 27 C 0.185 3.815 28 C -0.138 4.138 29 H 0.245 0.755 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.188 0.812 37 H 0.153 0.847 38 H 0.108 0.892 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.053 0.947 43 H 0.251 0.749 44 H 0.008 0.992 45 H 0.053 0.947 46 H 0.068 0.932 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 11.809 -13.904 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.229 4.229 3 C 0.098 3.902 4 N -0.325 5.325 5 C 0.312 3.688 6 O -0.444 6.444 7 C -0.072 4.072 8 H 0.133 0.867 9 C -0.201 4.201 10 C -0.112 4.112 11 C -0.170 4.170 12 C -0.347 4.347 13 S 0.359 5.641 14 C -0.325 4.325 15 C 0.044 3.956 16 C -0.161 4.161 17 C 0.020 3.980 18 N -0.332 5.332 19 C -0.396 4.396 20 H 0.077 0.923 21 C -0.235 4.235 22 N -0.575 5.575 23 Si 0.791 3.209 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.205 1.205 27 C 0.059 3.941 28 C -0.178 4.178 29 H 0.262 0.738 30 H 0.122 0.878 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.172 0.828 36 H 0.206 0.794 37 H 0.170 0.830 38 H 0.126 0.874 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.060 0.940 44 H 0.026 0.974 45 H 0.071 0.929 46 H 0.086 0.914 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.830 13.366 -15.130 20.758 hybrid contribution 0.496 -1.558 2.291 2.815 sum -4.333 11.808 -12.839 17.974 Atomic orbital electron populations 1.25640 0.96669 0.99351 0.98544 1.23758 0.95409 1.01633 1.02140 1.18200 0.84082 0.95678 0.92259 1.48142 1.64557 1.09854 1.09996 1.20921 0.75729 0.88788 0.83377 1.90660 1.53555 1.17815 1.82322 1.20000 1.01821 0.95288 0.90065 0.86747 1.21978 0.96259 0.98445 1.03436 1.18510 0.94155 1.00829 0.97745 1.20273 0.97425 1.02315 0.96951 1.25838 1.02217 1.03548 1.03128 1.84085 1.05171 1.47571 1.27285 1.25394 1.03979 1.02979 1.00178 1.21366 0.95537 0.79039 0.99702 1.22184 0.96468 0.97004 1.00452 1.21001 0.89799 0.93366 0.93790 1.44190 1.06382 1.60353 1.22313 1.19341 1.01950 1.20310 0.98023 0.92291 1.25945 0.97902 0.98271 1.01372 1.70061 1.07525 1.42459 1.37443 0.85436 0.76640 0.78565 0.80297 1.20278 1.22027 1.20525 1.20504 0.88548 0.87971 0.97099 1.22440 0.97699 0.98982 0.98682 0.73825 0.87779 0.88306 0.92177 0.89578 0.90918 0.82769 0.79445 0.82955 0.87418 0.92664 0.90952 0.95729 0.92793 0.94019 0.97417 0.92854 0.91350 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.28 19.25 74.32 1.43 -2.85 16 2 C -0.23 -6.20 11.99 31.13 0.37 -5.82 16 3 C 0.22 5.98 5.26 84.58 0.45 6.43 16 4 N -0.60 -16.37 2.37 -808.15 -1.92 -18.28 16 5 C 0.52 14.90 6.92 87.66 0.61 15.50 16 6 O -0.56 -19.29 14.64 -3.04 -0.04 -19.33 16 7 C -0.05 -1.13 2.12 -12.29 -0.03 -1.16 16 8 H 0.11 2.49 7.36 -2.39 -0.02 2.47 16 9 C -0.14 -2.97 8.61 71.98 0.62 -2.35 16 10 C -0.10 -2.36 4.34 -20.92 -0.09 -2.45 16 11 C -0.14 -2.89 9.92 21.22 0.21 -2.67 16 12 C -0.21 -3.87 11.23 66.72 0.75 -3.12 16 13 S 0.10 1.88 23.34 -56.49 -1.32 0.56 16 14 C -0.19 -4.53 9.09 66.72 0.61 -3.92 16 15 C 0.15 4.20 1.52 45.02 0.07 4.26 16 16 C -0.12 -3.70 4.15 30.67 0.13 -3.57 16 17 C 0.15 5.50 6.52 86.36 0.56 6.07 16 18 N -0.61 -28.32 2.97 -699.12 -2.08 -30.40 16 19 C -0.27 -13.92 9.54 84.03 0.80 -13.12 16 20 H 0.06 3.05 7.83 -2.91 -0.02 3.03 16 21 C -0.04 -2.06 5.16 84.86 0.44 -1.62 16 22 N -0.93 -52.27 11.08 21.65 0.24 -52.03 16 23 Si 0.96 43.29 29.56 68.60 2.03 45.32 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 26 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 27 C 0.18 8.12 5.21 86.36 0.45 8.57 16 28 C -0.14 -4.65 5.42 30.67 0.17 -4.48 16 29 H 0.25 3.67 7.80 -4.43 -0.03 3.64 16 30 H 0.10 2.74 6.80 -2.38 -0.02 2.73 16 31 H 0.10 2.74 7.33 -2.39 -0.02 2.72 16 32 H 0.06 1.24 7.62 -2.39 -0.02 1.22 16 33 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.07 1.57 4.87 -2.39 -0.01 1.56 16 35 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.19 2.33 8.06 -2.91 -0.02 2.30 16 37 H 0.15 3.75 7.89 -2.91 -0.02 3.73 16 38 H 0.11 2.91 4.27 -2.39 -0.01 2.90 16 39 H 0.05 1.82 7.00 -2.39 -0.02 1.80 16 40 H 0.07 1.97 7.75 -2.39 -0.02 1.95 16 41 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 43 H 0.25 13.77 8.31 -92.71 -0.77 13.00 16 44 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 45 H 0.05 2.73 6.29 -2.39 -0.02 2.71 16 46 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.05 1.88 6.99 -2.39 -0.02 1.86 16 Total: -1.00 -64.40 386.25 5.42 -58.99 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: 0.97 Total: 21.47 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 7.54 Total: -6.30 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -3.75 Total: -100.71 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.04 Total: -19.33 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.32 Total: 0.56 kcal Total: -64.40 5.42 -58.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724058063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.438 kcal (2) G-P(sol) polarization free energy of solvation -64.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds