Wall clock time and date at job start Sat Apr 11 2020 07:49:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.46604 * 2 1 4 4 C 1.52999 * 109.46984 * 120.00375 * 2 1 3 5 5 N 1.46506 * 109.46684 * 175.00142 * 4 2 1 6 6 C 1.34777 * 119.99873 * 180.02562 * 5 4 2 7 7 O 1.21543 * 120.00110 * 359.97438 * 6 5 4 8 8 C 1.47966 * 119.99865 * 180.02562 * 6 5 4 9 9 C 1.39739 * 119.42783 * 179.97438 * 8 6 5 10 10 C 1.36990 * 119.59972 * 179.97438 * 9 8 6 11 11 C 1.39900 * 118.36012 * 359.97438 * 10 9 8 12 12 N 1.35425 * 133.80782 * 180.02562 * 11 10 9 13 13 C 1.30221 * 109.57483 * 179.97438 * 12 11 10 14 14 N 1.35998 * 110.17876 * 0.02562 * 13 12 11 15 15 H 0.96997 * 126.29117 * 180.02562 * 14 13 12 16 16 C 1.37942 * 107.41547 * 359.97438 * 14 13 12 17 17 N 1.31885 * 133.83295 * 180.35806 * 16 14 13 18 18 N 1.46899 * 109.46643 * 240.00054 * 2 1 3 19 19 C 1.46904 * 110.99709 * 85.00231 * 18 2 1 20 20 C 1.50700 * 109.47069 * 179.97438 * 19 18 2 21 21 O 1.21293 * 120.00189 * 0.02562 * 20 19 18 22 22 N 1.34778 * 120.00119 * 179.97438 * 20 19 18 23 23 C 1.37096 * 120.00004 * 179.97438 * 22 20 19 24 24 H 1.08006 * 120.00055 * 0.02562 * 23 22 20 25 25 C 1.38946 * 119.99962 * 180.02562 * 23 22 20 26 26 N 1.31410 * 120.00101 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 120.00050 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47187 * 0.02562 * 27 25 23 29 29 H 1.48505 * 109.47094 * 120.00453 * 27 25 23 30 30 H 1.48502 * 109.47336 * 239.99974 * 27 25 23 31 31 H 1.09001 * 109.46642 * 299.99764 * 1 2 3 32 32 H 1.08998 * 109.46901 * 59.99999 * 1 2 3 33 33 H 1.08999 * 109.47112 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47486 * 55.00077 * 4 2 1 35 35 H 1.09001 * 109.47362 * 294.99354 * 4 2 1 36 36 H 0.96995 * 120.00050 * 359.72237 * 5 4 2 37 37 H 1.07994 * 120.19814 * 359.97438 * 9 8 6 38 38 H 1.08003 * 120.81544 * 180.02562 * 10 9 8 39 39 H 1.08000 * 124.91010 * 179.97438 * 13 12 11 40 40 H 1.00890 * 111.00592 * 321.04763 * 18 2 1 41 41 H 1.08996 * 109.47209 * 299.99709 * 19 18 2 42 42 H 1.09004 * 109.47529 * 59.99830 * 19 18 2 43 43 H 0.96996 * 119.99977 * 0.02562 * 22 20 19 44 44 H 0.97000 * 120.00301 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5002 -0.8264 1.1905 6 6 4.1731 -1.4293 2.1905 7 8 3.5688 -1.8853 3.1413 8 6 5.6479 -1.5349 2.1315 9 6 6.3336 -2.1619 3.1752 10 6 7.6989 -2.2620 3.1239 11 6 8.3633 -1.7270 2.0150 12 7 9.6648 -1.6518 1.6483 13 6 9.7604 -1.0432 0.5011 14 7 8.5261 -0.6865 0.0550 15 1 8.3270 -0.2222 -0.7730 16 6 7.6095 -1.1072 0.9960 17 7 6.2955 -1.0385 1.0857 18 7 2.0196 -0.6925 -1.1995 19 6 2.0824 0.2227 -2.3469 20 6 2.5883 -0.5214 -3.5558 21 8 2.8686 -1.6984 -3.4701 22 7 2.7285 0.1208 -4.7325 23 6 3.1892 -0.5560 -5.8321 24 1 3.4395 -1.6039 -5.7556 25 6 3.3342 0.1061 -7.0450 26 7 3.0301 1.3811 -7.1380 27 14 3.9613 -0.8162 -8.5435 28 1 4.2296 -2.2303 -8.1780 29 1 2.9375 -0.7689 -9.6182 30 1 5.2148 -0.1827 -9.0260 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 1.6055 -1.7199 1.2951 35 1 1.7518 -0.1584 2.1370 36 1 3.9821 -0.4660 0.4298 37 1 5.7906 -2.5650 4.0171 38 1 8.2486 -2.7430 3.9194 39 1 10.6860 -0.8490 -0.0203 40 1 1.4496 -1.4978 -1.4101 41 1 1.0871 0.6164 -2.5525 42 1 2.7589 1.0463 -2.1183 43 1 2.5040 1.0619 -4.8011 44 1 3.1316 1.8435 -7.9847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731601367.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:32 Heat of formation + Delta-G solvation = 17.044728 kcal Electronic energy + Delta-G solvation = -29151.083795 eV Core-core repulsion = 24911.321354 eV Total energy + Delta-G solvation = -4239.762441 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.60906 -40.01518 -38.56138 -38.00197 -36.87586 -34.30879 -33.99111 -33.66903 -31.57104 -31.32471 -30.83613 -30.08659 -26.75093 -26.29280 -24.72192 -23.95982 -23.35893 -21.88585 -21.02649 -20.75756 -19.35469 -18.89399 -18.16132 -17.91941 -17.39282 -16.36403 -16.09312 -15.88542 -15.57251 -15.22856 -15.13546 -14.90878 -14.58690 -14.56890 -14.13504 -13.91883 -13.56032 -13.33680 -13.12374 -13.04709 -12.91144 -12.55895 -12.34478 -12.21438 -11.73195 -11.61577 -11.52102 -11.43973 -11.38388 -11.11127 -11.00332 -10.39146 -10.31612 -10.27513 -9.57020 -9.49009 -9.20130 -9.04905 -8.74577 -8.53287 -8.13353 -8.01039 -6.46993 -3.87802 0.21090 0.96781 2.22249 2.26535 2.84749 3.11528 3.12103 3.22570 3.29702 3.71463 3.74961 3.85825 4.01700 4.07297 4.25389 4.33686 4.70502 4.77207 4.78548 4.84701 4.98944 5.09651 5.17731 5.23846 5.32956 5.47046 5.50159 5.59701 5.67688 5.70955 5.78305 5.80813 5.86308 5.97532 6.03055 6.21834 6.25053 6.46678 6.74765 7.12019 7.32448 7.38240 7.50298 7.57570 7.68828 8.01379 8.20558 8.56116 9.13094 9.49254 10.00775 10.70765 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.008281 B = 0.002890 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.625934 B = 9686.624274 C =12577.733287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.068 3.932 3 H 0.084 0.916 4 C 0.131 3.869 5 N -0.689 5.689 6 C 0.572 3.428 7 O -0.541 6.541 8 C 0.121 3.879 9 C -0.125 4.125 10 C -0.029 4.029 11 C 0.023 3.977 12 N -0.495 5.495 13 C 0.288 3.712 14 N -0.585 5.585 15 H 0.435 0.565 16 C 0.237 3.763 17 N -0.445 5.445 18 N -0.663 5.663 19 C 0.050 3.950 20 C 0.441 3.559 21 O -0.581 6.581 22 N -0.564 5.564 23 C -0.298 4.298 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.928 3.072 28 H -0.268 1.268 29 H -0.281 1.281 30 H -0.281 1.281 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.420 0.580 37 H 0.157 0.843 38 H 0.149 0.851 39 H 0.228 0.772 40 H 0.353 0.647 41 H 0.045 0.955 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 1.242 17.528 18.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.043 4.043 3 H 0.103 0.897 4 C 0.007 3.993 5 N -0.340 5.340 6 C 0.356 3.644 7 O -0.418 6.418 8 C -0.028 4.028 9 C -0.149 4.149 10 C -0.057 4.057 11 C -0.099 4.099 12 N -0.215 5.215 13 C 0.000 4.000 14 N -0.199 5.199 15 H 0.275 0.725 16 C -0.002 4.002 17 N -0.160 5.160 18 N -0.296 5.296 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.465 6.465 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.755 3.245 28 H -0.192 1.192 29 H -0.207 1.207 30 H -0.207 1.207 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.258 0.742 37 H 0.175 0.825 38 H 0.166 0.834 39 H 0.244 0.756 40 H 0.174 0.826 41 H 0.063 0.937 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.914 0.403 18.044 19.328 hybrid contribution -0.748 0.752 -1.996 2.260 sum 6.166 1.156 16.049 17.231 Atomic orbital electron populations 1.22435 0.96138 1.02773 1.02642 1.21856 0.93403 0.98353 0.90713 0.89741 1.21422 0.79779 1.01203 0.96900 1.45688 1.07732 1.57444 1.23099 1.17685 0.85172 0.78654 0.82918 1.90780 1.68437 1.48810 1.33809 1.20915 0.93985 0.97535 0.90331 1.21558 0.93811 0.99539 0.99979 1.20444 0.93086 0.96486 0.95674 1.19899 0.90750 1.02430 0.96842 1.70462 1.17901 1.20689 1.12407 1.25592 0.88734 0.93760 0.91923 1.42955 1.05905 1.50069 1.20990 0.72480 1.18868 0.88973 1.00792 0.91547 1.66210 1.06805 1.18523 1.24471 1.60161 1.57727 1.09173 1.02531 1.21713 1.00012 0.95633 0.90891 1.19816 0.85161 0.88248 0.84182 1.90540 1.55175 1.16234 1.84593 1.41869 1.57838 1.12460 1.07948 1.19744 1.39829 0.96456 0.86774 0.87923 1.25252 0.97688 0.95769 0.99224 1.69616 1.48750 1.08855 1.27104 0.85820 0.78271 0.79645 0.80739 1.19228 1.20735 1.20744 0.91796 0.91915 0.91920 0.91185 0.91018 0.74229 0.82518 0.83370 0.75629 0.82647 0.93688 0.89680 0.77507 0.91921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.70 9.16 37.16 0.34 -1.36 16 2 C 0.07 0.75 2.75 -67.71 -0.19 0.56 16 3 H 0.08 0.88 7.80 -51.93 -0.40 0.48 16 4 C 0.13 1.53 5.37 -4.04 -0.02 1.51 16 5 N -0.69 -9.19 5.38 -61.21 -0.33 -9.52 16 6 C 0.57 8.19 7.80 -12.27 -0.10 8.10 16 7 O -0.54 -8.65 16.29 5.33 0.09 -8.57 16 8 C 0.12 1.63 6.74 -82.97 -0.56 1.07 16 9 C -0.13 -1.41 9.55 -39.47 -0.38 -1.79 16 10 C -0.03 -0.31 10.16 -39.41 -0.40 -0.71 16 11 C 0.02 0.28 7.25 -84.58 -0.61 -0.34 16 12 N -0.49 -5.50 11.27 -11.93 -0.13 -5.63 16 13 C 0.29 2.21 12.96 -89.73 -1.16 1.04 16 14 N -0.58 -5.34 6.22 -13.20 -0.08 -5.42 16 15 H 0.43 3.02 8.96 -40.82 -0.37 2.65 16 16 C 0.24 2.99 8.46 -155.74 -1.32 1.68 16 17 N -0.44 -6.17 9.54 -8.82 -0.08 -6.25 16 18 N -0.66 -9.77 5.31 -107.99 -0.57 -10.35 16 19 C 0.05 0.82 5.96 -4.97 -0.03 0.79 16 20 C 0.44 9.98 7.82 -10.99 -0.09 9.89 16 21 O -0.58 -15.37 15.78 5.55 0.09 -15.29 16 22 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 23 C -0.30 -8.15 9.68 -14.94 -0.14 -8.29 16 24 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 26 N -0.90 -24.01 13.05 55.50 0.72 -23.29 16 27 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 28 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 29 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 30 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.62 7.45 -51.93 -0.39 0.23 16 33 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.42 5.90 7.44 -40.82 -0.30 5.59 16 37 H 0.16 1.53 7.61 -52.49 -0.40 1.13 16 38 H 0.15 1.16 8.06 -52.48 -0.42 0.73 16 39 H 0.23 0.53 8.06 -52.49 -0.42 0.10 16 40 H 0.35 5.59 8.17 -39.30 -0.32 5.27 16 41 H 0.05 0.66 7.44 -51.93 -0.39 0.28 16 42 H 0.08 1.27 8.06 -51.93 -0.42 0.85 16 43 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 44 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 383.13 15.07 5.77 5.77 Total: -1.00 -35.30 383.13 -9.72 -45.01 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: -5.36 Total: 19.16 kcal Atomic # 6 Polarization: 17.38 SS G_CDS: -4.75 Total: 12.63 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -0.54 Total: -74.35 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: 0.17 Total: -23.85 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.30 -9.72 -45.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731601367.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.059 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds