Wall clock time and date at job start Sat Apr 11 2020 07:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 5 5 N 1.46898 * 109.46971 * 175.00074 * 4 2 1 6 6 C 1.46904 * 111.00099 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47078 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00300 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99827 * 180.02562 * 7 6 5 10 10 C 1.37098 * 119.99731 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00084 * 359.97438 * 10 9 7 12 12 C 1.38946 * 119.99479 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00543 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99944 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46559 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47075 * 120.00039 * 14 12 10 17 17 H 1.48500 * 109.47107 * 239.99848 * 14 12 10 18 18 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 19 19 C 1.34773 * 120.00111 * 84.99828 * 18 2 1 20 20 O 1.21575 * 120.00044 * 0.02562 * 19 18 2 21 21 C 1.47690 * 119.99810 * 179.97438 * 19 18 2 22 22 C 1.39978 * 120.38413 * 359.71853 * 21 19 18 23 23 N 1.31391 * 121.15757 * 179.73105 * 22 21 19 24 24 C 1.32539 * 121.79331 * 0.57322 * 23 22 21 25 25 N 1.37585 * 133.56655 * 179.66942 * 24 23 22 26 26 H 0.96998 * 126.23954 * 0.02562 * 25 24 23 27 27 C 1.36164 * 107.52120 * 180.02562 * 25 24 23 28 28 N 1.30059 * 110.11922 * 0.02562 * 27 25 24 29 29 C 1.35776 * 109.42872 * 359.97438 * 28 27 25 30 30 C 1.39491 * 133.74186 * 179.97438 * 29 28 27 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 33 33 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 34 34 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 35 35 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 36 36 H 1.00902 * 110.99925 * 56.04842 * 5 4 2 37 37 H 1.08994 * 109.47045 * 300.00696 * 6 5 4 38 38 H 1.09000 * 109.46462 * 60.00067 * 6 5 4 39 39 H 0.96996 * 119.99872 * 359.97438 * 9 7 6 40 40 H 0.96997 * 120.00317 * 179.97438 * 13 12 10 41 41 H 0.97003 * 119.99624 * 264.99510 * 18 2 1 42 42 H 1.08003 * 119.42111 * 0.02562 * 22 21 19 43 43 H 1.08007 * 124.94416 * 180.02562 * 27 25 24 44 44 H 1.08000 * 120.97389 * 0.06106 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1903 6 6 4.0305 -1.5149 2.3766 7 6 5.5318 -1.6044 2.2805 8 8 6.1067 -1.1402 1.3187 9 7 6.2356 -2.2004 3.2634 10 6 7.6014 -2.2814 3.1762 11 1 8.1133 -1.8680 2.3198 12 6 8.3269 -2.8963 4.1892 13 7 7.7040 -3.3997 5.2311 14 14 10.1878 -3.0073 4.0702 15 1 10.6420 -2.3688 2.8087 16 1 10.8005 -2.3070 5.2275 17 1 10.6002 -4.4339 4.0800 18 7 2.0184 -0.6905 -1.1963 19 6 2.1470 -0.0181 -2.3572 20 8 1.8583 1.1616 -2.4116 21 6 2.6398 -0.7142 -3.5630 22 6 2.9811 -2.0706 -3.5077 23 7 3.4160 -2.7061 -4.5722 24 6 3.5623 -2.0949 -5.7392 25 7 3.9924 -2.5085 -6.9789 26 1 4.2848 -3.4026 -7.2155 27 6 3.9328 -1.4339 -7.8130 28 7 3.4964 -0.3915 -7.1692 29 6 3.2467 -0.7299 -5.8782 30 6 2.7767 -0.0250 -4.7701 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.7517 -0.1584 2.1369 35 1 1.6055 -1.7198 1.2950 36 1 3.9280 0.0826 1.0823 37 1 3.7559 -0.9572 3.2719 38 1 3.6097 -2.5189 2.4306 39 1 5.7758 -2.5713 4.0327 40 1 8.2104 -3.8293 5.9380 41 1 2.2491 -1.6317 -1.1527 42 1 2.8807 -2.6053 -2.5747 43 1 4.2078 -1.4455 -8.8575 44 1 2.5255 1.0228 -4.8435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001732997677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:35 Heat of formation + Delta-G solvation = 17.439852 kcal Electronic energy + Delta-G solvation = -28867.169408 eV Core-core repulsion = 24627.424101 eV Total energy + Delta-G solvation = -4239.745307 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.68641 -40.13407 -38.43964 -38.12118 -36.64615 -34.34435 -33.97686 -33.68273 -31.96179 -31.25539 -31.07989 -29.68108 -27.60921 -25.19266 -24.71277 -24.11806 -23.22815 -22.15392 -21.46919 -20.62560 -19.26165 -19.00372 -18.27278 -17.90137 -17.28773 -16.62709 -16.22307 -16.05230 -15.77525 -15.10095 -15.01906 -14.63584 -14.53836 -14.36884 -14.14315 -13.96965 -13.72946 -13.52439 -13.29413 -13.20224 -12.90780 -12.58706 -12.46352 -12.01344 -11.81676 -11.56012 -11.51270 -11.47547 -11.41934 -11.06822 -10.95453 -10.35226 -10.23635 -10.20626 -9.53107 -9.49835 -9.28002 -9.05730 -8.90930 -8.49733 -8.12298 -7.97310 -6.43046 -3.83738 0.43894 0.55123 2.15901 2.38875 2.77626 2.99786 3.15470 3.26217 3.33625 3.64226 3.73637 3.89440 4.04328 4.04715 4.27648 4.35933 4.54647 4.63541 4.71175 4.75997 5.02355 5.07416 5.09792 5.22307 5.28128 5.39904 5.44369 5.55093 5.56786 5.71147 5.76533 5.77360 5.90322 5.93977 6.04480 6.11911 6.24044 6.44044 6.67529 7.12369 7.27186 7.45572 7.49674 7.54425 7.57745 8.05362 8.15998 8.59961 9.17031 9.53124 10.04498 10.74739 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.002375 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.197406 B =11786.941510 C =14086.374567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.089 0.911 4 C 0.047 3.953 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.282 1.282 17 H -0.281 1.281 18 N -0.701 5.701 19 C 0.573 3.427 20 O -0.541 6.541 21 C -0.196 4.196 22 C 0.182 3.818 23 N -0.484 5.484 24 C 0.257 3.743 25 N -0.588 5.588 26 H 0.431 0.569 27 C 0.275 3.725 28 N -0.480 5.480 29 C -0.010 4.010 30 C 0.048 3.952 31 H 0.059 0.941 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.352 0.648 37 H 0.044 0.956 38 H 0.086 0.914 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.405 0.595 42 H 0.172 0.828 43 H 0.227 0.773 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.117 0.283 -18.235 23.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.107 0.893 4 C -0.083 4.083 5 N -0.300 5.300 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.543 5.543 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.208 1.208 17 H -0.207 1.207 18 N -0.352 5.352 19 C 0.359 3.641 20 O -0.420 6.420 21 C -0.204 4.204 22 C 0.013 3.987 23 N -0.196 5.196 24 C 0.021 3.979 25 N -0.203 5.203 26 H 0.271 0.729 27 C -0.014 4.014 28 N -0.199 5.199 29 C -0.130 4.130 30 C 0.020 3.980 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.171 0.829 37 H 0.062 0.938 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.241 0.759 42 H 0.189 0.811 43 H 0.243 0.757 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.766 0.768 -19.444 24.427 hybrid contribution 0.872 -0.670 1.374 1.760 sum -13.894 0.097 -18.070 22.794 Atomic orbital electron populations 1.22148 0.94807 1.02342 1.02744 1.20987 0.93684 0.97596 0.83633 0.89281 1.22328 0.89572 1.00782 0.95653 1.60084 1.03015 1.26984 1.39943 1.21679 0.95303 0.99876 0.91370 1.19813 0.88026 0.84582 0.85042 1.90539 1.71105 1.51771 1.33139 1.41874 1.07419 1.51004 1.19815 1.19745 0.81510 1.34999 1.06486 0.87902 1.25258 1.00675 0.96795 0.95246 1.69616 1.36601 1.38689 1.09440 0.85812 0.82278 0.77915 0.78423 1.19217 1.20767 1.20739 1.45704 1.66378 1.14370 1.08722 1.17728 0.77429 0.86240 0.82690 1.90777 1.50844 1.15293 1.85053 1.20665 1.08680 0.95873 0.95172 1.22797 0.90375 0.90385 0.95189 1.66414 1.16916 1.39327 0.96955 1.19167 0.99421 0.91772 0.87582 1.42888 1.55794 1.14237 1.07367 0.72916 1.25535 0.97421 0.80579 0.97828 1.70500 1.18411 1.27595 1.03435 1.19559 1.07177 0.92656 0.93597 1.20844 0.89019 1.00393 0.87747 0.92221 0.91493 0.91785 0.93714 0.90335 0.82890 0.93798 0.89551 0.77482 0.91932 0.75917 0.81072 0.75668 0.82680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.48 37.16 0.35 -1.03 16 2 C 0.15 1.52 2.81 -67.93 -0.19 1.32 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 4 C 0.05 0.49 5.24 -3.83 -0.02 0.47 16 5 N -0.67 -9.74 5.85 -115.06 -0.67 -10.41 16 6 C 0.05 0.83 6.17 -4.97 -0.03 0.79 16 7 C 0.44 10.10 7.82 -10.98 -0.09 10.02 16 8 O -0.58 -15.56 15.78 5.55 0.09 -15.47 16 9 N -0.56 -14.07 5.29 -10.97 -0.06 -14.13 16 10 C -0.30 -8.26 9.68 -14.93 -0.14 -8.40 16 11 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 12 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 13 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 14 Si 0.93 21.02 29.55 -169.99 -5.02 16.00 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 18 N -0.70 -7.63 4.75 -54.79 -0.26 -7.89 16 19 C 0.57 7.44 7.74 -12.40 -0.10 7.34 16 20 O -0.54 -8.60 16.06 5.30 0.09 -8.51 16 21 C -0.20 -2.37 5.89 -104.85 -0.62 -2.99 16 22 C 0.18 2.04 10.69 -17.09 -0.18 1.86 16 23 N -0.48 -5.89 10.36 -11.96 -0.12 -6.02 16 24 C 0.26 2.95 8.45 -155.64 -1.31 1.63 16 25 N -0.59 -4.27 6.20 -13.22 -0.08 -4.35 16 26 H 0.43 1.71 8.96 -40.82 -0.37 1.34 16 27 C 0.27 1.81 12.97 -89.71 -1.16 0.64 16 28 N -0.48 -5.29 11.29 -12.02 -0.14 -5.43 16 29 C -0.01 -0.13 7.23 -84.69 -0.61 -0.74 16 30 C 0.05 0.60 9.75 -38.58 -0.38 0.22 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.35 5.69 8.43 -39.29 -0.33 5.36 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 41 H 0.40 3.84 6.64 -40.82 -0.27 3.57 16 42 H 0.17 1.49 6.39 -52.48 -0.34 1.16 16 43 H 0.23 0.23 8.06 -52.48 -0.42 -0.19 16 44 H 0.16 1.89 7.72 -52.49 -0.41 1.49 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -36.99 383.06 -9.58 -46.58 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -5.32 Total: 15.88 kcal Atomic # 6 Polarization: 16.20 SS G_CDS: -4.58 Total: 11.62 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -0.61 Total: -71.86 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: 0.17 Total: -23.98 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.99 -9.58 -46.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732997677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.017 kcal (2) G-P(sol) polarization free energy of solvation -36.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds