Wall clock time and date at job start Sat Apr 11 2020 07:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.52997 * 109.47164 * 120.00262 * 2 1 3 5 5 N 1.46898 * 109.46971 * 175.00074 * 4 2 1 6 6 C 1.46904 * 111.00099 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47078 * 179.97438 * 6 5 4 8 8 O 1.21290 * 120.00300 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99827 * 180.02562 * 7 6 5 10 10 C 1.37098 * 119.99731 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00084 * 359.97438 * 10 9 7 12 12 C 1.38946 * 119.99479 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00543 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99944 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46559 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47075 * 120.00039 * 14 12 10 17 17 H 1.48500 * 109.47107 * 239.99848 * 14 12 10 18 18 N 1.46504 * 109.46883 * 240.00503 * 2 1 3 19 19 C 1.34773 * 120.00111 * 84.99828 * 18 2 1 20 20 O 1.21575 * 120.00044 * 0.02562 * 19 18 2 21 21 C 1.47690 * 119.99810 * 179.97438 * 19 18 2 22 22 C 1.39978 * 120.38413 * 359.71853 * 21 19 18 23 23 N 1.31391 * 121.15757 * 179.73105 * 22 21 19 24 24 C 1.32539 * 121.79331 * 0.57322 * 23 22 21 25 25 N 1.37585 * 133.56655 * 179.66942 * 24 23 22 26 26 H 0.96998 * 126.23954 * 0.02562 * 25 24 23 27 27 C 1.36164 * 107.52120 * 180.02562 * 25 24 23 28 28 N 1.30059 * 110.11922 * 0.02562 * 27 25 24 29 29 C 1.35776 * 109.42872 * 359.97438 * 28 27 25 30 30 C 1.39491 * 133.74186 * 179.97438 * 29 28 27 31 31 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 33 33 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 34 34 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 35 35 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 36 36 H 1.00902 * 110.99925 * 56.04842 * 5 4 2 37 37 H 1.08994 * 109.47045 * 300.00696 * 6 5 4 38 38 H 1.09000 * 109.46462 * 60.00067 * 6 5 4 39 39 H 0.96996 * 119.99872 * 359.97438 * 9 7 6 40 40 H 0.96997 * 120.00317 * 179.97438 * 13 12 10 41 41 H 0.97003 * 119.99624 * 264.99510 * 18 2 1 42 42 H 1.08003 * 119.42111 * 0.02562 * 22 21 19 43 43 H 1.08007 * 124.94416 * 180.02562 * 27 25 24 44 44 H 1.08000 * 120.97389 * 0.06106 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1903 6 6 4.0305 -1.5149 2.3766 7 6 5.5318 -1.6044 2.2805 8 8 6.1067 -1.1402 1.3187 9 7 6.2356 -2.2004 3.2634 10 6 7.6014 -2.2814 3.1762 11 1 8.1133 -1.8680 2.3198 12 6 8.3269 -2.8963 4.1892 13 7 7.7040 -3.3997 5.2311 14 14 10.1878 -3.0073 4.0702 15 1 10.6420 -2.3688 2.8087 16 1 10.8005 -2.3070 5.2275 17 1 10.6002 -4.4339 4.0800 18 7 2.0184 -0.6905 -1.1963 19 6 2.1470 -0.0181 -2.3572 20 8 1.8583 1.1616 -2.4116 21 6 2.6398 -0.7142 -3.5630 22 6 2.9811 -2.0706 -3.5077 23 7 3.4160 -2.7061 -4.5722 24 6 3.5623 -2.0949 -5.7392 25 7 3.9924 -2.5085 -6.9789 26 1 4.2848 -3.4026 -7.2155 27 6 3.9328 -1.4339 -7.8130 28 7 3.4964 -0.3915 -7.1692 29 6 3.2467 -0.7299 -5.8782 30 6 2.7767 -0.0250 -4.7701 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 1.7517 -0.1584 2.1369 35 1 1.6055 -1.7198 1.2950 36 1 3.9280 0.0826 1.0823 37 1 3.7559 -0.9572 3.2719 38 1 3.6097 -2.5189 2.4306 39 1 5.7758 -2.5713 4.0327 40 1 8.2104 -3.8293 5.9380 41 1 2.2491 -1.6317 -1.1527 42 1 2.8807 -2.6053 -2.5747 43 1 4.2078 -1.4455 -8.8575 44 1 2.5255 1.0228 -4.8435 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732997677.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:34 Heat of formation + Delta-G solvation = -12.271395 kcal Electronic energy + Delta-G solvation = -28868.457785 eV Core-core repulsion = 24627.424101 eV Total energy + Delta-G solvation = -4241.033684 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.43606 -41.09584 -40.11331 -39.08645 -37.74459 -36.02241 -35.13938 -34.77074 -33.25179 -32.83216 -31.96408 -30.50666 -28.91832 -26.70219 -25.72071 -24.94308 -24.49052 -22.91365 -22.30675 -21.57025 -21.01268 -19.89265 -19.76898 -19.12804 -18.24119 -17.64443 -17.49031 -16.99788 -16.83493 -16.48871 -16.24861 -16.09300 -15.80320 -15.43947 -15.16653 -15.06951 -14.85385 -14.79286 -14.39983 -14.21202 -13.98011 -13.75634 -13.53108 -13.30068 -13.06111 -12.94532 -12.76511 -12.67948 -12.39643 -12.30212 -12.20608 -12.12449 -11.79564 -11.50201 -11.22194 -10.38912 -10.33469 -10.18906 -9.99459 -9.91403 -9.71782 -9.30768 -8.46083 -5.94097 -0.44717 -0.27486 1.36282 1.41644 1.51063 1.55389 1.67901 1.83931 2.08475 2.10442 2.29458 2.73140 2.92251 3.05673 3.21813 3.33091 3.55087 3.59227 3.67287 3.77366 3.86777 4.14951 4.22353 4.26028 4.37296 4.43329 4.56974 4.64410 4.66578 4.70769 4.80363 4.83232 4.84360 4.93523 5.10561 5.30918 5.33938 5.42102 5.54721 5.90014 6.11473 6.12057 6.35565 6.53574 6.59338 6.62228 6.69151 7.14767 7.20285 7.59227 8.15177 8.71469 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.009686 B = 0.002375 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2890.197406 B =11786.941510 C =14086.374567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.145 3.855 3 H 0.067 0.933 4 C 0.053 3.947 5 N -0.679 5.679 6 C 0.066 3.934 7 C 0.437 3.563 8 O -0.624 6.624 9 N -0.575 5.575 10 C -0.331 4.331 11 H 0.076 0.924 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.989 3.011 15 H -0.276 1.276 16 H -0.271 1.271 17 H -0.270 1.270 18 N -0.691 5.691 19 C 0.571 3.429 20 O -0.578 6.578 21 C -0.201 4.201 22 C 0.177 3.823 23 N -0.495 5.495 24 C 0.241 3.759 25 N -0.575 5.575 26 H 0.448 0.552 27 C 0.305 3.695 28 N -0.526 5.526 29 C -0.026 4.026 30 C 0.029 3.971 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.046 0.954 34 H 0.063 0.937 35 H 0.101 0.899 36 H 0.340 0.660 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.413 0.587 42 H 0.193 0.807 43 H 0.284 0.716 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.595 -1.348 -18.532 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.041 3.959 3 H 0.085 0.915 4 C -0.076 4.076 5 N -0.311 5.311 6 C -0.066 4.066 7 C 0.225 3.775 8 O -0.511 6.511 9 N -0.212 5.212 10 C -0.460 4.460 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.813 3.187 15 H -0.200 1.200 16 H -0.197 1.197 17 H -0.195 1.195 18 N -0.341 5.341 19 C 0.358 3.642 20 O -0.460 6.460 21 C -0.209 4.209 22 C 0.008 3.992 23 N -0.207 5.207 24 C 0.003 3.997 25 N -0.191 5.191 26 H 0.291 0.709 27 C 0.018 3.982 28 N -0.246 5.246 29 C -0.145 4.145 30 C 0.001 3.999 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.157 0.843 37 H 0.085 0.915 38 H 0.130 0.870 39 H 0.231 0.769 40 H 0.087 0.913 41 H 0.250 0.750 42 H 0.210 0.790 43 H 0.299 0.701 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -15.272 -0.926 -19.714 24.954 hybrid contribution 1.007 -0.157 1.333 1.678 sum -14.265 -1.083 -18.381 23.292 Atomic orbital electron populations 1.22070 0.92922 1.03446 1.02713 1.21046 0.95029 0.96439 0.83412 0.91509 1.22403 0.86747 1.02372 0.96036 1.60089 1.05431 1.26296 1.39316 1.21545 0.90063 1.01967 0.93016 1.21006 0.90814 0.82274 0.83447 1.90512 1.72917 1.53002 1.34641 1.41940 1.06765 1.51874 1.20651 1.19649 0.83209 1.36693 1.06492 0.90633 1.25984 1.04673 0.95950 0.94627 1.69666 1.38086 1.38622 1.09703 0.84922 0.77244 0.78315 0.78173 1.20026 1.19654 1.19538 1.45693 1.65475 1.14646 1.08323 1.17891 0.77033 0.85837 0.83402 1.90749 1.52711 1.16843 1.85668 1.20621 1.09239 0.96349 0.94715 1.23081 0.90174 0.90040 0.95906 1.66472 1.17277 1.39548 0.97431 1.19459 0.99834 0.91794 0.88616 1.42982 1.54891 1.15389 1.05852 0.70897 1.26712 0.93427 0.78897 0.99176 1.70510 1.21163 1.29808 1.03133 1.19736 1.07282 0.93244 0.94243 1.20889 0.90096 1.00280 0.88594 0.90492 0.89841 0.93517 0.91850 0.88038 0.84255 0.91488 0.86981 0.76902 0.91340 0.74961 0.79023 0.70100 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.48 71.98 0.68 -1.67 16 2 C 0.15 2.88 2.81 44.99 0.13 3.01 16 3 H 0.07 1.65 7.58 -2.39 -0.02 1.64 16 4 C 0.05 0.97 5.24 86.30 0.45 1.42 16 5 N -0.68 -18.85 5.85 -517.95 -3.03 -21.88 16 6 C 0.07 2.04 6.17 85.56 0.53 2.57 16 7 C 0.44 20.07 7.82 87.66 0.69 20.76 16 8 O -0.62 -34.16 15.78 -3.06 -0.05 -34.21 16 9 N -0.57 -28.85 5.29 -306.99 -1.62 -30.47 16 10 C -0.33 -18.69 9.68 84.04 0.81 -17.87 16 11 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 12 C -0.01 -0.67 5.50 84.92 0.47 -0.21 16 13 N -0.92 -49.11 13.05 21.66 0.28 -48.83 16 14 Si 0.99 42.95 29.55 68.60 2.03 44.98 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 18 N -0.69 -14.87 4.75 -445.54 -2.12 -16.98 16 19 C 0.57 15.50 7.74 86.74 0.67 16.17 16 20 O -0.58 -19.52 16.06 -3.95 -0.06 -19.58 16 21 C -0.20 -5.13 5.89 -20.01 -0.12 -5.24 16 22 C 0.18 4.01 10.69 85.18 0.91 4.92 16 23 N -0.49 -11.95 10.36 -191.76 -1.99 -13.94 16 24 C 0.24 5.42 8.45 133.91 1.13 6.55 16 25 N -0.58 -7.21 6.20 -195.73 -1.21 -8.42 16 26 H 0.45 2.41 8.96 -92.71 -0.83 1.58 16 27 C 0.31 3.25 12.97 180.03 2.33 5.58 16 28 N -0.53 -11.30 11.29 -191.93 -2.17 -13.46 16 29 C -0.03 -0.65 7.23 39.46 0.29 -0.37 16 30 C 0.03 0.79 9.75 22.92 0.22 1.01 16 31 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.34 10.92 8.43 -89.69 -0.76 10.16 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 39 H 0.40 18.76 7.90 -92.71 -0.73 18.03 16 40 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 41 H 0.41 7.43 6.64 -92.71 -0.62 6.81 16 42 H 0.19 3.25 6.39 -2.91 -0.02 3.23 16 43 H 0.28 -0.73 8.06 -2.91 -0.02 -0.75 16 44 H 0.15 4.00 7.72 -2.91 -0.02 3.98 16 Total: -1.00 -83.94 383.06 -2.57 -86.51 By element: Atomic # 1 Polarization: 41.50 SS G_CDS: -1.82 Total: 39.68 kcal Atomic # 6 Polarization: 27.43 SS G_CDS: 9.19 Total: 36.62 kcal Atomic # 7 Polarization: -142.14 SS G_CDS: -11.86 Total: -154.00 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.11 Total: -53.79 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -83.94 -2.57 -86.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732997677.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.235 kcal (2) G-P(sol) polarization free energy of solvation -83.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds