Wall clock time and date at job start Sat Apr 11 2020 07:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47228 * 2 1 4 4 C 1.52995 * 109.47485 * 120.00264 * 2 1 3 5 5 N 1.46898 * 109.47643 * 174.99739 * 4 2 1 6 6 C 1.46898 * 111.00421 * 180.02562 * 5 4 2 7 7 C 1.50698 * 109.47478 * 180.02562 * 6 5 4 8 8 O 1.21296 * 119.99603 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00287 * 180.02562 * 7 6 5 10 10 C 1.37093 * 120.00329 * 179.97438 * 9 7 6 11 11 H 1.08004 * 119.99495 * 0.02562 * 10 9 7 12 12 C 1.38948 * 120.00040 * 179.97438 * 10 9 7 13 13 N 1.31402 * 120.00384 * 0.02562 * 12 10 9 14 14 Si 1.86810 * 119.99807 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.46847 * 0.02562 * 14 12 10 16 16 H 1.48492 * 109.46801 * 120.00077 * 14 12 10 17 17 H 1.48496 * 109.47050 * 240.00486 * 14 12 10 18 18 N 1.46505 * 109.47087 * 239.99984 * 2 1 3 19 19 C 1.34778 * 119.99579 * 84.99541 * 18 2 1 20 20 O 1.21587 * 120.00371 * 0.02562 * 19 18 2 21 21 C 1.47587 * 119.99676 * 180.02562 * 19 18 2 22 22 C 1.41517 * 120.56945 * 359.94553 * 21 19 18 23 23 N 1.30892 * 120.17215 * 180.02562 * 22 21 19 24 24 C 1.34264 * 121.27120 * 0.03487 * 23 22 21 25 25 N 1.32428 * 131.63477 * 180.02562 * 24 23 22 26 26 C 1.33695 * 109.32135 * 180.02562 * 25 24 23 27 27 C 1.34909 * 108.65899 * 359.97438 * 26 25 24 28 28 N 1.37002 * 107.05484 * 0.02562 * 27 26 25 29 29 C 1.35970 * 132.54576 * 180.02562 * 28 27 26 30 30 H 1.08999 * 109.47228 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46552 * 300.00168 * 1 2 3 32 32 H 1.09000 * 109.46901 * 59.99577 * 1 2 3 33 33 H 1.09003 * 109.47102 * 295.00119 * 4 2 1 34 34 H 1.09003 * 109.47263 * 54.99408 * 4 2 1 35 35 H 1.00903 * 110.99527 * 303.95562 * 5 4 2 36 36 H 1.09006 * 109.46725 * 300.00371 * 6 5 4 37 37 H 1.09000 * 109.47170 * 59.99344 * 6 5 4 38 38 H 0.97004 * 119.99828 * 359.97438 * 9 7 6 39 39 H 0.96998 * 120.00341 * 180.02562 * 13 12 10 40 40 H 0.96995 * 120.00284 * 265.00339 * 18 2 1 41 41 H 1.08007 * 119.91306 * 0.03835 * 22 21 19 42 42 H 1.08008 * 125.67158 * 179.97438 * 26 25 24 43 43 H 1.08003 * 126.46842 * 180.02562 * 27 26 25 44 44 H 1.07993 * 120.57968 * 359.95600 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 3.5041 -0.8267 1.1903 6 6 4.0304 -1.5160 2.3760 7 6 5.5317 -1.6045 2.2805 8 8 6.1067 -1.1395 1.3191 9 7 6.2354 -2.2012 3.2630 10 6 7.6012 -2.2822 3.1759 11 1 8.1132 -1.8674 2.3202 12 6 8.3267 -2.8969 4.1891 13 7 7.7038 -3.4010 5.2304 14 14 10.1878 -3.0066 4.0707 15 1 10.6421 -2.3673 2.8096 16 1 10.7995 -2.3062 5.2284 17 1 10.6012 -4.4328 4.0801 18 7 2.0183 -0.6906 -1.1962 19 6 2.1469 -0.0182 -2.3572 20 8 1.8581 1.1616 -2.4117 21 6 2.6383 -0.7141 -3.5624 22 6 2.9790 -2.0867 -3.5123 23 7 3.4146 -2.6960 -4.5858 24 6 3.5496 -2.0433 -5.7513 25 7 3.9625 -2.4470 -6.9431 26 6 3.9209 -1.4192 -7.7971 27 6 3.4707 -0.3302 -7.1403 28 7 3.2326 -0.7114 -5.8461 29 6 2.7761 -0.0360 -4.7579 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.7517 -0.1584 2.1369 34 1 1.6054 -1.7198 1.2951 35 1 3.7995 -1.2884 0.3431 36 1 3.7558 -0.9590 3.2718 37 1 3.6094 -2.5200 2.4293 38 1 5.7755 -2.5734 4.0317 39 1 8.2103 -3.8298 5.9379 40 1 2.2490 -1.6318 -1.1527 41 1 2.8792 -2.6330 -2.5859 42 1 4.2012 -1.4548 -8.8396 43 1 3.3256 0.6559 -7.5563 44 1 2.5252 1.0121 -4.8272 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733004730.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:37 Heat of formation + Delta-G solvation = 17.491364 kcal Electronic energy + Delta-G solvation = -28979.041065 eV Core-core repulsion = 24739.297992 eV Total energy + Delta-G solvation = -4239.743073 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.16761 -41.22840 -40.12668 -39.06625 -37.86626 -36.05436 -35.80033 -35.10438 -33.27779 -33.04576 -31.35206 -30.36980 -28.94418 -26.71923 -26.15267 -25.30506 -24.57866 -23.10597 -22.59048 -21.67409 -21.07102 -19.93778 -19.81825 -19.15705 -18.21711 -17.70897 -17.54990 -17.39634 -16.84908 -16.58892 -16.33014 -16.14174 -15.86633 -15.43643 -15.31082 -15.18367 -15.07762 -14.86715 -14.60554 -14.30085 -13.97541 -13.65484 -13.54440 -13.36065 -13.07606 -13.02244 -12.97855 -12.77300 -12.64779 -12.39983 -12.12707 -11.91759 -11.84886 -11.50769 -11.37118 -10.90861 -10.45595 -10.33722 -10.11213 -10.00188 -9.35505 -9.28597 -8.46687 -5.94667 -0.84233 -0.35911 1.08585 1.36092 1.37961 1.41749 1.55224 1.90197 2.00550 2.07429 2.29032 2.41641 2.46419 2.90802 3.08626 3.21342 3.25504 3.48375 3.54990 3.66269 3.87875 4.07056 4.24407 4.26395 4.30699 4.35232 4.41780 4.46210 4.54010 4.63981 4.74322 4.79501 4.84298 4.92481 5.10607 5.27376 5.34854 5.41740 5.44606 5.45195 5.88723 6.10758 6.28576 6.34910 6.42096 6.61327 6.75133 7.02382 7.14084 7.58390 8.14030 8.70791 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.009876 B = 0.002379 C = 0.001997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2834.611777 B =11766.492000 C =14017.537524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.148 3.852 3 H 0.076 0.924 4 C 0.053 3.947 5 N -0.687 5.687 6 C 0.065 3.935 7 C 0.435 3.565 8 O -0.625 6.625 9 N -0.574 5.574 10 C -0.331 4.331 11 H 0.076 0.924 12 C -0.012 4.012 13 N -0.919 5.919 14 Si 0.989 3.011 15 H -0.276 1.276 16 H -0.271 1.271 17 H -0.271 1.271 18 N -0.704 5.704 19 C 0.587 3.413 20 O -0.563 6.563 21 C -0.231 4.231 22 C 0.205 3.795 23 N -0.470 5.470 24 C 0.351 3.649 25 N -0.512 5.512 26 C 0.035 3.965 27 C -0.075 4.075 28 N -0.406 5.406 29 C 0.195 3.805 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.050 0.950 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.343 0.657 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.397 0.603 39 H 0.277 0.723 40 H 0.409 0.591 41 H 0.211 0.789 42 H 0.224 0.776 43 H 0.236 0.764 44 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.862 5.614 -16.241 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.044 3.956 3 H 0.094 0.906 4 C -0.076 4.076 5 N -0.321 5.321 6 C -0.067 4.067 7 C 0.223 3.777 8 O -0.512 6.512 9 N -0.211 5.211 10 C -0.461 4.461 11 H 0.094 0.906 12 C -0.212 4.212 13 N -0.560 5.560 14 Si 0.813 3.187 15 H -0.200 1.200 16 H -0.196 1.196 17 H -0.196 1.196 18 N -0.355 5.355 19 C 0.373 3.627 20 O -0.443 6.443 21 C -0.240 4.240 22 C 0.017 3.983 23 N -0.181 5.181 24 C 0.003 3.997 25 N -0.235 5.235 26 C -0.113 4.113 27 C -0.204 4.204 28 N -0.084 5.084 29 C 0.060 3.940 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.069 0.931 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.162 0.838 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.231 0.769 39 H 0.087 0.913 40 H 0.246 0.754 41 H 0.227 0.773 42 H 0.241 0.759 43 H 0.252 0.748 44 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -17.959 5.597 -16.940 25.314 hybrid contribution 0.464 -0.122 0.498 0.691 sum -17.496 5.476 -16.441 24.625 Atomic orbital electron populations 1.22083 0.92747 1.03387 1.03004 1.21087 0.94928 0.97166 0.82388 0.90622 1.22414 0.86027 1.00877 0.98247 1.59992 1.10387 1.57595 1.04107 1.21552 0.89881 0.99315 0.95941 1.21016 0.90913 0.82026 0.83728 1.90507 1.72953 1.52746 1.34984 1.41936 1.06774 1.51626 1.20776 1.19649 0.83218 1.36646 1.06588 0.90607 1.25975 1.04639 0.95944 0.94613 1.69658 1.38087 1.38563 1.09682 0.84930 0.77289 0.78296 0.78195 1.20034 1.19632 1.19574 1.45813 1.66210 1.14455 1.09071 1.17354 0.76986 0.85667 0.82681 1.90800 1.52002 1.16194 1.85295 1.20606 1.11888 0.96407 0.95114 1.23815 0.87623 0.90432 0.96456 1.67786 1.17285 1.36170 0.96906 1.22315 1.03286 0.79529 0.94583 1.70676 1.23017 1.31568 0.98271 1.23398 0.99646 0.86985 1.01320 1.23613 1.11626 1.04465 0.80670 1.44184 1.41646 1.12243 1.10323 1.22987 0.87862 0.99887 0.83225 0.90698 0.89831 0.93052 0.88054 0.91934 0.83799 0.87543 0.90740 0.76872 0.91319 0.75364 0.77312 0.75946 0.74775 0.76868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.48 71.98 0.68 -1.16 16 2 C 0.15 2.44 2.88 44.99 0.13 2.57 16 3 H 0.08 1.69 7.58 -2.39 -0.02 1.67 16 4 C 0.05 0.87 5.30 86.30 0.46 1.32 16 5 N -0.69 -18.27 6.12 -517.94 -3.17 -21.44 16 6 C 0.07 1.96 6.17 85.56 0.53 2.49 16 7 C 0.44 19.78 7.82 87.66 0.69 20.47 16 8 O -0.63 -33.81 15.78 -3.08 -0.05 -33.86 16 9 N -0.57 -28.57 5.29 -306.99 -1.62 -30.20 16 10 C -0.33 -18.64 9.68 84.04 0.81 -17.82 16 11 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 12 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 13 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 14 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 17 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 18 N -0.70 -11.17 4.31 -445.65 -1.92 -13.09 16 19 C 0.59 11.61 7.74 86.71 0.67 12.28 16 20 O -0.56 -14.41 16.04 -3.99 -0.06 -14.48 16 21 C -0.23 -4.19 5.89 -20.03 -0.12 -4.31 16 22 C 0.20 3.85 10.78 85.64 0.92 4.77 16 23 N -0.47 -12.34 10.45 -196.22 -2.05 -14.39 16 24 C 0.35 9.37 8.91 261.29 2.33 11.70 16 25 N -0.51 -13.96 11.31 -199.51 -2.26 -16.21 16 26 C 0.04 0.60 11.82 83.64 0.99 1.59 16 27 C -0.08 -1.00 11.76 83.12 0.98 -0.03 16 28 N -0.41 -7.86 2.94 -355.66 -1.04 -8.91 16 29 C 0.20 3.26 10.65 84.03 0.90 4.15 16 30 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 32 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.34 9.44 7.28 -89.69 -0.65 8.79 16 36 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.40 18.61 7.90 -92.70 -0.73 17.88 16 39 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 40 H 0.41 4.64 6.23 -92.71 -0.58 4.06 16 41 H 0.21 2.36 6.48 -2.91 -0.02 2.34 16 42 H 0.22 1.85 8.06 -2.91 -0.02 1.83 16 43 H 0.24 0.77 8.06 -2.91 -0.02 0.75 16 44 H 0.21 2.42 7.68 -2.91 -0.02 2.39 16 Total: -1.00 -84.29 382.26 -0.31 -84.60 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.88 Total: 33.77 kcal Atomic # 6 Polarization: 27.44 SS G_CDS: 10.43 Total: 37.87 kcal Atomic # 7 Polarization: -141.07 SS G_CDS: -11.78 Total: -152.86 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.11 Total: -48.34 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -84.29 -0.31 -84.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733004730.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.091 kcal (2) G-P(sol) polarization free energy of solvation -84.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds