Wall clock time and date at job start Sat Apr 11 2020 07:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 109.47508 * 2 1 4 4 C 1.52996 * 109.47415 * 120.00452 * 2 1 3 5 5 N 1.46901 * 109.47700 * 174.99854 * 4 2 1 6 6 C 1.46898 * 111.00157 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46787 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00457 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99685 * 179.97438 * 7 6 5 10 10 C 1.37104 * 119.99679 * 180.02562 * 9 7 6 11 11 H 1.07996 * 120.00192 * 0.02562 * 10 9 7 12 12 C 1.38950 * 119.99714 * 180.02562 * 10 9 7 13 13 N 1.31418 * 120.00108 * 0.02562 * 12 10 9 14 14 Si 1.86799 * 119.99877 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47027 * 90.00426 * 14 12 10 16 16 H 1.48507 * 109.46985 * 210.00145 * 14 12 10 17 17 H 1.48496 * 109.47314 * 329.99893 * 14 12 10 18 18 N 1.46502 * 109.47063 * 240.00368 * 2 1 3 19 19 C 1.34776 * 120.00235 * 84.99687 * 18 2 1 20 20 O 1.21555 * 119.99918 * 0.02562 * 19 18 2 21 21 C 1.47880 * 120.00066 * 179.97438 * 19 18 2 22 22 C 1.39899 * 125.69042 * 180.02562 * 21 19 18 23 23 C 1.38586 * 107.59035 * 180.02562 * 22 21 19 24 24 N 1.34116 * 132.33706 * 180.02562 * 23 22 21 25 25 C 1.31139 * 120.83891 * 179.72562 * 24 23 22 26 26 C 1.40342 * 120.29356 * 0.52860 * 25 24 23 27 27 C 1.35457 * 119.46640 * 359.47392 * 26 25 24 28 28 N 1.36667 * 119.14063 * 0.25629 * 27 26 25 29 29 N 1.32371 * 125.69612 * 0.03087 * 21 19 18 30 30 H 1.09006 * 109.46932 * 299.99689 * 1 2 3 31 31 H 1.09004 * 109.47164 * 59.99389 * 1 2 3 32 32 H 1.09000 * 109.47550 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47095 * 295.00007 * 4 2 1 34 34 H 1.08997 * 109.47153 * 54.99682 * 4 2 1 35 35 H 1.00905 * 110.99852 * 303.95472 * 5 4 2 36 36 H 1.09000 * 109.47138 * 299.99614 * 6 5 4 37 37 H 1.08997 * 109.47071 * 59.99833 * 6 5 4 38 38 H 0.96995 * 120.00592 * 0.02562 * 9 7 6 39 39 H 0.96998 * 119.99875 * 179.97438 * 13 12 10 40 40 H 0.97001 * 119.99744 * 265.00305 * 18 2 1 41 41 H 1.08004 * 126.20622 * 359.97438 * 22 21 19 42 42 H 1.07996 * 119.85257 * 180.26152 * 25 24 23 43 43 H 1.08002 * 120.26873 * 179.75650 * 26 25 24 44 44 H 1.07996 * 120.42893 * 180.27358 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5040 -0.8268 1.1903 6 6 4.0302 -1.5161 2.3760 7 6 5.5315 -1.6057 2.2799 8 8 6.1066 -1.1406 1.3186 9 7 6.2352 -2.2017 3.2628 10 6 7.6011 -2.2827 3.1756 11 1 8.1131 -1.8686 2.3196 12 6 8.3266 -2.8976 4.1886 13 7 7.7035 -3.4020 5.2300 14 14 10.1876 -3.0074 4.0703 15 1 10.7954 -1.8088 4.7022 16 1 10.6571 -4.2289 4.7724 17 1 10.5899 -3.0719 2.6423 18 7 2.0182 -0.6905 -1.1962 19 6 2.1469 -0.0182 -2.3572 20 8 1.8582 1.1613 -2.4116 21 6 2.6404 -0.7151 -3.5645 22 6 2.8195 -0.1359 -4.8253 23 6 3.2939 -1.1221 -5.6757 24 7 3.6290 -1.1106 -6.9742 25 6 4.0671 -2.1962 -7.5651 26 6 4.1820 -3.3962 -6.8464 27 6 3.8469 -3.4216 -5.5342 28 7 3.3981 -2.2758 -4.9396 29 7 2.9862 -1.9910 -3.6327 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.7516 -0.1585 2.1369 34 1 1.6054 -1.7198 1.2950 35 1 3.7995 -1.2885 0.3432 36 1 3.7557 -0.9591 3.2718 37 1 3.6093 -2.5201 2.4292 38 1 5.7755 -2.5733 4.0318 39 1 8.2100 -3.8316 5.9370 40 1 2.2489 -1.6317 -1.1527 41 1 2.6230 0.8929 -5.0885 42 1 4.3365 -2.1679 -8.6106 43 1 4.5390 -4.2910 -7.3345 44 1 3.9335 -4.3354 -4.9652 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733018705.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:41 Heat of formation + Delta-G solvation = 54.939123 kcal Electronic energy + Delta-G solvation = -28854.370781 eV Core-core repulsion = 24616.251564 eV Total energy + Delta-G solvation = -4238.119217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.66327 -40.02722 -38.40641 -38.11127 -36.71926 -34.42581 -34.30124 -33.66276 -31.99904 -31.22202 -30.70994 -29.48891 -27.61002 -25.80897 -25.00958 -24.35454 -23.32834 -22.87015 -21.06513 -20.49310 -19.28365 -18.73020 -18.22356 -17.88278 -17.08857 -16.51210 -16.36440 -16.27095 -15.73338 -15.35049 -15.10744 -14.83520 -14.54152 -14.39929 -14.22828 -13.90318 -13.78606 -13.54882 -13.40059 -13.08479 -12.94935 -12.65443 -12.48899 -11.96505 -11.78735 -11.67715 -11.62902 -11.61287 -11.47454 -11.08516 -10.98856 -10.40228 -10.39352 -10.28975 -10.22534 -9.93137 -9.51582 -9.26371 -8.47613 -8.33845 -8.09263 -7.96609 -6.42476 -3.83194 0.07513 0.35000 1.54781 1.55517 2.81647 2.95184 3.17244 3.19614 3.25712 3.31589 3.47171 3.66874 3.90083 3.96306 4.04652 4.26763 4.40549 4.50428 4.78101 4.86893 4.94802 5.00306 5.08355 5.16321 5.20045 5.26110 5.35249 5.42898 5.54520 5.57019 5.61091 5.76352 5.89368 5.91007 5.96036 6.02313 6.05257 6.25342 6.32661 6.80796 7.14545 7.17534 7.32368 7.54626 7.59051 7.96766 8.05699 8.60783 9.17381 9.53600 10.05342 10.75312 Molecular weight = 346.15amu Principal moments of inertia in cm(-1) A = 0.009056 B = 0.002447 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3091.238273 B =11439.675740 C =13898.257739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.103 0.897 4 C 0.050 3.950 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.440 3.560 8 O -0.582 6.582 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.930 3.070 15 H -0.278 1.278 16 H -0.284 1.284 17 H -0.270 1.270 18 N -0.705 5.705 19 C 0.606 3.394 20 O -0.516 6.516 21 C 0.076 3.924 22 C -0.199 4.199 23 C 0.248 3.752 24 N -0.456 5.456 25 C 0.179 3.821 26 C -0.222 4.222 27 C 0.164 3.836 28 N -0.304 5.304 29 N -0.274 5.274 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.033 0.967 35 H 0.348 0.652 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.392 0.608 39 H 0.271 0.729 40 H 0.405 0.595 41 H 0.173 0.827 42 H 0.182 0.818 43 H 0.170 0.830 44 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.576 -3.019 -20.049 24.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.121 0.879 4 C -0.080 4.080 5 N -0.301 5.301 6 C -0.082 4.082 7 C 0.225 3.775 8 O -0.466 6.466 9 N -0.201 5.201 10 C -0.428 4.428 11 H 0.120 0.880 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.204 1.204 16 H -0.209 1.209 17 H -0.195 1.195 18 N -0.356 5.356 19 C 0.388 3.612 20 O -0.389 6.389 21 C -0.084 4.084 22 C -0.230 4.230 23 C 0.022 3.978 24 N -0.167 5.167 25 C -0.007 4.007 26 C -0.246 4.246 27 C 0.030 3.970 28 N -0.078 5.078 29 N -0.104 5.104 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.108 0.892 34 H 0.051 0.949 35 H 0.168 0.832 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.225 0.775 39 H 0.081 0.919 40 H 0.240 0.760 41 H 0.191 0.809 42 H 0.199 0.801 43 H 0.188 0.812 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.321 -1.406 -19.762 24.446 hybrid contribution 0.686 -1.992 0.325 2.131 sum -13.636 -3.398 -19.438 23.986 Atomic orbital electron populations 1.22160 0.94668 1.02269 1.02989 1.21162 0.93672 0.98636 0.82635 0.87939 1.22312 0.88918 0.99076 0.97669 1.60035 1.07440 1.57567 1.05066 1.21691 0.95142 0.96960 0.94450 1.19813 0.88098 0.84257 0.85307 1.90538 1.71108 1.51394 1.33515 1.41859 1.07404 1.50925 1.19884 1.19702 0.81534 1.35002 1.06585 0.87970 1.25259 1.00681 0.96794 0.95223 1.69614 1.36673 1.38641 1.09439 0.85860 0.82224 0.77654 0.78567 1.20353 1.20931 1.19454 1.45884 1.66175 1.14338 1.09227 1.16751 0.77615 0.85628 0.81209 1.90824 1.49578 1.14380 1.84099 1.22110 0.99139 0.91470 0.95664 1.20974 1.11879 1.00493 0.89684 1.20558 1.01286 0.87087 0.88833 1.68266 1.13325 1.29516 1.05616 1.23467 0.89478 0.86927 1.00782 1.21892 1.07270 1.02125 0.93282 1.22149 0.91887 0.89379 0.93600 1.47135 1.42173 1.09089 1.09369 1.78124 1.23888 1.15653 0.92773 0.91061 0.91737 0.92428 0.89159 0.94855 0.83177 0.89377 0.93834 0.77459 0.91884 0.75987 0.80921 0.80087 0.81243 0.80022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.48 37.15 0.35 -1.15 16 2 C 0.14 1.66 2.88 -67.94 -0.20 1.47 16 3 H 0.10 1.41 7.58 -51.93 -0.39 1.01 16 4 C 0.05 0.59 5.30 -3.83 -0.02 0.57 16 5 N -0.67 -10.87 6.12 -115.06 -0.70 -11.57 16 6 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 7 C 0.44 10.52 7.82 -10.99 -0.09 10.43 16 8 O -0.58 -16.17 15.78 5.55 0.09 -16.08 16 9 N -0.56 -14.39 5.29 -10.96 -0.06 -14.45 16 10 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 11 H 0.10 3.03 7.16 -52.49 -0.38 2.66 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 14 Si 0.93 21.19 29.55 -169.99 -5.02 16.17 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 18 N -0.70 -8.70 4.35 -54.74 -0.24 -8.94 16 19 C 0.61 8.72 7.80 -12.31 -0.10 8.62 16 20 O -0.52 -8.61 16.54 5.32 0.09 -8.53 16 21 C 0.08 1.05 7.05 -83.07 -0.59 0.47 16 22 C -0.20 -2.67 10.65 -38.83 -0.41 -3.08 16 23 C 0.25 3.07 7.90 -155.42 -1.23 1.84 16 24 N -0.46 -4.72 10.48 -12.22 -0.13 -4.85 16 25 C 0.18 1.05 11.27 -17.06 -0.19 0.86 16 26 C -0.22 -0.97 10.05 -39.78 -0.40 -1.37 16 27 C 0.16 1.14 11.30 -16.39 -0.19 0.96 16 28 N -0.30 -3.47 3.90 -12.20 -0.05 -3.52 16 29 N -0.27 -3.62 12.34 33.23 0.41 -3.21 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.35 5.98 7.28 -39.29 -0.29 5.70 16 36 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 37 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.40 4.62 7.84 -40.82 -0.32 4.30 16 41 H 0.17 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.18 0.32 8.06 -52.49 -0.42 -0.10 16 43 H 0.17 0.06 8.06 -52.49 -0.42 -0.36 16 44 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 386.86 15.07 5.83 5.83 Total: -1.00 -37.05 386.86 -7.86 -44.92 By element: Atomic # 1 Polarization: 21.21 SS G_CDS: -5.48 Total: 15.72 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: -3.32 Total: 12.40 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -0.04 Total: -70.42 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.18 Total: -24.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -37.05 -7.86 -44.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733018705.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.855 kcal (2) G-P(sol) polarization free energy of solvation -37.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds