Wall clock time and date at job start Sat Apr 11 2020 07:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99903 * 2 1 4 4 H 1.48494 * 109.47194 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47157 * 300.00315 * 3 2 1 6 6 H 1.48506 * 109.47178 * 60.00206 * 3 2 1 7 7 C 1.37875 * 120.00274 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99686 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49953 * 59.93696 * 9 7 2 11 11 C 1.53037 * 109.49537 * 180.02562 * 9 7 2 12 12 C 1.53038 * 109.53983 * 181.31732 * 11 9 7 13 13 C 1.53197 * 109.30963 * 298.63302 * 12 11 9 14 14 N 1.46926 * 108.77484 * 54.63204 * 13 12 11 15 15 C 1.34777 * 120.62694 * 126.37299 * 14 13 12 16 16 O 1.21278 * 119.99854 * 180.02562 * 15 14 13 17 17 C 1.50703 * 120.00161 * 359.97438 * 15 14 13 18 18 N 1.46505 * 109.47064 * 180.02562 * 17 15 14 19 19 C 1.34771 * 119.99622 * 179.97438 * 18 17 15 20 20 O 1.21280 * 120.00597 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99622 * 179.97438 * 19 18 17 22 22 O 1.42900 * 109.47064 * 180.02562 * 21 19 18 23 23 C 1.35901 * 117.00024 * 179.97438 * 22 21 19 24 24 C 1.38734 * 120.05788 * 359.73149 * 23 22 21 25 25 C 1.38146 * 119.94736 * 179.73958 * 24 23 22 26 26 C 1.38263 * 120.05227 * 0.51035 * 25 24 23 27 27 C 1.38272 * 120.11339 * 359.76479 * 26 25 24 28 28 C 1.38135 * 120.05267 * 359.97438 * 27 26 25 29 29 C 1.46922 * 118.74006 * 306.64082 * 14 13 12 30 30 H 0.97004 * 120.00023 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.46501 * 61.29299 * 11 9 7 32 32 H 1.09004 * 109.44815 * 301.32959 * 11 9 7 33 33 H 1.09000 * 109.50307 * 178.68276 * 12 11 9 34 34 H 1.09001 * 109.50115 * 58.57957 * 12 11 9 35 35 H 1.09001 * 109.58130 * 294.84241 * 13 12 11 36 36 H 1.09005 * 109.70170 * 174.49411 * 13 12 11 37 37 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 38 38 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 39 39 H 0.96996 * 119.99606 * 0.02562 * 18 17 15 40 40 H 1.09001 * 109.47380 * 300.00190 * 21 19 18 41 41 H 1.09002 * 109.47060 * 60.00278 * 21 19 18 42 42 H 1.08002 * 120.02187 * 359.97438 * 24 23 22 43 43 H 1.07998 * 119.97000 * 180.27448 * 25 24 23 44 44 H 1.08003 * 119.94348 * 179.74092 * 26 25 24 45 45 H 1.07996 * 119.96921 * 179.97438 * 27 26 25 46 46 H 1.08004 * 120.02942 * 179.97438 * 28 27 26 47 47 H 1.09003 * 109.58475 * 173.14651 * 29 14 13 48 48 H 1.08996 * 109.58975 * 293.57557 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8904 2.3965 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 1 0.6230 -2.5566 -0.8895 11 6 2.2450 -3.6627 -0.0005 12 6 1.4812 -4.9884 -0.0337 13 6 0.6059 -5.1002 1.2187 14 7 -0.2526 -3.9109 1.3032 15 6 -1.5891 -4.0361 1.4250 16 8 -2.2870 -3.0466 1.4934 17 6 -2.2162 -5.4055 1.4749 18 7 -3.6691 -5.2727 1.6081 19 6 -4.4433 -6.3739 1.6724 20 8 -3.9373 -7.4749 1.6204 21 6 -5.9378 -6.2373 1.8100 22 8 -6.5325 -7.5358 1.8572 23 6 -7.8847 -7.5910 1.9812 24 6 -8.6235 -6.4195 2.0616 25 6 -9.9985 -6.4782 2.1822 26 6 -10.6374 -7.7033 2.2335 27 6 -9.9028 -8.8724 2.1594 28 6 -8.5283 -8.8189 2.0333 29 6 0.3728 -2.5827 1.2466 30 1 -0.4850 0.8401 0.0004 31 1 2.8563 -3.6183 0.9009 32 1 2.8871 -3.5916 -0.8785 33 1 2.1898 -5.8163 -0.0573 34 1 0.8508 -5.0230 -0.9223 35 1 1.2399 -5.1570 2.1035 36 1 -0.0139 -5.9947 1.1552 37 1 -1.8214 -5.9550 2.3295 38 1 -1.9837 -5.9453 0.5570 39 1 -4.0738 -4.3921 1.6493 40 1 -6.1704 -5.6979 2.7282 41 1 -6.3326 -5.6874 0.9556 42 1 -8.1244 -5.4624 2.0260 43 1 -10.5744 -5.5664 2.2403 44 1 -11.7120 -7.7471 2.3321 45 1 -10.4042 -9.8281 2.2002 46 1 -7.9548 -9.7324 1.9759 47 1 -0.4009 -1.8163 1.1990 48 1 0.9873 -2.4299 2.1338 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597918573.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:10 Heat of formation + Delta-G solvation = -82.912113 kcal Electronic energy + Delta-G solvation = -29294.870658 eV Core-core repulsion = 25122.021356 eV Total energy + Delta-G solvation = -4172.849303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.69859 -39.96771 -39.12197 -37.51605 -36.89788 -34.49221 -33.51089 -31.91868 -31.47721 -30.66856 -30.04660 -29.21817 -27.11088 -25.11129 -24.21283 -23.03572 -22.43892 -21.90897 -20.70223 -20.03081 -18.72917 -18.56746 -17.60067 -16.72062 -16.70519 -16.45104 -16.18687 -15.79015 -15.62586 -15.51481 -14.82498 -14.62736 -14.48949 -14.36644 -13.80386 -13.79103 -13.68798 -13.42375 -13.05178 -12.93280 -12.74573 -12.60560 -12.52192 -12.05707 -11.93684 -11.92599 -11.42383 -11.23945 -11.07453 -10.98678 -10.55714 -10.46517 -10.31440 -10.09308 -9.98322 -9.52229 -9.35078 -9.30626 -9.19947 -8.98807 -8.55035 -8.51192 -7.90972 -6.07248 -4.15725 0.99391 1.10684 2.23610 2.35492 2.97412 3.24711 3.31124 3.34273 3.37135 3.45562 3.67436 4.33154 4.37092 4.50948 4.58387 4.66528 4.70542 4.71540 4.81145 5.03990 5.12688 5.19348 5.23829 5.29231 5.31156 5.36273 5.43335 5.59941 5.66312 5.89935 5.95133 6.06114 6.06417 6.15129 6.19528 6.24032 6.39830 6.53242 6.57658 6.76770 6.89496 6.99947 7.02872 7.13122 7.31464 7.55025 7.78298 7.89272 7.96732 8.09999 8.30074 8.59827 8.88789 9.50404 10.98170 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.001834 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.543348 B =15265.408160 C =16517.850123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.062 3.938 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.060 0.940 9 C 0.038 3.962 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.134 4.134 13 C 0.104 3.896 14 N -0.598 5.598 15 C 0.500 3.500 16 O -0.537 6.537 17 C 0.101 3.899 18 N -0.710 5.710 19 C 0.518 3.482 20 O -0.522 6.522 21 C 0.043 3.957 22 O -0.289 6.289 23 C 0.130 3.870 24 C -0.211 4.211 25 C -0.080 4.080 26 C -0.161 4.161 27 C -0.081 4.081 28 C -0.149 4.149 29 C 0.112 3.888 30 H 0.263 0.737 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.414 0.586 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.130 0.870 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.129 0.871 46 H 0.132 0.868 47 H 0.124 0.876 48 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.590 -15.049 4.874 22.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.078 0.922 9 C 0.019 3.981 10 H 0.047 0.953 11 C -0.149 4.149 12 C -0.172 4.172 13 C -0.020 4.020 14 N -0.331 5.331 15 C 0.286 3.714 16 O -0.415 6.415 17 C -0.026 4.026 18 N -0.367 5.367 19 C 0.302 3.698 20 O -0.397 6.397 21 C -0.036 4.036 22 O -0.202 6.202 23 C 0.085 3.915 24 C -0.230 4.230 25 C -0.098 4.098 26 C -0.179 4.179 27 C -0.099 4.099 28 C -0.168 4.168 29 C -0.008 4.008 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.252 0.748 40 H 0.114 0.886 41 H 0.114 0.886 42 H 0.148 0.852 43 H 0.143 0.857 44 H 0.141 0.859 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.142 0.858 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.570 -15.331 4.864 22.385 hybrid contribution 0.322 1.584 -0.011 1.616 sum -15.248 -13.747 4.853 21.096 Atomic orbital electron populations 1.69883 1.05759 1.26777 1.49498 1.25059 0.94908 0.99339 0.94775 0.86522 0.80081 0.83683 0.77649 1.19749 1.20993 1.20962 1.21117 0.93002 0.90031 1.51691 0.92220 1.18913 0.92687 0.92467 0.94002 0.95284 1.21632 0.98571 0.93955 1.00738 1.21948 0.98703 0.99274 0.97320 1.21746 0.93789 0.87453 0.98987 1.48480 1.04966 1.09482 1.70140 1.20236 0.83173 0.90165 0.77817 1.90701 1.60967 1.39098 1.50749 1.21191 0.80539 0.96594 1.04230 1.45536 1.06686 1.09815 1.74641 1.19905 0.87946 0.84635 0.77265 1.90752 1.74895 1.25684 1.48363 1.22437 0.91667 0.85289 1.04218 1.86147 1.17627 1.28501 1.87884 1.19093 0.82010 0.94492 0.95950 1.21330 0.95471 0.97413 1.08778 1.20975 0.93658 0.98130 0.96998 1.21093 1.00107 0.92466 1.04236 1.20987 0.92796 0.98706 0.97419 1.20483 0.94437 0.95977 1.05903 1.22282 0.98833 0.80891 0.98814 0.92690 0.93082 0.92879 0.91934 0.92039 0.91525 0.90903 0.88612 0.88501 0.74766 0.88616 0.88556 0.85241 0.85664 0.85904 0.85301 0.84981 0.85790 0.93703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.89 11.39 55.43 0.63 -24.26 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -13.65 8.56 -34.44 -0.29 -13.94 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 9 C 0.04 0.91 2.24 -91.87 -0.21 0.70 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.10 5.11 -26.69 -0.14 -2.24 16 12 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 13 C 0.10 1.49 6.34 -3.71 -0.02 1.47 16 14 N -0.60 -11.05 2.98 -173.03 -0.52 -11.57 16 15 C 0.50 8.97 7.77 -10.98 -0.09 8.88 16 16 O -0.54 -11.52 15.08 5.56 0.08 -11.43 16 17 C 0.10 1.40 4.50 -5.19 -0.02 1.37 16 18 N -0.71 -9.04 5.53 -61.47 -0.34 -9.38 16 19 C 0.52 6.70 7.91 -10.99 -0.09 6.61 16 20 O -0.52 -8.66 16.50 -14.35 -0.24 -8.90 16 21 C 0.04 0.42 5.22 36.01 0.19 0.60 16 22 O -0.29 -3.52 9.67 -39.34 -0.38 -3.90 16 23 C 0.13 1.37 6.69 -39.21 -0.26 1.10 16 24 C -0.21 -1.84 9.04 -39.43 -0.36 -2.20 16 25 C -0.08 -0.61 10.04 -39.61 -0.40 -1.00 16 26 C -0.16 -1.17 10.04 -39.56 -0.40 -1.56 16 27 C -0.08 -0.62 10.04 -39.61 -0.40 -1.01 16 28 C -0.15 -1.41 9.99 -39.44 -0.39 -1.81 16 29 C 0.11 2.56 5.38 -3.93 -0.02 2.53 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 37 H 0.10 1.20 7.94 -51.93 -0.41 0.78 16 38 H 0.10 1.27 7.70 -51.93 -0.40 0.87 16 39 H 0.41 5.01 7.44 -40.82 -0.30 4.71 16 40 H 0.10 0.71 7.65 -51.93 -0.40 0.31 16 41 H 0.10 0.73 7.68 -51.93 -0.40 0.33 16 42 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 43 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 45 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 46 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 47 H 0.12 3.33 5.12 -51.93 -0.27 3.07 16 48 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -33.14 393.27 -10.01 -43.15 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.01 Total: 5.74 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.15 Total: -1.11 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: -0.22 Total: -45.21 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.53 Total: -24.23 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.14 -10.01 -43.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597918573.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.760 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds