Wall clock time and date at job start Sat Apr 11 2020 07:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99817 * 2 1 4 4 H 1.48496 * 109.46776 * 270.00074 * 3 2 1 5 5 H 1.48497 * 109.47290 * 29.99991 * 3 2 1 6 6 H 1.48499 * 109.47167 * 150.00434 * 3 2 1 7 7 C 1.37882 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99663 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46844 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00119 * 270.00055 * 10 9 7 12 12 O 1.21287 * 120.00038 * 5.11181 * 11 10 9 13 13 C 1.50703 * 120.00188 * 185.11328 * 11 10 9 14 14 C 1.52999 * 109.47267 * 182.09564 * 13 11 10 15 15 C 1.50703 * 109.47267 * 179.97438 * 14 13 11 16 16 O 1.21283 * 119.99325 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00171 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00178 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47240 * 179.97438 * 18 17 15 20 20 C 1.30996 * 119.99929 * 126.28198 * 19 18 17 21 21 C 1.50702 * 120.00299 * 6.86362 * 20 19 18 22 22 O 1.42899 * 109.47520 * 136.03108 * 21 20 19 23 23 C 1.39932 * 119.99968 * 89.99856 * 10 9 7 24 24 C 1.38865 * 120.06958 * 248.66028 * 23 10 9 25 25 C 1.38115 * 119.92771 * 179.97438 * 24 23 10 26 26 C 1.38281 * 120.06892 * 359.97438 * 25 24 23 27 27 C 1.38284 * 120.14264 * 0.03963 * 26 25 24 28 28 C 1.38111 * 120.06911 * 359.96111 * 27 26 25 29 29 H 0.96992 * 120.00276 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47052 * 60.00140 * 9 7 2 31 31 H 1.09001 * 109.46972 * 299.99948 * 9 7 2 32 32 H 1.09004 * 109.46608 * 302.09329 * 13 11 10 33 33 H 1.08997 * 109.46994 * 62.09009 * 13 11 10 34 34 H 1.09000 * 109.46499 * 299.99845 * 14 13 11 35 35 H 1.09001 * 109.47315 * 59.99385 * 14 13 11 36 36 H 0.97005 * 119.99525 * 359.97438 * 17 15 14 37 37 H 1.09006 * 109.47273 * 300.00085 * 18 17 15 38 38 H 1.09001 * 109.47292 * 59.99723 * 18 17 15 39 39 H 1.07998 * 120.00054 * 306.28409 * 19 18 17 40 40 H 1.07996 * 120.00175 * 186.86088 * 20 19 18 41 41 H 1.09002 * 109.47427 * 256.03832 * 21 20 19 42 42 H 1.09003 * 109.46825 * 16.03243 * 21 20 19 43 43 H 0.96697 * 113.99999 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.03929 * 359.70441 * 24 23 10 45 45 H 1.08004 * 119.96468 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.92982 * 179.97438 * 26 25 24 47 47 H 1.08004 * 119.96360 * 179.97438 * 27 26 25 48 48 H 1.07997 * 120.03297 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6410 -4.1249 -1.1677 12 8 2.3204 -3.6059 -2.2160 13 6 3.5290 -5.3425 -1.1703 14 6 3.9226 -5.6836 -2.6089 15 6 4.8111 -6.9009 -2.6115 16 8 5.1013 -7.4419 -1.5655 17 7 5.2831 -7.3882 -3.7760 18 6 6.1473 -8.5711 -3.7784 19 6 6.5338 -8.9080 -5.1955 20 6 7.7971 -9.0386 -5.5164 21 6 8.8545 -9.0060 -4.4431 22 8 9.8048 -10.0470 -4.6787 23 6 2.6578 -4.1444 1.2113 24 6 3.9808 -3.9693 1.5952 25 6 4.4263 -4.4949 2.7922 26 6 3.5564 -5.1945 3.6082 27 6 2.2384 -5.3709 3.2286 28 6 1.7867 -4.8478 2.0329 29 1 -0.4850 0.8399 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 4.4268 -5.1386 -0.5866 33 1 2.9933 -6.1838 -0.7309 34 1 3.0248 -5.8874 -3.1925 35 1 4.4583 -4.8422 -3.0483 36 1 5.0506 -6.9556 -4.6125 37 1 7.0453 -8.3663 -3.1954 38 1 5.6125 -9.4127 -3.3382 39 1 5.7693 -9.0416 -5.9465 40 1 8.0809 -9.1698 -6.5501 41 1 9.3609 -8.0409 -4.4611 42 1 8.3881 -9.1535 -3.4690 43 1 10.5158 -10.0859 -4.0245 44 1 4.6617 -3.4264 0.9565 45 1 5.4553 -4.3594 3.0911 46 1 3.9072 -5.6050 4.5436 47 1 1.5615 -5.9182 3.8680 48 1 0.7572 -4.9855 1.7372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597994304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:13 Heat of formation + Delta-G solvation = -74.243739 kcal Electronic energy + Delta-G solvation = -29375.465102 eV Core-core repulsion = 25202.991689 eV Total energy + Delta-G solvation = -4172.473414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.16624 -39.59797 -38.11359 -37.84791 -35.90182 -34.88009 -33.44437 -32.88300 -32.35339 -30.62695 -29.34934 -28.12047 -27.16996 -25.80869 -24.53255 -22.76077 -22.31297 -21.90811 -20.54108 -19.24478 -18.90484 -18.06702 -17.49710 -16.74363 -16.58590 -16.32363 -16.01554 -15.85902 -15.44100 -15.27098 -14.92877 -14.81201 -14.35650 -14.22672 -14.12095 -13.68545 -13.52949 -13.20004 -13.09967 -12.84952 -12.68600 -12.52753 -12.24214 -12.10583 -11.85887 -11.45335 -11.35801 -11.18256 -11.11428 -10.87873 -10.81603 -10.68553 -10.64003 -10.18647 -10.06042 -9.72895 -9.67771 -9.30090 -9.17270 -8.62661 -8.52586 -8.43885 -7.67073 -6.06475 -4.10531 1.44147 1.62487 1.70876 2.56533 3.09386 3.27347 3.30471 3.36136 3.39682 3.82814 3.87941 4.09430 4.32216 4.43523 4.55679 4.66861 4.70961 4.93261 5.04436 5.09094 5.18989 5.19684 5.22820 5.26795 5.29124 5.35288 5.41262 5.48601 5.71777 5.75067 5.87117 5.98810 5.99142 6.03437 6.11346 6.12809 6.27791 6.31368 6.65474 6.78517 6.84923 6.99477 7.12983 7.23081 7.29257 7.34634 7.48508 7.88935 8.08979 8.18220 8.34236 8.83432 8.97965 9.53688 11.01937 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.002356 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.593703 B =11882.972510 C =13212.447449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.248 3.752 10 N -0.562 5.562 11 C 0.513 3.487 12 O -0.531 6.531 13 C -0.125 4.125 14 C -0.124 4.124 15 C 0.515 3.485 16 O -0.539 6.539 17 N -0.731 5.731 18 C 0.137 3.863 19 C -0.165 4.165 20 C -0.133 4.133 21 C 0.091 3.909 22 O -0.571 6.571 23 C 0.164 3.836 24 C -0.121 4.121 25 C -0.109 4.109 26 C -0.133 4.133 27 C -0.110 4.110 28 C -0.125 4.125 29 H 0.263 0.737 30 H 0.046 0.954 31 H 0.035 0.965 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.102 0.898 36 H 0.404 0.596 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.058 0.942 42 H 0.063 0.937 43 H 0.383 0.617 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.568 -18.268 -3.724 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.131 3.869 10 N -0.289 5.289 11 C 0.301 3.699 12 O -0.408 6.408 13 C -0.165 4.165 14 C -0.164 4.164 15 C 0.303 3.697 16 O -0.416 6.416 17 N -0.384 5.384 18 C 0.014 3.986 19 C -0.184 4.184 20 C -0.152 4.152 21 C 0.014 3.986 22 O -0.377 6.377 23 C 0.072 3.928 24 C -0.140 4.140 25 C -0.128 4.128 26 C -0.152 4.152 27 C -0.129 4.129 28 C -0.144 4.144 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.238 0.762 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.076 0.924 42 H 0.081 0.919 43 H 0.230 0.770 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.008 -18.334 -4.057 22.843 hybrid contribution 0.641 1.400 0.077 1.542 sum 13.649 -16.933 -3.980 22.110 Atomic orbital electron populations 1.69923 1.05963 1.27056 1.50456 1.24917 0.94897 0.99197 0.95056 0.86485 0.79709 0.82989 0.78189 1.20530 1.21119 1.19907 1.21353 0.93345 0.90424 1.51015 0.92415 1.19423 0.87112 0.81781 0.98621 1.45952 1.45799 1.34665 1.02534 1.20382 0.81029 0.84854 0.83679 1.90678 1.57574 1.61813 1.30685 1.21431 1.00990 0.97360 0.96768 1.21386 1.00236 0.95745 0.99023 1.20902 0.80189 0.85466 0.83175 1.90707 1.58842 1.60620 1.31411 1.45985 1.51881 1.30941 1.09629 1.20447 0.94999 0.88621 0.94536 1.22891 0.96694 1.01453 0.97326 1.22680 0.93302 0.99362 0.99849 1.21349 0.89647 0.90646 0.97006 1.86470 1.40823 1.54553 1.55858 1.17701 0.92537 0.94508 0.88081 1.21340 0.95751 0.99844 0.97092 1.20960 0.99516 0.98075 0.94240 1.21049 0.93884 1.00487 0.99739 1.20953 0.95819 1.00003 0.96111 1.21298 1.00033 0.97877 0.95224 0.92689 0.93553 0.94714 0.88570 0.88704 0.87937 0.87973 0.76185 0.90546 0.90611 0.85708 0.86014 0.92435 0.91919 0.76952 0.86021 0.86191 0.86431 0.86146 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.84 9.39 -34.44 -0.32 -15.16 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.25 6.50 5.07 -5.19 -0.03 6.47 16 10 N -0.56 -12.14 2.50 -114.74 -0.29 -12.42 16 11 C 0.51 10.47 7.55 -10.99 -0.08 10.38 16 12 O -0.53 -12.57 15.62 5.55 0.09 -12.48 16 13 C -0.12 -1.96 3.82 -27.88 -0.11 -2.07 16 14 C -0.12 -1.60 4.99 -27.88 -0.14 -1.74 16 15 C 0.52 6.38 7.83 -10.99 -0.09 6.30 16 16 O -0.54 -8.48 15.98 5.55 0.09 -8.39 16 17 N -0.73 -6.62 5.55 -61.47 -0.34 -6.96 16 18 C 0.14 1.14 5.73 -5.20 -0.03 1.11 16 19 C -0.17 -1.08 9.63 -36.02 -0.35 -1.42 16 20 C -0.13 -0.91 9.89 -36.02 -0.36 -1.27 16 21 C 0.09 0.61 6.92 36.01 0.25 0.86 16 22 O -0.57 -4.16 13.64 -35.23 -0.48 -4.64 16 23 C 0.16 3.05 4.41 -83.69 -0.37 2.68 16 24 C -0.12 -2.04 8.38 -39.39 -0.33 -2.37 16 25 C -0.11 -1.54 10.04 -39.61 -0.40 -1.94 16 26 C -0.13 -1.75 10.04 -39.55 -0.40 -2.15 16 27 C -0.11 -1.53 10.04 -39.61 -0.40 -1.93 16 28 C -0.12 -2.06 9.72 -39.39 -0.38 -2.45 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.05 1.34 7.50 -51.93 -0.39 0.95 16 31 H 0.03 0.93 7.88 -51.93 -0.41 0.52 16 32 H 0.10 1.50 6.68 -51.93 -0.35 1.15 16 33 H 0.09 1.46 8.10 -51.93 -0.42 1.04 16 34 H 0.10 1.26 8.08 -51.93 -0.42 0.84 16 35 H 0.10 1.28 8.12 -51.93 -0.42 0.86 16 36 H 0.40 2.70 8.46 -40.82 -0.35 2.35 16 37 H 0.08 0.67 5.41 -51.93 -0.28 0.38 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.06 0.41 5.63 -51.93 -0.29 0.11 16 43 H 0.38 1.08 9.12 45.56 0.42 1.49 16 44 H 0.12 2.05 8.01 -52.49 -0.42 1.63 16 45 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 46 H 0.12 1.21 8.06 -52.48 -0.42 0.79 16 47 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 48 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 410.09 15.07 6.18 6.18 Total: -1.00 -36.12 410.09 -8.92 -45.04 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -6.26 Total: 5.56 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -3.62 Total: -3.04 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.11 Total: -45.16 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.31 Total: -25.51 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.12 -8.92 -45.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597994304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.202 kcal (2) G-P(sol) polarization free energy of solvation -36.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds