Wall clock time and date at job start Sat Apr 11 2020 07:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86801 * 119.99817 * 2 1 4 4 H 1.48496 * 109.46776 * 270.00074 * 3 2 1 5 5 H 1.48497 * 109.47290 * 29.99991 * 3 2 1 6 6 H 1.48499 * 109.47167 * 150.00434 * 3 2 1 7 7 C 1.37882 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99663 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46844 * 180.02562 * 9 7 2 11 11 C 1.34772 * 120.00119 * 270.00055 * 10 9 7 12 12 O 1.21287 * 120.00038 * 5.11181 * 11 10 9 13 13 C 1.50703 * 120.00188 * 185.11328 * 11 10 9 14 14 C 1.52999 * 109.47267 * 182.09564 * 13 11 10 15 15 C 1.50703 * 109.47267 * 179.97438 * 14 13 11 16 16 O 1.21283 * 119.99325 * 359.97438 * 15 14 13 17 17 N 1.34772 * 120.00171 * 179.97438 * 15 14 13 18 18 C 1.46496 * 120.00178 * 179.97438 * 17 15 14 19 19 C 1.50701 * 109.47240 * 179.97438 * 18 17 15 20 20 C 1.30996 * 119.99929 * 126.28198 * 19 18 17 21 21 C 1.50702 * 120.00299 * 6.86362 * 20 19 18 22 22 O 1.42899 * 109.47520 * 136.03108 * 21 20 19 23 23 C 1.39932 * 119.99968 * 89.99856 * 10 9 7 24 24 C 1.38865 * 120.06958 * 248.66028 * 23 10 9 25 25 C 1.38115 * 119.92771 * 179.97438 * 24 23 10 26 26 C 1.38281 * 120.06892 * 359.97438 * 25 24 23 27 27 C 1.38284 * 120.14264 * 0.03963 * 26 25 24 28 28 C 1.38111 * 120.06911 * 359.96111 * 27 26 25 29 29 H 0.96992 * 120.00276 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47052 * 60.00140 * 9 7 2 31 31 H 1.09001 * 109.46972 * 299.99948 * 9 7 2 32 32 H 1.09004 * 109.46608 * 302.09329 * 13 11 10 33 33 H 1.08997 * 109.46994 * 62.09009 * 13 11 10 34 34 H 1.09000 * 109.46499 * 299.99845 * 14 13 11 35 35 H 1.09001 * 109.47315 * 59.99385 * 14 13 11 36 36 H 0.97005 * 119.99525 * 359.97438 * 17 15 14 37 37 H 1.09006 * 109.47273 * 300.00085 * 18 17 15 38 38 H 1.09001 * 109.47292 * 59.99723 * 18 17 15 39 39 H 1.07998 * 120.00054 * 306.28409 * 19 18 17 40 40 H 1.07996 * 120.00175 * 186.86088 * 20 19 18 41 41 H 1.09002 * 109.47427 * 256.03832 * 21 20 19 42 42 H 1.09003 * 109.46825 * 16.03243 * 21 20 19 43 43 H 0.96697 * 113.99999 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.03929 * 359.70441 * 24 23 10 45 45 H 1.08004 * 119.96468 * 179.97438 * 25 24 23 46 46 H 1.08003 * 119.92982 * 179.97438 * 26 25 24 47 47 H 1.08004 * 119.96360 * 179.97438 * 27 26 25 48 48 H 1.07997 * 120.03297 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6410 -4.1249 -1.1677 12 8 2.3204 -3.6059 -2.2160 13 6 3.5290 -5.3425 -1.1703 14 6 3.9226 -5.6836 -2.6089 15 6 4.8111 -6.9009 -2.6115 16 8 5.1013 -7.4419 -1.5655 17 7 5.2831 -7.3882 -3.7760 18 6 6.1473 -8.5711 -3.7784 19 6 6.5338 -8.9080 -5.1955 20 6 7.7971 -9.0386 -5.5164 21 6 8.8545 -9.0060 -4.4431 22 8 9.8048 -10.0470 -4.6787 23 6 2.6578 -4.1444 1.2113 24 6 3.9808 -3.9693 1.5952 25 6 4.4263 -4.4949 2.7922 26 6 3.5564 -5.1945 3.6082 27 6 2.2384 -5.3709 3.2286 28 6 1.7867 -4.8478 2.0329 29 1 -0.4850 0.8399 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8897 32 1 4.4268 -5.1386 -0.5866 33 1 2.9933 -6.1838 -0.7309 34 1 3.0248 -5.8874 -3.1925 35 1 4.4583 -4.8422 -3.0483 36 1 5.0506 -6.9556 -4.6125 37 1 7.0453 -8.3663 -3.1954 38 1 5.6125 -9.4127 -3.3382 39 1 5.7693 -9.0416 -5.9465 40 1 8.0809 -9.1698 -6.5501 41 1 9.3609 -8.0409 -4.4611 42 1 8.3881 -9.1535 -3.4690 43 1 10.5158 -10.0859 -4.0245 44 1 4.6617 -3.4264 0.9565 45 1 5.4553 -4.3594 3.0911 46 1 3.9072 -5.6050 4.5436 47 1 1.5615 -5.9182 3.8680 48 1 0.7572 -4.9855 1.7372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597994304.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:12 Heat of formation + Delta-G solvation = -99.989799 kcal Electronic energy + Delta-G solvation = -29376.581535 eV Core-core repulsion = 25202.991689 eV Total energy + Delta-G solvation = -4173.589847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.53516 -40.71282 -39.46568 -38.45212 -36.62942 -36.51873 -34.82650 -34.25776 -33.69560 -31.81468 -30.86243 -29.46165 -28.39225 -26.73586 -25.68413 -24.45935 -23.56055 -23.27491 -21.49673 -20.38914 -19.85398 -18.82847 -18.68751 -18.52588 -17.63692 -17.41646 -17.21871 -17.11394 -16.95135 -16.37272 -16.15735 -15.97244 -15.53077 -15.41569 -15.24615 -14.76279 -14.57986 -14.36813 -14.27827 -14.12058 -13.87572 -13.62602 -13.55149 -13.44098 -13.24719 -13.08058 -12.92177 -12.67260 -12.42614 -12.25284 -12.12902 -12.08929 -11.89122 -11.72430 -11.21983 -11.02460 -10.94118 -10.67112 -10.38597 -10.07328 -9.89176 -9.81001 -9.24037 -8.24767 -6.39037 0.38255 0.51940 0.90152 1.34833 1.37481 1.47317 1.57130 1.66889 2.05125 2.34965 2.47350 2.88943 3.05020 3.44456 3.50250 3.78340 3.84335 4.01378 4.04164 4.09191 4.10496 4.13271 4.20039 4.32089 4.44043 4.52435 4.55891 4.60966 4.67581 4.69585 4.77256 4.80764 4.92041 4.93538 5.01026 5.10607 5.16352 5.34013 5.42458 5.48480 5.54746 5.63315 5.67203 5.67587 5.77446 6.00939 6.08696 6.47919 6.64677 6.71920 6.83145 7.17362 7.21909 7.35916 8.82549 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010806 B = 0.002356 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.593703 B =11882.972510 C =13212.447449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.009 3.991 3 Si 0.967 3.033 4 H -0.276 1.276 5 H -0.274 1.274 6 H -0.265 1.265 7 C -0.538 4.538 8 H 0.051 0.949 9 C 0.266 3.734 10 N -0.565 5.565 11 C 0.507 3.493 12 O -0.573 6.573 13 C -0.106 4.106 14 C -0.119 4.119 15 C 0.522 3.478 16 O -0.574 6.574 17 N -0.715 5.715 18 C 0.136 3.864 19 C -0.160 4.160 20 C -0.139 4.139 21 C 0.087 3.913 22 O -0.590 6.590 23 C 0.126 3.874 24 C -0.135 4.135 25 C -0.106 4.106 26 C -0.121 4.121 27 C -0.105 4.105 28 C -0.141 4.141 29 H 0.268 0.732 30 H 0.008 0.992 31 H 0.019 0.981 32 H 0.100 0.900 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.417 0.583 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.141 0.859 40 H 0.128 0.872 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.400 0.600 44 H 0.112 0.888 45 H 0.151 0.849 46 H 0.159 0.841 47 H 0.153 0.847 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.645 -19.118 -2.613 24.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.791 3.209 4 H -0.202 1.202 5 H -0.199 1.199 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.069 0.931 9 C 0.146 3.854 10 N -0.292 5.292 11 C 0.297 3.703 12 O -0.453 6.453 13 C -0.147 4.147 14 C -0.159 4.159 15 C 0.309 3.691 16 O -0.454 6.454 17 N -0.367 5.367 18 C 0.013 3.987 19 C -0.178 4.178 20 C -0.158 4.158 21 C 0.010 3.990 22 O -0.399 6.399 23 C 0.036 3.964 24 C -0.155 4.155 25 C -0.124 4.124 26 C -0.139 4.139 27 C -0.123 4.123 28 C -0.160 4.160 29 H 0.077 0.923 30 H 0.026 0.974 31 H 0.037 0.963 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.254 0.746 37 H 0.092 0.908 38 H 0.087 0.913 39 H 0.159 0.841 40 H 0.146 0.854 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.250 0.750 44 H 0.130 0.870 45 H 0.169 0.831 46 H 0.176 0.824 47 H 0.171 0.829 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.117 -19.218 -2.950 24.629 hybrid contribution 0.013 1.574 -0.203 1.587 sum 15.130 -17.645 -3.153 23.456 Atomic orbital electron populations 1.70039 1.07465 1.28223 1.50914 1.25838 0.95849 1.02958 0.94398 0.85418 0.78686 0.78381 0.78377 1.20163 1.19896 1.18944 1.21582 0.93106 0.91706 1.51304 0.93104 1.18846 0.87483 0.83221 0.95859 1.45804 1.45101 1.33787 1.04509 1.21215 0.80796 0.85613 0.82686 1.90638 1.59315 1.63321 1.32009 1.21284 0.99798 0.94761 0.98823 1.21327 1.00889 0.96461 0.97232 1.20641 0.79947 0.84980 0.83522 1.90693 1.60304 1.61625 1.32772 1.45848 1.50856 1.30780 1.09245 1.20499 0.94520 0.87829 0.95829 1.22852 0.97023 1.01472 0.96456 1.22840 0.93478 0.99189 1.00276 1.21397 0.89752 0.90917 0.96933 1.86422 1.41627 1.54808 1.57010 1.17963 0.93956 0.96811 0.87684 1.21384 0.94854 1.00766 0.98461 1.21341 1.01258 0.96960 0.92861 1.21551 0.93082 0.98640 1.00605 1.21343 0.96975 0.99020 0.94994 1.21408 0.99607 0.98635 0.96372 0.92317 0.97423 0.96258 0.88199 0.88239 0.87259 0.87529 0.74606 0.90775 0.91268 0.84097 0.85410 0.91683 0.91983 0.74984 0.86953 0.83126 0.82361 0.82934 0.86595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.18 16 2 C 0.01 0.50 5.46 84.66 0.46 0.97 16 3 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 5 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -31.77 9.39 25.60 0.24 -31.53 16 8 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 9 C 0.27 14.80 5.07 85.63 0.43 15.23 16 10 N -0.57 -25.78 2.50 -635.31 -1.59 -27.37 16 11 C 0.51 21.75 7.55 87.66 0.66 22.41 16 12 O -0.57 -28.64 15.62 -3.05 -0.05 -28.68 16 13 C -0.11 -3.42 3.82 29.85 0.11 -3.31 16 14 C -0.12 -3.07 4.99 29.85 0.15 -2.93 16 15 C 0.52 12.55 7.83 87.66 0.69 13.24 16 16 O -0.57 -17.74 15.98 -3.04 -0.05 -17.78 16 17 N -0.71 -12.00 5.55 -466.79 -2.59 -14.59 16 18 C 0.14 2.09 5.73 85.63 0.49 2.58 16 19 C -0.16 -1.80 9.63 25.65 0.25 -1.55 16 20 C -0.14 -1.69 9.89 25.65 0.25 -1.44 16 21 C 0.09 1.06 6.92 71.24 0.49 1.55 16 22 O -0.59 -7.90 13.64 -148.98 -2.03 -9.93 16 23 C 0.13 4.84 4.41 38.15 0.17 5.00 16 24 C -0.14 -4.53 8.38 22.39 0.19 -4.34 16 25 C -0.11 -2.71 10.04 22.25 0.22 -2.49 16 26 C -0.12 -2.72 10.04 22.29 0.22 -2.49 16 27 C -0.11 -2.65 10.04 22.25 0.22 -2.43 16 28 C -0.14 -4.68 9.72 22.39 0.22 -4.46 16 29 H 0.27 15.26 8.31 -92.71 -0.77 14.48 16 30 H 0.01 0.48 7.50 -2.39 -0.02 0.46 16 31 H 0.02 1.11 7.88 -2.39 -0.02 1.10 16 32 H 0.10 3.15 6.68 -2.39 -0.02 3.14 16 33 H 0.10 3.11 8.10 -2.39 -0.02 3.09 16 34 H 0.11 2.68 8.08 -2.39 -0.02 2.66 16 35 H 0.11 2.67 8.12 -2.39 -0.02 2.65 16 36 H 0.42 4.86 8.46 -92.70 -0.78 4.07 16 37 H 0.07 1.21 5.41 -2.38 -0.01 1.20 16 38 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.14 1.13 8.06 -2.91 -0.02 1.11 16 40 H 0.13 1.41 8.06 -2.91 -0.02 1.39 16 41 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 0.75 5.63 -2.39 -0.01 0.73 16 43 H 0.40 1.80 9.12 -74.06 -0.68 1.12 16 44 H 0.11 3.87 8.01 -2.91 -0.02 3.84 16 45 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 46 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 47 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 48 H 0.12 3.90 8.06 -2.91 -0.02 3.87 16 Total: -1.00 -81.22 410.09 1.01 -80.21 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -0.47 Total: 22.79 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 5.48 Total: 4.02 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -3.89 Total: -98.14 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -2.13 Total: -56.40 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -81.22 1.01 -80.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597994304.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.776 kcal (2) G-P(sol) polarization free energy of solvation -81.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds