Wall clock time and date at job start Sat Apr 11 2020 07:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48508 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47454 * 300.00265 * 3 2 1 6 6 H 1.48499 * 109.46992 * 60.00771 * 3 2 1 7 7 C 1.37875 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00476 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99566 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00030 * 270.00389 * 10 9 7 12 12 O 1.21283 * 120.00236 * 4.45205 * 11 10 9 13 13 C 1.50707 * 119.99667 * 184.45100 * 11 10 9 14 14 C 1.52994 * 109.46774 * 174.45902 * 13 11 10 15 15 C 1.50707 * 109.47078 * 180.02562 * 14 13 11 16 16 O 1.21279 * 119.99591 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00134 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00018 * 179.97438 * 17 15 14 19 19 C 1.50692 * 109.47218 * 179.97438 * 18 17 15 20 20 C 1.30997 * 120.00251 * 124.99715 * 19 18 17 21 21 C 1.50704 * 120.00332 * 179.97438 * 20 19 18 22 22 O 1.42905 * 109.46825 * 134.99904 * 21 20 19 23 23 C 1.39923 * 119.99818 * 89.99570 * 10 9 7 24 24 C 1.38872 * 120.07336 * 246.80191 * 23 10 9 25 25 C 1.38113 * 119.92646 * 179.97438 * 24 23 10 26 26 C 1.38284 * 120.07236 * 359.97313 * 25 24 23 27 27 C 1.38277 * 120.14310 * 0.04475 * 26 25 24 28 28 C 1.38117 * 120.06854 * 359.96101 * 27 26 25 29 29 H 0.97008 * 120.00038 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47188 * 60.00210 * 9 7 2 31 31 H 1.08996 * 109.46900 * 299.99790 * 9 7 2 32 32 H 1.08998 * 109.47306 * 294.45964 * 13 11 10 33 33 H 1.08998 * 109.46760 * 54.46246 * 13 11 10 34 34 H 1.09004 * 109.47662 * 300.00192 * 14 13 11 35 35 H 1.09001 * 109.47659 * 60.00410 * 14 13 11 36 36 H 0.97003 * 119.99559 * 359.97438 * 17 15 14 37 37 H 1.08998 * 109.46976 * 299.99436 * 18 17 15 38 38 H 1.09005 * 109.47329 * 59.99069 * 18 17 15 39 39 H 1.08006 * 120.00186 * 304.99676 * 19 18 17 40 40 H 1.08002 * 120.00193 * 0.02562 * 20 19 18 41 41 H 1.09001 * 109.47447 * 255.00450 * 21 20 19 42 42 H 1.09001 * 109.47015 * 15.00695 * 21 20 19 43 43 H 0.96698 * 113.99613 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.03472 * 359.70196 * 24 23 10 45 45 H 1.07998 * 119.96255 * 179.97438 * 25 24 23 46 46 H 1.08010 * 119.92736 * 180.02562 * 26 25 24 47 47 H 1.07999 * 119.96673 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.03237 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6399 -4.1244 -1.1695 12 8 2.3089 -3.6121 -2.2178 13 6 3.5400 -5.3332 -1.1726 14 6 3.7755 -5.7898 -2.6137 15 6 4.6750 -6.9990 -2.6169 16 8 5.0875 -7.4506 -1.5696 17 7 5.0219 -7.5778 -3.7836 18 6 5.8968 -8.7528 -3.7866 19 6 6.1287 -9.2027 -5.2060 20 6 7.3503 -9.3290 -5.6618 21 6 7.5822 -9.7795 -7.0812 22 8 8.5822 -8.9562 -7.6848 23 6 2.6584 -4.1450 1.2094 24 6 3.9909 -4.0034 1.5744 25 6 4.4372 -4.5295 2.7708 26 6 3.5588 -5.1961 3.6053 27 6 2.2315 -5.3391 3.2447 28 6 1.7789 -4.8154 2.0494 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8897 32 1 4.4941 -5.0769 -0.7122 33 1 3.0689 -6.1383 -0.6087 34 1 2.8213 -6.0461 -3.0743 35 1 4.2465 -4.9847 -3.1777 36 1 4.6922 -7.2163 -4.6212 37 1 6.8508 -8.4966 -3.3259 38 1 5.4257 -9.5581 -3.2228 39 1 5.2877 -9.4211 -5.8475 40 1 8.1913 -9.1111 -5.0203 41 1 7.9160 -10.8172 -7.0831 42 1 6.6533 -9.6956 -7.6454 43 1 8.7833 -9.1899 -8.6013 44 1 4.6782 -3.4864 0.9213 45 1 5.4733 -4.4202 3.0550 46 1 3.9102 -5.6063 4.5406 47 1 1.5481 -5.8606 3.8983 48 1 0.7423 -4.9277 1.7682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597994305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:16 Heat of formation + Delta-G solvation = -80.814415 kcal Electronic energy + Delta-G solvation = -29116.923139 eV Core-core repulsion = 24944.164800 eV Total energy + Delta-G solvation = -4172.758340 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.12679 -39.54158 -38.05956 -37.73548 -35.93082 -34.86329 -33.43726 -32.87647 -32.34985 -30.60654 -29.33259 -28.62561 -27.34123 -25.38445 -23.76814 -22.70799 -22.26644 -21.84684 -20.76593 -19.91997 -18.89967 -17.89135 -17.47159 -16.72127 -16.47432 -16.20977 -16.02058 -15.84869 -15.40201 -15.30448 -15.10048 -14.81880 -14.27745 -14.20659 -14.07220 -13.57713 -13.47726 -13.10704 -13.04394 -12.76177 -12.67520 -12.45231 -12.22741 -12.09434 -11.83195 -11.51302 -11.43211 -11.17060 -11.09006 -10.87384 -10.85146 -10.78250 -10.63915 -10.17088 -10.05601 -9.70245 -9.65483 -9.28425 -9.20734 -8.60568 -8.52677 -8.43407 -7.62767 -6.05333 -4.09240 1.45985 1.64750 1.73250 2.60591 3.12817 3.29436 3.30540 3.37766 3.42852 3.77159 3.85584 4.12167 4.44420 4.45153 4.51068 4.67899 4.81101 4.86537 5.01873 5.10271 5.18688 5.23646 5.24084 5.25401 5.30115 5.30815 5.43175 5.48045 5.73727 5.77675 5.89492 6.01023 6.05112 6.06598 6.13810 6.14477 6.29929 6.33746 6.67770 6.80903 6.86265 7.01181 7.09049 7.25043 7.32976 7.36211 7.50475 7.90411 8.12869 8.19549 8.35762 8.85094 8.99697 9.55108 11.03067 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010382 B = 0.002265 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.390573 B =12361.281722 C =14114.271552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.058 0.942 9 C 0.247 3.753 10 N -0.561 5.561 11 C 0.513 3.487 12 O -0.531 6.531 13 C -0.124 4.124 14 C -0.124 4.124 15 C 0.516 3.484 16 O -0.539 6.539 17 N -0.732 5.732 18 C 0.150 3.850 19 C -0.164 4.164 20 C -0.135 4.135 21 C 0.103 3.897 22 O -0.570 6.570 23 C 0.164 3.836 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.134 4.134 27 C -0.110 4.110 28 C -0.125 4.125 29 H 0.263 0.737 30 H 0.047 0.953 31 H 0.035 0.965 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.404 0.596 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.382 0.618 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.117 0.883 47 H 0.120 0.880 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.439 -21.096 -7.220 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.561 4.561 8 H 0.077 0.923 9 C 0.130 3.870 10 N -0.289 5.289 11 C 0.301 3.699 12 O -0.407 6.407 13 C -0.165 4.165 14 C -0.164 4.164 15 C 0.303 3.697 16 O -0.415 6.415 17 N -0.385 5.385 18 C 0.026 3.974 19 C -0.182 4.182 20 C -0.155 4.155 21 C 0.026 3.974 22 O -0.376 6.376 23 C 0.072 3.928 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.153 4.153 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.115 0.885 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.238 0.762 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.230 0.770 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.138 0.862 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 11.348 -20.712 -6.460 24.484 hybrid contribution 0.249 0.879 -0.864 1.258 sum 11.597 -19.832 -7.325 24.114 Atomic orbital electron populations 1.69935 1.05966 1.26933 1.50577 1.24915 0.94900 0.99217 0.95063 0.86428 0.80045 0.83313 0.77573 1.19769 1.20860 1.20947 1.21400 0.93414 0.90419 1.50854 0.92336 1.19434 0.87145 0.81794 0.98644 1.45961 1.45732 1.34614 1.02556 1.20391 0.81124 0.84754 0.83666 1.90676 1.57540 1.61832 1.30688 1.21427 1.01246 0.97079 0.96711 1.21388 1.00366 0.95653 0.99001 1.20888 0.80820 0.84806 0.83199 1.90707 1.54922 1.64533 1.31387 1.45995 1.51742 1.31425 1.09377 1.20270 0.95121 0.88178 0.93798 1.22868 0.97415 1.00812 0.97113 1.22727 0.97670 0.99133 0.95921 1.21155 0.91159 0.93544 0.91563 1.86526 1.59954 1.59499 1.31601 1.17708 0.92463 0.94566 0.88043 1.21333 0.95603 0.99996 0.97213 1.20957 0.99495 0.98109 0.94128 1.21044 0.93760 1.00758 0.99702 1.20946 0.95759 0.99974 0.96168 1.21280 0.99994 0.98097 0.95149 0.92756 0.93532 0.94683 0.88473 0.88835 0.88139 0.87811 0.76214 0.90983 0.90542 0.86392 0.86244 0.92458 0.92854 0.77045 0.86030 0.86183 0.86446 0.86166 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.28 55.43 0.74 -25.93 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 4 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 9 C 0.25 6.53 5.07 -5.19 -0.03 6.50 16 10 N -0.56 -12.27 2.51 -114.73 -0.29 -12.56 16 11 C 0.51 10.62 7.53 -10.98 -0.08 10.54 16 12 O -0.53 -12.72 15.61 5.55 0.09 -12.63 16 13 C -0.12 -2.00 3.65 -27.88 -0.10 -2.10 16 14 C -0.12 -1.65 5.01 -27.88 -0.14 -1.79 16 15 C 0.52 6.64 7.83 -10.98 -0.09 6.55 16 16 O -0.54 -8.75 15.98 5.56 0.09 -8.66 16 17 N -0.73 -7.00 5.55 -61.48 -0.34 -7.34 16 18 C 0.15 1.29 6.11 -5.20 -0.03 1.25 16 19 C -0.16 -1.06 9.22 -36.03 -0.33 -1.39 16 20 C -0.14 -0.92 9.50 -36.02 -0.34 -1.26 16 21 C 0.10 0.56 7.46 36.01 0.27 0.83 16 22 O -0.57 -3.90 13.64 -35.23 -0.48 -4.38 16 23 C 0.16 3.11 4.42 -83.69 -0.37 2.74 16 24 C -0.12 -2.09 8.46 -39.39 -0.33 -2.42 16 25 C -0.11 -1.56 10.04 -39.61 -0.40 -1.96 16 26 C -0.13 -1.80 10.04 -39.55 -0.40 -2.20 16 27 C -0.11 -1.55 10.04 -39.61 -0.40 -1.94 16 28 C -0.13 -2.11 9.64 -39.39 -0.38 -2.49 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.05 1.35 7.49 -51.93 -0.39 0.96 16 31 H 0.04 0.95 7.83 -51.93 -0.41 0.54 16 32 H 0.10 1.55 6.95 -51.93 -0.36 1.19 16 33 H 0.09 1.47 7.97 -51.93 -0.41 1.05 16 34 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 35 H 0.10 1.36 8.04 -51.93 -0.42 0.95 16 36 H 0.40 2.93 8.46 -40.82 -0.35 2.58 16 37 H 0.07 0.69 7.79 -51.93 -0.40 0.28 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.12 0.59 7.90 -52.48 -0.41 0.18 16 40 H 0.12 0.88 7.84 -52.49 -0.41 0.47 16 41 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 42 H 0.05 0.22 7.86 -51.93 -0.41 -0.18 16 43 H 0.38 0.78 9.12 45.56 0.42 1.19 16 44 H 0.12 2.09 7.90 -52.49 -0.41 1.67 16 45 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 46 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 47 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 48 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 414.25 15.07 6.24 6.24 Total: -1.00 -36.65 414.25 -9.02 -45.67 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -6.48 Total: 5.22 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -3.57 Total: -2.77 kcal Atomic # 7 Polarization: -45.93 SS G_CDS: 0.11 Total: -45.82 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.31 Total: -25.67 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.65 -9.02 -45.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597994305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.144 kcal (2) G-P(sol) polarization free energy of solvation -36.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds