Wall clock time and date at job start Sat Apr 11 2020 07:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86800 * 120.00225 * 2 1 4 4 H 1.48508 * 109.47205 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47454 * 300.00265 * 3 2 1 6 6 H 1.48499 * 109.46992 * 60.00771 * 3 2 1 7 7 C 1.37875 * 120.00165 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00476 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99566 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47103 * 179.97438 * 9 7 2 11 11 C 1.34775 * 120.00030 * 270.00389 * 10 9 7 12 12 O 1.21283 * 120.00236 * 4.45205 * 11 10 9 13 13 C 1.50707 * 119.99667 * 184.45100 * 11 10 9 14 14 C 1.52994 * 109.46774 * 174.45902 * 13 11 10 15 15 C 1.50707 * 109.47078 * 180.02562 * 14 13 11 16 16 O 1.21279 * 119.99591 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00134 * 180.02562 * 15 14 13 18 18 C 1.46496 * 120.00018 * 179.97438 * 17 15 14 19 19 C 1.50692 * 109.47218 * 179.97438 * 18 17 15 20 20 C 1.30997 * 120.00251 * 124.99715 * 19 18 17 21 21 C 1.50704 * 120.00332 * 179.97438 * 20 19 18 22 22 O 1.42905 * 109.46825 * 134.99904 * 21 20 19 23 23 C 1.39923 * 119.99818 * 89.99570 * 10 9 7 24 24 C 1.38872 * 120.07336 * 246.80191 * 23 10 9 25 25 C 1.38113 * 119.92646 * 179.97438 * 24 23 10 26 26 C 1.38284 * 120.07236 * 359.97313 * 25 24 23 27 27 C 1.38277 * 120.14310 * 0.04475 * 26 25 24 28 28 C 1.38117 * 120.06854 * 359.96101 * 27 26 25 29 29 H 0.97008 * 120.00038 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47188 * 60.00210 * 9 7 2 31 31 H 1.08996 * 109.46900 * 299.99790 * 9 7 2 32 32 H 1.08998 * 109.47306 * 294.45964 * 13 11 10 33 33 H 1.08998 * 109.46760 * 54.46246 * 13 11 10 34 34 H 1.09004 * 109.47662 * 300.00192 * 14 13 11 35 35 H 1.09001 * 109.47659 * 60.00410 * 14 13 11 36 36 H 0.97003 * 119.99559 * 359.97438 * 17 15 14 37 37 H 1.08998 * 109.46976 * 299.99436 * 18 17 15 38 38 H 1.09005 * 109.47329 * 59.99069 * 18 17 15 39 39 H 1.08006 * 120.00186 * 304.99676 * 19 18 17 40 40 H 1.08002 * 120.00193 * 0.02562 * 20 19 18 41 41 H 1.09001 * 109.47447 * 255.00450 * 21 20 19 42 42 H 1.09001 * 109.47015 * 15.00695 * 21 20 19 43 43 H 0.96698 * 113.99613 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.03472 * 359.70196 * 24 23 10 45 45 H 1.07998 * 119.96255 * 179.97438 * 25 24 23 46 46 H 1.08010 * 119.92736 * 180.02562 * 26 25 24 47 47 H 1.07999 * 119.96673 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.03237 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6399 -4.1244 -1.1695 12 8 2.3089 -3.6121 -2.2178 13 6 3.5400 -5.3332 -1.1726 14 6 3.7755 -5.7898 -2.6137 15 6 4.6750 -6.9990 -2.6169 16 8 5.0875 -7.4506 -1.5696 17 7 5.0219 -7.5778 -3.7836 18 6 5.8968 -8.7528 -3.7866 19 6 6.1287 -9.2027 -5.2060 20 6 7.3503 -9.3290 -5.6618 21 6 7.5822 -9.7795 -7.0812 22 8 8.5822 -8.9562 -7.6848 23 6 2.6584 -4.1450 1.2094 24 6 3.9909 -4.0034 1.5744 25 6 4.4372 -4.5295 2.7708 26 6 3.5588 -5.1961 3.6053 27 6 2.2315 -5.3391 3.2447 28 6 1.7789 -4.8154 2.0494 29 1 -0.4850 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5570 0.8897 32 1 4.4941 -5.0769 -0.7122 33 1 3.0689 -6.1383 -0.6087 34 1 2.8213 -6.0461 -3.0743 35 1 4.2465 -4.9847 -3.1777 36 1 4.6922 -7.2163 -4.6212 37 1 6.8508 -8.4966 -3.3259 38 1 5.4257 -9.5581 -3.2228 39 1 5.2877 -9.4211 -5.8475 40 1 8.1913 -9.1111 -5.0203 41 1 7.9160 -10.8172 -7.0831 42 1 6.6533 -9.6956 -7.6454 43 1 8.7833 -9.1899 -8.6013 44 1 4.6782 -3.4864 0.9213 45 1 5.4733 -4.4202 3.0550 46 1 3.9102 -5.6063 4.5406 47 1 1.5481 -5.8606 3.8983 48 1 0.7423 -4.9277 1.7682 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597994305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:15 Heat of formation + Delta-G solvation = -107.005048 kcal Electronic energy + Delta-G solvation = -29118.058851 eV Core-core repulsion = 24944.164800 eV Total energy + Delta-G solvation = -4173.894051 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.54143 -40.68992 -39.46316 -38.22377 -36.68312 -36.53364 -34.83550 -34.24704 -33.72186 -31.81860 -30.86751 -29.62076 -28.85877 -26.69411 -24.90794 -24.18201 -23.49525 -23.23865 -21.63161 -20.61784 -20.36740 -18.87233 -18.71311 -18.23053 -17.70796 -17.39527 -17.16136 -17.09003 -16.94669 -16.40390 -16.10330 -15.82459 -15.75136 -15.41541 -15.23045 -14.72622 -14.58514 -14.29938 -14.28056 -14.12920 -13.79697 -13.60336 -13.49851 -13.43189 -13.08491 -13.07194 -12.94578 -12.68658 -12.43091 -12.26440 -12.12079 -12.09950 -12.02549 -11.71531 -11.33803 -11.01901 -10.95012 -10.67780 -10.35084 -10.10795 -9.98099 -9.81251 -9.21730 -8.25409 -6.39640 0.38058 0.51933 0.92201 1.34180 1.35917 1.47998 1.56772 1.66771 2.04793 2.34837 2.47158 2.89210 3.04306 3.37200 3.48844 3.83743 3.96547 4.01399 4.04342 4.08708 4.10961 4.13054 4.32041 4.35978 4.48029 4.53914 4.58900 4.61044 4.62921 4.67250 4.75973 4.78194 4.81354 4.91652 5.00723 5.10312 5.16291 5.33525 5.41844 5.54528 5.55447 5.63353 5.66687 5.67725 5.77595 6.00441 6.08631 6.47239 6.64128 6.71332 6.89275 7.16870 7.21260 7.35253 8.81962 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010382 B = 0.002265 C = 0.001983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2696.390573 B =12361.281722 C =14114.271552 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.968 3.032 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.539 4.539 8 H 0.049 0.951 9 C 0.265 3.735 10 N -0.564 5.564 11 C 0.507 3.493 12 O -0.573 6.573 13 C -0.105 4.105 14 C -0.119 4.119 15 C 0.521 3.479 16 O -0.575 6.575 17 N -0.716 5.716 18 C 0.148 3.852 19 C -0.158 4.158 20 C -0.143 4.143 21 C 0.101 3.899 22 O -0.597 6.597 23 C 0.127 3.873 24 C -0.137 4.137 25 C -0.106 4.106 26 C -0.122 4.122 27 C -0.104 4.104 28 C -0.141 4.141 29 H 0.268 0.732 30 H 0.009 0.991 31 H 0.021 0.979 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.106 0.894 36 H 0.417 0.583 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.401 0.599 44 H 0.111 0.889 45 H 0.150 0.850 46 H 0.159 0.841 47 H 0.154 0.846 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.038 -22.289 -6.449 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.578 4.578 8 H 0.068 0.932 9 C 0.145 3.855 10 N -0.291 5.291 11 C 0.297 3.703 12 O -0.453 6.453 13 C -0.146 4.146 14 C -0.159 4.159 15 C 0.309 3.691 16 O -0.454 6.454 17 N -0.369 5.369 18 C 0.025 3.975 19 C -0.176 4.176 20 C -0.162 4.162 21 C 0.024 3.976 22 O -0.406 6.406 23 C 0.036 3.964 24 C -0.156 4.156 25 C -0.124 4.124 26 C -0.139 4.139 27 C -0.122 4.122 28 C -0.160 4.160 29 H 0.077 0.923 30 H 0.027 0.973 31 H 0.039 0.961 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.253 0.747 37 H 0.079 0.921 38 H 0.093 0.907 39 H 0.156 0.844 40 H 0.126 0.874 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.251 0.749 44 H 0.129 0.871 45 H 0.168 0.832 46 H 0.176 0.824 47 H 0.171 0.829 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.966 -21.945 -5.714 26.122 hybrid contribution -0.231 1.167 -1.052 1.588 sum 12.735 -20.778 -6.767 25.292 Atomic orbital electron populations 1.70043 1.07421 1.28163 1.50941 1.25826 0.95862 1.02932 0.94389 0.85368 0.78680 0.78659 0.78124 1.19365 1.20249 1.19478 1.21614 0.93084 0.91776 1.51278 0.93223 1.18862 0.87495 0.83155 0.95962 1.45814 1.45044 1.33748 1.04502 1.21210 0.80918 0.85478 0.82701 1.90635 1.59277 1.63336 1.32007 1.21274 0.99857 0.94684 0.98740 1.21330 1.01223 0.96152 0.97207 1.20656 0.80464 0.84470 0.83548 1.90692 1.56423 1.65562 1.32769 1.45878 1.50860 1.31183 1.08979 1.20326 0.94222 0.87530 0.95393 1.22786 0.98019 1.00848 0.95932 1.22870 0.97431 0.99021 0.96866 1.21241 0.91709 0.94007 0.90615 1.86466 1.60457 1.60314 1.33339 1.17970 0.93837 0.96907 0.87656 1.21373 0.94699 1.00975 0.98572 1.21334 1.01268 0.97000 0.92789 1.21545 0.92997 0.98844 1.00560 1.21340 0.96938 0.98874 0.95080 1.21393 0.99554 0.98846 0.96251 0.92294 0.97331 0.96113 0.88256 0.88312 0.87168 0.87594 0.74667 0.92089 0.90685 0.84354 0.87445 0.90914 0.91291 0.74888 0.87054 0.83207 0.82359 0.82873 0.86544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.66 13.28 21.45 0.28 -56.37 16 2 C 0.01 0.53 5.46 84.66 0.46 0.99 16 3 Si 0.97 46.00 29.54 68.60 2.03 48.03 16 4 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 7 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.27 14.87 5.07 85.63 0.43 15.30 16 10 N -0.56 -26.08 2.51 -635.28 -1.59 -27.67 16 11 C 0.51 22.12 7.53 87.66 0.66 22.78 16 12 O -0.57 -29.00 15.61 -3.04 -0.05 -29.05 16 13 C -0.11 -3.48 3.65 29.85 0.11 -3.37 16 14 C -0.12 -3.19 5.01 29.85 0.15 -3.04 16 15 C 0.52 13.19 7.83 87.66 0.69 13.88 16 16 O -0.57 -18.53 15.98 -3.03 -0.05 -18.58 16 17 N -0.72 -12.94 5.55 -466.80 -2.59 -15.53 16 18 C 0.15 2.41 6.11 85.63 0.52 2.94 16 19 C -0.16 -1.78 9.22 25.65 0.24 -1.54 16 20 C -0.14 -1.77 9.50 25.65 0.24 -1.52 16 21 C 0.10 0.91 7.46 71.24 0.53 1.44 16 22 O -0.60 -7.35 13.64 -148.98 -2.03 -9.38 16 23 C 0.13 4.93 4.42 38.15 0.17 5.10 16 24 C -0.14 -4.69 8.46 22.39 0.19 -4.50 16 25 C -0.11 -2.79 10.04 22.25 0.22 -2.56 16 26 C -0.12 -2.80 10.04 22.29 0.22 -2.58 16 27 C -0.10 -2.67 10.04 22.25 0.22 -2.45 16 28 C -0.14 -4.75 9.64 22.39 0.22 -4.54 16 29 H 0.27 15.28 8.31 -92.70 -0.77 14.51 16 30 H 0.01 0.54 7.49 -2.39 -0.02 0.52 16 31 H 0.02 1.20 7.83 -2.39 -0.02 1.18 16 32 H 0.10 3.25 6.95 -2.39 -0.02 3.24 16 33 H 0.10 3.16 7.97 -2.39 -0.02 3.14 16 34 H 0.11 2.74 8.14 -2.38 -0.02 2.72 16 35 H 0.11 2.81 8.04 -2.39 -0.02 2.79 16 36 H 0.42 5.40 8.46 -92.71 -0.78 4.62 16 37 H 0.06 1.15 7.79 -2.39 -0.02 1.13 16 38 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 39 H 0.14 1.02 7.90 -2.91 -0.02 1.00 16 40 H 0.11 1.56 7.84 -2.91 -0.02 1.54 16 41 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.07 0.40 7.86 -2.39 -0.02 0.38 16 43 H 0.40 1.06 9.12 -74.06 -0.68 0.38 16 44 H 0.11 3.94 7.90 -2.91 -0.02 3.91 16 45 H 0.15 3.03 8.06 -2.91 -0.02 3.00 16 46 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 48 H 0.12 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -82.71 414.25 1.04 -81.68 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: -0.48 Total: 22.46 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: 5.52 Total: 4.43 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -3.90 Total: -99.58 kcal Atomic # 8 Polarization: -54.89 SS G_CDS: -2.13 Total: -57.01 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -82.71 1.04 -81.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597994305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.329 kcal (2) G-P(sol) polarization free energy of solvation -82.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds