Wall clock time and date at job start Sat Apr 11 2020 07:48:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00112 * 2 1 4 4 H 1.48498 * 109.47227 * 270.00560 * 3 2 1 5 5 H 1.48497 * 109.47085 * 30.00277 * 3 2 1 6 6 H 1.48495 * 109.47294 * 150.00651 * 3 2 1 7 7 C 1.37875 * 119.99754 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00572 * 359.97438 * 7 2 1 9 9 C 1.50705 * 119.99729 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.46827 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46808 * 179.97438 * 10 9 7 12 12 S 1.81405 * 109.46888 * 180.02562 * 11 10 9 13 13 O 1.42107 * 110.54334 * 68.37959 * 12 11 10 14 14 O 1.42101 * 110.54402 * 291.62612 * 12 11 10 15 15 N 1.65604 * 104.44821 * 179.97438 * 12 11 10 16 16 C 1.47085 * 120.87803 * 90.00013 * 15 12 11 17 17 C 1.53234 * 108.52206 * 231.20542 * 16 15 12 18 18 N 1.46895 * 109.33896 * 306.17582 * 17 16 15 19 19 C 1.46905 * 110.99834 * 187.25473 * 18 17 16 20 20 H 1.09000 * 110.43116 * 298.90649 * 19 18 17 21 21 C 1.54268 * 110.49065 * 61.45040 * 19 18 17 22 22 C 1.53869 * 106.60115 * 142.28923 * 21 19 18 23 23 C 1.54270 * 106.63967 * 359.97438 * 22 21 19 24 24 C 1.54895 * 110.48775 * 176.22740 * 19 18 17 25 25 H 1.09001 * 110.75082 * 321.68910 * 24 19 18 26 26 O 1.42891 * 110.75585 * 84.87697 * 24 19 18 27 27 C 1.46898 * 111.27333 * 63.10379 * 18 17 16 28 28 C 1.47071 * 120.88321 * 270.02648 * 15 12 11 29 29 H 0.97001 * 119.99783 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.47462 * 59.99871 * 9 7 2 31 31 H 1.08998 * 109.47070 * 299.99773 * 9 7 2 32 32 H 1.09002 * 109.47193 * 60.00628 * 10 9 7 33 33 H 1.08998 * 109.47464 * 299.99965 * 10 9 7 34 34 H 1.09001 * 109.47371 * 60.00373 * 11 10 9 35 35 H 1.08998 * 109.47180 * 300.00263 * 11 10 9 36 36 H 1.08998 * 109.62662 * 111.49628 * 16 15 12 37 37 H 1.09004 * 109.62728 * 350.91829 * 16 15 12 38 38 H 1.08998 * 109.49303 * 186.20960 * 17 16 15 39 39 H 1.09004 * 109.49458 * 66.13154 * 17 16 15 40 40 H 1.08999 * 110.03048 * 23.00205 * 21 19 18 41 41 H 1.08996 * 110.03060 * 261.57795 * 21 19 18 42 42 H 1.09002 * 110.03268 * 119.28653 * 22 21 19 43 43 H 1.08995 * 110.03391 * 240.66959 * 22 21 19 44 44 H 1.08997 * 110.48585 * 95.09409 * 23 22 21 45 45 H 1.09002 * 110.48442 * 217.73292 * 23 22 21 46 46 H 0.96706 * 114.00240 * 180.02562 * 26 24 19 47 47 H 1.08997 * 109.49070 * 56.85718 * 27 18 17 48 48 H 1.09002 * 109.49151 * 176.93582 * 27 18 17 49 49 H 1.09001 * 109.62596 * 248.50324 * 28 15 12 50 50 H 1.08997 * 109.63233 * 8.88344 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6366 -0.0022 12 16 6.1562 -4.3469 -0.0028 13 8 5.8591 -4.9804 -1.2397 14 8 5.8610 -4.9806 1.2343 15 7 7.8058 -4.2020 -0.0049 16 6 8.5594 -4.1358 1.2566 17 6 9.4873 -2.9175 1.2059 18 7 10.3123 -2.9844 -0.0077 19 6 11.3338 -1.9287 -0.0088 20 1 10.8644 -0.9451 0.0109 21 6 12.2855 -2.0969 1.1936 22 6 13.6930 -1.7246 0.6957 23 6 13.5487 -1.3436 -0.7922 24 6 12.2559 -2.0678 -1.2455 25 1 12.4572 -3.1172 -1.4611 26 8 11.6801 -1.4207 -2.3819 27 6 9.4843 -2.9171 -1.2193 28 6 8.5562 -4.1354 -1.2680 29 1 -0.4850 0.8401 0.0004 30 1 3.8753 -0.6804 0.8888 31 1 3.8745 -0.6801 -0.8911 32 1 3.6579 -3.1506 -0.8908 33 1 3.6585 -3.1503 0.8892 34 1 5.9156 -2.1225 0.8873 35 1 5.9141 -2.1231 -0.8927 36 1 9.1519 -5.0427 1.3770 37 1 7.8666 -4.0340 2.0920 38 1 10.1323 -2.9148 2.0846 39 1 8.8901 -2.0057 1.1899 40 1 12.2727 -3.1310 1.5381 41 1 11.9870 -1.4299 2.0023 42 1 14.0776 -0.8769 1.2627 43 1 14.3635 -2.5777 0.7992 44 1 13.4393 -0.2645 -0.9008 45 1 14.4067 -1.7002 -1.3623 46 1 12.2188 -1.4793 -3.1829 47 1 8.8872 -2.0054 -1.2015 48 1 10.1273 -2.9141 -2.0995 49 1 9.1485 -5.0423 -1.3902 50 1 7.8614 -4.0369 -2.1020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611540555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:48:40 Heat of formation + Delta-G solvation = -124.223279 kcal Electronic energy + Delta-G solvation = -29683.541012 eV Core-core repulsion = 25644.344274 eV Total energy + Delta-G solvation = -4039.196738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.12456 -38.03624 -37.01197 -35.82027 -35.66657 -34.80833 -33.99978 -32.21145 -31.42548 -28.66439 -28.37145 -28.01715 -25.29120 -24.03956 -23.59524 -21.15839 -20.93388 -20.42978 -20.17390 -18.88379 -17.99358 -17.63506 -16.91370 -16.37784 -16.23994 -15.99014 -15.60365 -15.22949 -14.95933 -14.88475 -14.32743 -14.23801 -14.18190 -14.08629 -13.73494 -13.00640 -12.91181 -12.86773 -12.67752 -12.36547 -12.24763 -12.15296 -11.94023 -11.91249 -11.81090 -11.72530 -11.59050 -11.51381 -11.42393 -11.07330 -10.97397 -10.95065 -10.83323 -10.81571 -10.29623 -10.09571 -9.88016 -9.73044 -9.29015 -9.12288 -8.59143 -8.58924 -6.08643 -4.07809 0.37156 2.66770 3.26261 3.33762 3.35931 3.39792 3.73833 3.96499 4.02062 4.22228 4.30502 4.40070 4.41775 4.51154 4.79325 4.83546 4.91585 4.95500 4.98629 5.03174 5.05667 5.09018 5.11236 5.14775 5.20295 5.25234 5.29508 5.40300 5.43820 5.53790 5.60974 5.61919 5.69333 5.70546 5.74901 5.80735 5.88375 5.92125 6.13061 6.26855 6.42252 6.66940 6.72685 6.76833 7.12485 7.22824 7.26394 7.70866 8.47569 8.95833 9.52550 11.04663 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.012079 B = 0.002800 C = 0.002473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.458456 B = 9998.060415 C =11317.640131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.068 3.932 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.075 0.925 9 C -0.004 4.004 10 C -0.097 4.097 11 C -0.616 4.616 12 S 2.600 3.400 13 O -0.957 6.957 14 O -0.957 6.957 15 N -1.006 6.006 16 C 0.128 3.872 17 C 0.036 3.964 18 N -0.528 5.528 19 C 0.086 3.914 20 H 0.056 0.944 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.156 4.156 24 C 0.103 3.897 25 H 0.075 0.925 26 O -0.562 6.562 27 C 0.039 3.961 28 C 0.127 3.873 29 H 0.264 0.736 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.041 0.959 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.378 0.622 47 H 0.040 0.960 48 H 0.099 0.901 49 H 0.076 0.924 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.130 -4.740 -0.511 32.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.134 4.134 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.093 0.907 9 C -0.043 4.043 10 C -0.136 4.136 11 C -0.747 4.747 12 S 2.697 3.303 13 O -0.947 6.947 14 O -0.947 6.947 15 N -0.843 5.843 16 C 0.003 3.997 17 C -0.093 4.093 18 N -0.253 5.253 19 C -0.022 4.022 20 H 0.074 0.926 21 C -0.156 4.156 22 C -0.157 4.157 23 C -0.194 4.194 24 C 0.044 3.956 25 H 0.093 0.907 26 O -0.368 6.368 27 C -0.090 4.090 28 C 0.001 3.999 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.100 0.900 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.087 0.913 46 H 0.226 0.774 47 H 0.058 0.942 48 H 0.117 0.883 49 H 0.095 0.905 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 31.264 -5.801 -0.067 31.798 hybrid contribution 0.598 2.451 -0.381 2.552 sum 31.862 -3.350 -0.449 32.041 Atomic orbital electron populations 1.69913 1.06261 1.26967 1.50727 1.25023 0.94760 0.99149 0.94472 0.86777 0.80296 0.83648 0.78542 1.20212 1.21241 1.19130 1.21136 0.89236 0.94778 1.51298 0.90704 1.19526 0.97331 0.90741 0.96661 1.21309 0.86671 1.02907 1.02743 1.30670 1.09378 1.23775 1.10919 1.05410 0.72456 0.78178 0.74269 1.93569 1.82734 1.73138 1.45250 1.93567 1.82779 1.73142 1.45253 1.57979 1.24437 1.90049 1.11858 1.21464 0.94642 0.98462 0.85166 1.22554 0.95574 0.97787 0.93408 1.62008 1.14703 1.46198 1.02384 1.22437 0.92130 0.93653 0.94006 0.92619 1.22165 0.93869 1.02850 0.96729 1.21982 0.96956 1.01464 0.95346 1.23007 0.98059 1.01488 0.96869 1.22842 0.91515 0.95652 0.85570 0.90714 1.86538 1.50033 1.79245 1.20996 1.22598 0.95616 0.97165 0.93659 1.21508 0.94737 0.98661 0.84958 0.92624 0.96256 0.96661 0.91024 0.91002 0.85675 0.85625 0.90345 0.88782 0.89405 0.94089 0.90046 0.91408 0.91525 0.91387 0.90718 0.91260 0.77409 0.94171 0.88260 0.90539 0.88831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.89 13.96 55.43 0.77 -27.12 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.67 27.47 -169.99 -4.67 17.00 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 7 C -0.53 -15.15 9.66 -34.44 -0.33 -15.48 16 8 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 9 C 0.00 -0.09 4.04 -27.88 -0.11 -0.21 16 10 C -0.10 -1.93 5.16 -26.73 -0.14 -2.07 16 11 C -0.62 -9.27 6.18 37.16 0.23 -9.04 16 12 S 2.60 38.68 5.42 -107.50 -0.58 38.10 16 13 O -0.96 -16.78 16.79 -57.54 -0.97 -17.75 16 14 O -0.96 -16.67 16.79 -57.54 -0.97 -17.63 16 15 N -1.01 -11.63 3.26 -113.24 -0.37 -12.00 16 16 C 0.13 1.25 6.47 -3.60 -0.02 1.23 16 17 C 0.04 0.31 5.45 -3.71 -0.02 0.29 16 18 N -0.53 -4.57 4.45 -224.36 -1.00 -5.56 16 19 C 0.09 0.67 2.35 -66.05 -0.15 0.52 16 20 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 21 C -0.12 -0.72 5.18 -25.62 -0.13 -0.85 16 22 C -0.12 -0.61 6.80 -25.61 -0.17 -0.78 16 23 C -0.16 -0.82 6.57 -25.03 -0.16 -0.98 16 24 C 0.10 0.68 3.11 -24.70 -0.08 0.60 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 O -0.56 -3.97 11.61 -35.23 -0.41 -4.38 16 27 C 0.04 0.36 5.21 -3.70 -0.02 0.35 16 28 C 0.13 1.30 6.47 -3.61 -0.02 1.27 16 29 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 30 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 31 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 32 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.12 1.65 8.14 -51.92 -0.42 1.23 16 35 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.90 7.19 -51.93 -0.37 0.53 16 38 H 0.09 0.60 6.81 -51.93 -0.35 0.24 16 39 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.50 7.80 -51.93 -0.40 0.10 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.38 1.17 9.12 45.56 0.42 1.59 16 47 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.10 0.87 5.74 -51.93 -0.30 0.57 16 49 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 50 H 0.09 0.96 7.19 -51.93 -0.37 0.59 16 LS Contribution 395.64 15.07 5.96 5.96 Total: -1.00 -36.18 395.64 -11.55 -47.73 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -8.08 Total: -1.08 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.24 Total: -23.28 kcal Atomic # 7 Polarization: -44.09 SS G_CDS: -0.59 Total: -44.68 kcal Atomic # 8 Polarization: -37.41 SS G_CDS: -2.34 Total: -39.76 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.67 Total: 17.00 kcal Atomic # 16 Polarization: 38.68 SS G_CDS: -0.58 Total: 38.10 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.18 -11.55 -47.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611540555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.492 kcal (2) G-P(sol) polarization free energy of solvation -36.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds