Wall clock time and date at job start Sat Apr 11 2020 07:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99907 * 2 1 4 4 H 1.48502 * 109.47032 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.47268 * 29.99499 * 3 2 1 6 6 H 1.48498 * 109.47081 * 149.99784 * 3 2 1 7 7 C 1.37873 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00068 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00297 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00122 * 89.99946 * 10 9 7 12 12 O 1.21288 * 120.00260 * 4.96017 * 11 10 9 13 13 C 1.50702 * 120.00167 * 184.95894 * 11 10 9 14 14 N 1.46902 * 109.47011 * 186.11353 * 13 11 10 15 15 C 1.46850 * 110.99988 * 66.04678 * 14 13 11 16 16 C 1.53037 * 109.51963 * 185.83517 * 15 14 13 17 17 C 1.53118 * 109.28106 * 300.81699 * 16 15 14 18 18 C 1.53122 * 109.15584 * 57.65741 * 17 16 15 19 19 H 1.09007 * 109.50362 * 62.32547 * 18 17 16 20 20 C 1.50700 * 109.50231 * 182.40186 * 18 17 16 21 21 O 1.20823 * 120.00094 * 119.92083 * 20 18 17 22 22 O 1.34236 * 119.99729 * 300.19848 * 20 18 17 23 23 C 1.46852 * 110.99425 * 190.29715 * 14 13 11 24 24 C 1.39929 * 119.99909 * 269.99795 * 10 9 7 25 25 C 1.38872 * 120.06613 * 110.32909 * 24 10 9 26 26 C 1.38116 * 119.92573 * 179.67791 * 25 24 10 27 27 C 1.38282 * 120.07121 * 0.61827 * 26 25 24 28 28 C 1.38287 * 120.13901 * 359.68126 * 27 26 25 29 29 C 1.38112 * 120.07104 * 359.97438 * 28 27 26 30 30 H 0.97002 * 120.00219 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47454 * 60.00195 * 9 7 2 32 32 H 1.09001 * 109.47538 * 300.00036 * 9 7 2 33 33 H 1.08998 * 109.46684 * 66.11362 * 13 11 10 34 34 H 1.08997 * 109.46763 * 306.11336 * 13 11 10 35 35 H 1.08998 * 109.46119 * 65.82281 * 15 14 13 36 36 H 1.09000 * 109.46324 * 305.85444 * 15 14 13 37 37 H 1.09000 * 109.49896 * 180.87769 * 16 15 14 38 38 H 1.08997 * 109.53629 * 60.78324 * 16 15 14 39 39 H 1.09000 * 109.52864 * 297.75330 * 17 16 15 40 40 H 1.09000 * 109.57370 * 177.58932 * 17 16 15 41 41 H 0.96704 * 116.99427 * 179.72600 * 22 20 18 42 42 H 1.09002 * 109.49448 * 54.16058 * 23 14 13 43 43 H 1.09008 * 109.42607 * 294.19468 * 23 14 13 44 44 H 1.07998 * 120.03666 * 359.97438 * 25 24 10 45 45 H 1.08003 * 119.96616 * 180.34548 * 26 25 24 46 46 H 1.07994 * 119.93099 * 179.69818 * 27 26 25 47 47 H 1.07999 * 119.96663 * 180.02562 * 28 27 26 48 48 H 1.08001 * 120.03828 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6400 -4.1244 1.1695 12 8 2.1784 -3.7246 2.2174 13 6 3.7023 -5.1933 1.1732 14 7 3.8980 -5.6843 2.5439 15 6 2.6999 -6.3807 3.0296 16 6 2.8848 -6.7491 4.5034 17 6 4.1151 -7.6489 4.6491 18 6 5.3403 -6.9189 4.0917 19 1 5.5206 -6.0144 4.6728 20 6 6.5450 -7.8202 4.1773 21 8 7.1398 -8.1307 3.1724 22 8 6.9540 -8.2826 5.3693 23 6 5.0850 -6.5447 2.6300 24 6 2.6585 -4.1450 -1.2095 25 6 3.9765 -3.9521 -1.6024 26 6 4.4248 -4.4846 -2.7953 27 6 3.5595 -5.1981 -3.6042 28 6 2.2449 -5.3866 -3.2188 29 6 1.7923 -4.8628 -2.0237 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 4.6377 -4.7772 0.7992 34 1 3.3898 -6.0182 0.5329 35 1 2.5451 -7.2876 2.4452 36 1 1.8329 -5.7285 2.9242 37 1 2.0017 -7.2798 4.8593 38 1 3.0257 -5.8420 5.0910 39 1 3.9582 -8.5735 4.0937 40 1 4.2763 -7.8794 5.7022 41 1 7.7291 -8.8608 5.3734 42 1 5.9500 -6.0119 2.2350 43 1 4.9191 -7.4506 2.0469 44 1 4.6514 -3.3905 -0.9735 45 1 5.4511 -4.3397 -3.0988 46 1 3.9112 -5.6092 -4.5389 47 1 1.5717 -5.9447 -3.8525 48 1 0.7656 -5.0107 -1.7229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739071973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:22 Heat of formation + Delta-G solvation = -89.975617 kcal Electronic energy + Delta-G solvation = -30938.686776 eV Core-core repulsion = 26765.531177 eV Total energy + Delta-G solvation = -4173.155599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.82892 -40.01033 -38.74538 -37.72715 -36.37389 -34.85444 -33.70237 -32.66137 -31.27508 -30.72088 -29.41868 -28.35201 -26.46413 -24.97323 -23.65680 -22.69505 -22.29491 -22.05771 -21.48496 -19.85411 -19.00046 -18.29503 -17.19144 -16.87818 -16.52158 -16.13841 -16.05812 -15.63149 -15.24004 -15.12756 -14.76116 -14.53097 -14.25402 -14.00165 -13.90180 -13.62710 -13.41284 -13.19081 -13.13052 -12.81105 -12.55687 -12.40113 -12.24596 -11.83996 -11.75456 -11.57133 -11.47508 -11.21637 -11.07174 -10.94970 -10.91983 -10.84431 -10.65295 -10.58748 -10.45473 -10.17539 -9.71846 -9.27104 -8.70818 -8.62843 -8.44748 -8.17168 -7.69803 -6.06603 -4.11063 1.55151 1.62798 1.94209 2.67423 3.27585 3.30426 3.36711 3.41434 3.58924 4.00113 4.12332 4.37090 4.44013 4.55108 4.73389 4.90158 5.09579 5.15654 5.16072 5.18945 5.19396 5.28803 5.34175 5.37892 5.41518 5.50004 5.54673 5.63139 5.67243 5.71013 5.80531 5.80916 5.86000 6.02957 6.14837 6.20748 6.24525 6.26759 6.58301 6.71375 6.79989 6.86376 7.04335 7.07744 7.18827 7.35991 7.48074 7.62150 7.89269 8.17919 8.34880 8.84926 9.00048 9.53646 11.01737 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.003261 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.031643 B = 8583.850776 C = 9960.019132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.898 3.102 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.526 4.526 8 H 0.058 0.942 9 C 0.250 3.750 10 N -0.565 5.565 11 C 0.516 3.484 12 O -0.509 6.509 13 C 0.041 3.959 14 N -0.518 5.518 15 C 0.048 3.952 16 C -0.112 4.112 17 C -0.110 4.110 18 C -0.077 4.077 19 H 0.121 0.879 20 C 0.486 3.514 21 O -0.516 6.516 22 O -0.515 6.515 23 C 0.073 3.927 24 C 0.163 3.837 25 C -0.124 4.124 26 C -0.110 4.110 27 C -0.134 4.134 28 C -0.110 4.110 29 C -0.125 4.125 30 H 0.264 0.736 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.028 0.972 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.078 0.922 41 H 0.408 0.592 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.124 0.876 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.716 -18.233 2.754 20.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.564 4.564 8 H 0.076 0.924 9 C 0.132 3.868 10 N -0.294 5.294 11 C 0.303 3.697 12 O -0.383 6.383 13 C -0.090 4.090 14 N -0.243 5.243 15 C -0.080 4.080 16 C -0.150 4.150 17 C -0.148 4.148 18 C -0.096 4.096 19 H 0.139 0.861 20 C 0.328 3.672 21 O -0.404 6.404 22 O -0.326 6.326 23 C -0.055 4.055 24 C 0.071 3.929 25 C -0.144 4.144 26 C -0.129 4.129 27 C -0.153 4.153 28 C -0.129 4.129 29 C -0.145 4.145 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.046 0.954 36 H 0.115 0.885 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.267 0.733 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.142 0.858 45 H 0.139 0.861 46 H 0.136 0.864 47 H 0.139 0.861 48 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.151 -17.277 3.401 19.845 hybrid contribution 0.951 0.046 -0.772 1.225 sum 10.101 -17.231 2.629 20.146 Atomic orbital electron populations 1.69928 1.05983 1.27084 1.50317 1.24904 0.94882 0.99190 0.94970 0.86486 0.79889 0.83000 0.78025 1.20635 1.21045 1.19813 1.21369 0.93372 0.90455 1.51253 0.92388 1.19408 0.87177 0.81495 0.98721 1.45981 1.46159 1.34908 1.02357 1.20136 0.82932 0.82932 0.83684 1.90665 1.56785 1.60513 1.30352 1.22030 1.00074 0.97353 0.89564 1.61447 1.03330 1.38171 1.21313 1.22289 0.93905 0.96705 0.95059 1.21551 0.96792 0.99944 0.96702 1.21595 0.93319 0.98270 1.01618 1.21038 0.90564 0.98182 0.99829 0.86086 1.23516 0.84890 0.78407 0.80359 1.90726 1.56242 1.56395 1.37038 1.84550 1.49835 1.63273 1.34981 1.21857 0.94175 0.96161 0.93299 1.17746 0.92552 0.94359 0.88259 1.21412 0.95994 0.99808 0.97175 1.20988 0.99593 0.97994 0.94298 1.21064 0.93930 1.00513 0.99746 1.20967 0.95832 1.00038 0.96059 1.21320 1.00073 0.97855 0.95244 0.92673 0.94837 0.93321 0.87990 0.92438 0.95390 0.88493 0.90849 0.90153 0.91819 0.90334 0.73302 0.89715 0.93889 0.85828 0.86123 0.86406 0.86138 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.53 -14.83 9.39 -34.44 -0.32 -15.15 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.25 6.47 5.15 -5.19 -0.03 6.44 16 10 N -0.56 -11.96 2.50 -114.74 -0.29 -12.24 16 11 C 0.52 10.53 7.12 -10.99 -0.08 10.45 16 12 O -0.51 -12.18 14.23 5.55 0.08 -12.10 16 13 C 0.04 0.64 4.00 -4.97 -0.02 0.62 16 14 N -0.52 -7.52 4.35 -236.11 -1.03 -8.55 16 15 C 0.05 0.65 5.12 -3.83 -0.02 0.63 16 16 C -0.11 -1.21 6.09 -26.65 -0.16 -1.38 16 17 C -0.11 -1.01 5.21 -26.61 -0.14 -1.15 16 18 C -0.08 -0.79 2.79 -91.69 -0.26 -1.04 16 19 H 0.12 1.23 8.14 -51.93 -0.42 0.80 16 20 C 0.49 4.95 7.63 36.01 0.27 5.23 16 21 O -0.52 -6.74 16.74 -18.75 -0.31 -7.05 16 22 O -0.51 -3.85 13.35 -39.27 -0.52 -4.38 16 23 C 0.07 0.89 4.04 -3.84 -0.02 0.87 16 24 C 0.16 2.91 4.32 -83.69 -0.36 2.55 16 25 C -0.12 -1.97 8.56 -39.39 -0.34 -2.31 16 26 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 27 C -0.13 -1.64 10.04 -39.55 -0.40 -2.04 16 28 C -0.11 -1.44 10.04 -39.61 -0.40 -1.84 16 29 C -0.13 -1.98 9.75 -39.39 -0.38 -2.37 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.03 0.89 7.91 -51.93 -0.41 0.48 16 32 H 0.05 1.40 7.36 -51.93 -0.38 1.02 16 33 H 0.10 1.49 6.99 -51.93 -0.36 1.13 16 34 H 0.06 0.83 7.82 -51.93 -0.41 0.42 16 35 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.10 1.60 6.02 -51.93 -0.31 1.29 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.41 1.34 9.10 45.56 0.41 1.76 16 42 H 0.08 1.04 7.99 -51.93 -0.41 0.62 16 43 H 0.04 0.52 8.08 -51.92 -0.42 0.10 16 44 H 0.12 1.97 7.75 -52.49 -0.41 1.56 16 45 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 46 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 48 H 0.12 1.92 8.06 -52.49 -0.42 1.49 16 LS Contribution 396.28 15.07 5.97 5.97 Total: -1.00 -34.40 396.28 -10.00 -44.40 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.47 Total: 3.40 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -3.14 Total: -0.64 kcal Atomic # 7 Polarization: -45.91 SS G_CDS: -0.58 Total: -46.49 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.76 Total: -23.53 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.40 -10.00 -44.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739071973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.576 kcal (2) G-P(sol) polarization free energy of solvation -34.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds