Wall clock time and date at job start Sat Apr 11 2020 07:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99907 * 2 1 4 4 H 1.48502 * 109.47032 * 269.99677 * 3 2 1 5 5 H 1.48500 * 109.47268 * 29.99499 * 3 2 1 6 6 H 1.48498 * 109.47081 * 149.99784 * 3 2 1 7 7 C 1.37873 * 119.99743 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00068 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00297 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00122 * 89.99946 * 10 9 7 12 12 O 1.21288 * 120.00260 * 4.96017 * 11 10 9 13 13 C 1.50702 * 120.00167 * 184.95894 * 11 10 9 14 14 N 1.46902 * 109.47011 * 186.11353 * 13 11 10 15 15 C 1.46850 * 110.99988 * 66.04678 * 14 13 11 16 16 C 1.53037 * 109.51963 * 185.83517 * 15 14 13 17 17 C 1.53118 * 109.28106 * 300.81699 * 16 15 14 18 18 C 1.53122 * 109.15584 * 57.65741 * 17 16 15 19 19 H 1.09007 * 109.50362 * 62.32547 * 18 17 16 20 20 C 1.50700 * 109.50231 * 182.40186 * 18 17 16 21 21 O 1.20823 * 120.00094 * 119.92083 * 20 18 17 22 22 O 1.34236 * 119.99729 * 300.19848 * 20 18 17 23 23 C 1.46852 * 110.99425 * 190.29715 * 14 13 11 24 24 C 1.39929 * 119.99909 * 269.99795 * 10 9 7 25 25 C 1.38872 * 120.06613 * 110.32909 * 24 10 9 26 26 C 1.38116 * 119.92573 * 179.67791 * 25 24 10 27 27 C 1.38282 * 120.07121 * 0.61827 * 26 25 24 28 28 C 1.38287 * 120.13901 * 359.68126 * 27 26 25 29 29 C 1.38112 * 120.07104 * 359.97438 * 28 27 26 30 30 H 0.97002 * 120.00219 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47454 * 60.00195 * 9 7 2 32 32 H 1.09001 * 109.47538 * 300.00036 * 9 7 2 33 33 H 1.08998 * 109.46684 * 66.11362 * 13 11 10 34 34 H 1.08997 * 109.46763 * 306.11336 * 13 11 10 35 35 H 1.08998 * 109.46119 * 65.82281 * 15 14 13 36 36 H 1.09000 * 109.46324 * 305.85444 * 15 14 13 37 37 H 1.09000 * 109.49896 * 180.87769 * 16 15 14 38 38 H 1.08997 * 109.53629 * 60.78324 * 16 15 14 39 39 H 1.09000 * 109.52864 * 297.75330 * 17 16 15 40 40 H 1.09000 * 109.57370 * 177.58932 * 17 16 15 41 41 H 0.96704 * 116.99427 * 179.72600 * 22 20 18 42 42 H 1.09002 * 109.49448 * 54.16058 * 23 14 13 43 43 H 1.09008 * 109.42607 * 294.19468 * 23 14 13 44 44 H 1.07998 * 120.03666 * 359.97438 * 25 24 10 45 45 H 1.08003 * 119.96616 * 180.34548 * 26 25 24 46 46 H 1.07994 * 119.93099 * 179.69818 * 27 26 25 47 47 H 1.07999 * 119.96663 * 180.02562 * 28 27 26 48 48 H 1.08001 * 120.03828 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0018 11 6 2.6400 -4.1244 1.1695 12 8 2.1784 -3.7246 2.2174 13 6 3.7023 -5.1933 1.1732 14 7 3.8980 -5.6843 2.5439 15 6 2.6999 -6.3807 3.0296 16 6 2.8848 -6.7491 4.5034 17 6 4.1151 -7.6489 4.6491 18 6 5.3403 -6.9189 4.0917 19 1 5.5206 -6.0144 4.6728 20 6 6.5450 -7.8202 4.1773 21 8 7.1398 -8.1307 3.1724 22 8 6.9540 -8.2826 5.3693 23 6 5.0850 -6.5447 2.6300 24 6 2.6585 -4.1450 -1.2095 25 6 3.9765 -3.9521 -1.6024 26 6 4.4248 -4.4846 -2.7953 27 6 3.5595 -5.1981 -3.6042 28 6 2.2449 -5.3866 -3.2188 29 6 1.7923 -4.8628 -2.0237 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6240 -2.5567 0.8903 33 1 4.6377 -4.7772 0.7992 34 1 3.3898 -6.0182 0.5329 35 1 2.5451 -7.2876 2.4452 36 1 1.8329 -5.7285 2.9242 37 1 2.0017 -7.2798 4.8593 38 1 3.0257 -5.8420 5.0910 39 1 3.9582 -8.5735 4.0937 40 1 4.2763 -7.8794 5.7022 41 1 7.7291 -8.8608 5.3734 42 1 5.9500 -6.0119 2.2350 43 1 4.9191 -7.4506 2.0469 44 1 4.6514 -3.3905 -0.9735 45 1 5.4511 -4.3397 -3.0988 46 1 3.9112 -5.6092 -4.5389 47 1 1.5717 -5.9447 -3.8525 48 1 0.7656 -5.0107 -1.7229 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739071973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:21 Heat of formation + Delta-G solvation = -112.648317 kcal Electronic energy + Delta-G solvation = -30939.669938 eV Core-core repulsion = 26765.531177 eV Total energy + Delta-G solvation = -4174.138761 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.76421 -41.32854 -39.84125 -38.98938 -37.11310 -36.48079 -34.91881 -34.60277 -32.21293 -31.85371 -30.94018 -29.80027 -28.12271 -25.86930 -25.18529 -24.13913 -23.43881 -23.31859 -22.43815 -20.75189 -20.42391 -19.05544 -18.74256 -18.40198 -17.95120 -17.35520 -17.09465 -16.90114 -16.70374 -16.30349 -16.05818 -15.86503 -15.67392 -15.08963 -14.89267 -14.85251 -14.52384 -14.36213 -14.26930 -14.15098 -13.99023 -13.58673 -13.54020 -13.37037 -13.09463 -12.88936 -12.65688 -12.58175 -12.52222 -12.42711 -12.17052 -12.10910 -11.96006 -11.79381 -11.72516 -11.52296 -11.34981 -10.83070 -10.66816 -10.05130 -9.82905 -9.38123 -9.24068 -8.24986 -6.39703 0.37173 0.50446 1.16425 1.34774 1.37658 1.47900 1.69879 1.84863 2.21034 2.38599 2.85785 2.97129 3.04964 3.50711 3.56169 3.73795 3.90704 4.05079 4.12309 4.13746 4.18379 4.22943 4.30333 4.34358 4.41506 4.53465 4.60256 4.62959 4.66452 4.67617 4.77035 4.81795 4.89721 5.00369 5.02450 5.11873 5.16244 5.17681 5.35490 5.43355 5.54379 5.59033 5.62690 5.67402 5.76578 5.83005 6.00818 6.02445 6.08267 6.66410 6.74891 6.98760 7.23998 7.39533 8.82378 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010008 B = 0.003261 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2797.031643 B = 8583.850776 C = 9960.019132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.541 4.541 8 H 0.052 0.948 9 C 0.269 3.731 10 N -0.567 5.567 11 C 0.509 3.491 12 O -0.557 6.557 13 C 0.059 3.941 14 N -0.534 5.534 15 C 0.048 3.952 16 C -0.107 4.107 17 C -0.101 4.101 18 C -0.077 4.077 19 H 0.122 0.878 20 C 0.498 3.502 21 O -0.548 6.548 22 O -0.506 6.506 23 C 0.077 3.923 24 C 0.125 3.875 25 C -0.135 4.135 26 C -0.103 4.103 27 C -0.120 4.120 28 C -0.104 4.104 29 C -0.141 4.141 30 H 0.268 0.732 31 H 0.017 0.983 32 H 0.006 0.994 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.040 0.960 36 H 0.058 0.942 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.098 0.902 41 H 0.429 0.571 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.115 0.885 45 H 0.153 0.847 46 H 0.159 0.841 47 H 0.152 0.848 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.250 -19.804 1.505 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.580 4.580 8 H 0.070 0.930 9 C 0.149 3.851 10 N -0.295 5.295 11 C 0.298 3.702 12 O -0.435 6.435 13 C -0.071 4.071 14 N -0.259 5.259 15 C -0.079 4.079 16 C -0.145 4.145 17 C -0.138 4.138 18 C -0.096 4.096 19 H 0.140 0.860 20 C 0.342 3.658 21 O -0.438 6.438 22 O -0.320 6.320 23 C -0.051 4.051 24 C 0.034 3.966 25 C -0.155 4.155 26 C -0.122 4.122 27 C -0.138 4.138 28 C -0.123 4.123 29 C -0.161 4.161 30 H 0.077 0.923 31 H 0.035 0.965 32 H 0.024 0.976 33 H 0.131 0.869 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.291 0.709 42 H 0.100 0.900 43 H 0.064 0.936 44 H 0.133 0.867 45 H 0.171 0.829 46 H 0.176 0.824 47 H 0.169 0.831 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.719 -18.897 2.142 22.339 hybrid contribution 0.152 0.456 -0.428 0.644 sum 11.871 -18.441 1.714 21.999 Atomic orbital electron populations 1.70048 1.07525 1.28229 1.50861 1.25831 0.95811 1.02962 0.94309 0.85413 0.78386 0.78297 0.78737 1.19011 1.20352 1.19610 1.21615 0.93194 0.91718 1.51461 0.92952 1.18784 0.87549 0.83057 0.95723 1.45797 1.45396 1.33943 1.04408 1.21032 0.83181 0.83312 0.82694 1.90626 1.58585 1.62316 1.31969 1.21832 0.98390 0.96042 0.90866 1.61420 1.04524 1.39471 1.20502 1.22246 0.92351 0.96054 0.97297 1.21514 0.98647 0.99998 0.94309 1.21545 0.91603 0.97737 1.02920 1.20990 0.91487 0.98653 0.98507 0.85984 1.23267 0.84300 0.77796 0.80482 1.90723 1.57228 1.57668 1.38208 1.84495 1.50831 1.63362 1.33271 1.21836 0.92718 0.95610 0.94887 1.18004 0.94108 0.96721 0.87725 1.21436 0.94933 1.00600 0.98533 1.21359 1.01307 0.96738 0.92775 1.21556 0.93031 0.98631 1.00575 1.21329 0.97015 0.99099 0.94825 1.21396 0.99501 0.98736 0.96482 0.92322 0.96462 0.97604 0.86883 0.91015 0.94201 0.92303 0.89144 0.91575 0.90998 0.88313 0.70916 0.89952 0.93636 0.86669 0.82932 0.82355 0.83069 0.86972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 2 C 0.01 0.59 5.46 84.65 0.46 1.05 16 3 Si 0.97 45.70 29.54 68.60 2.03 47.73 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.54 -32.01 9.39 25.60 0.24 -31.77 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.27 15.03 5.15 85.63 0.44 15.47 16 10 N -0.57 -25.71 2.50 -635.31 -1.59 -27.30 16 11 C 0.51 22.25 7.12 87.66 0.62 22.87 16 12 O -0.56 -28.99 14.23 -3.05 -0.04 -29.04 16 13 C 0.06 1.92 4.00 85.56 0.34 2.26 16 14 N -0.53 -15.86 4.35 -900.91 -3.92 -19.78 16 15 C 0.05 1.35 5.12 86.32 0.44 1.79 16 16 C -0.11 -2.28 6.09 30.65 0.19 -2.09 16 17 C -0.10 -1.65 5.21 30.67 0.16 -1.49 16 18 C -0.08 -1.47 2.79 -11.49 -0.03 -1.51 16 19 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 20 C 0.50 9.14 7.63 71.24 0.54 9.69 16 21 O -0.55 -13.41 16.74 21.97 0.37 -13.04 16 22 O -0.51 -6.15 13.35 -51.48 -0.69 -6.84 16 23 C 0.08 1.81 4.04 86.32 0.35 2.16 16 24 C 0.12 4.60 4.32 38.15 0.16 4.77 16 25 C -0.14 -4.24 8.56 22.39 0.19 -4.05 16 26 C -0.10 -2.40 10.04 22.25 0.22 -2.18 16 27 C -0.12 -2.45 10.04 22.29 0.22 -2.23 16 28 C -0.10 -2.46 10.04 22.25 0.22 -2.24 16 29 C -0.14 -4.53 9.75 22.39 0.22 -4.32 16 30 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 31 H 0.02 1.00 7.91 -2.39 -0.02 0.98 16 32 H 0.01 0.37 7.36 -2.39 -0.02 0.35 16 33 H 0.11 3.36 6.99 -2.39 -0.02 3.35 16 34 H 0.07 2.10 7.82 -2.39 -0.02 2.08 16 35 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.06 2.11 6.02 -2.39 -0.01 2.10 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.43 1.55 9.10 -74.05 -0.67 0.88 16 42 H 0.08 1.96 7.99 -2.39 -0.02 1.94 16 43 H 0.05 1.05 8.08 -2.38 -0.02 1.03 16 44 H 0.12 3.71 7.75 -2.91 -0.02 3.69 16 45 H 0.15 2.57 8.06 -2.91 -0.02 2.54 16 46 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 47 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 48 H 0.11 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -79.78 396.28 1.74 -78.04 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: 0.30 Total: 18.58 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.00 Total: 8.18 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -5.22 Total: -103.61 kcal Atomic # 8 Polarization: -48.56 SS G_CDS: -0.36 Total: -48.92 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -79.78 1.74 -78.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739071973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.612 kcal (2) G-P(sol) polarization free energy of solvation -79.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds