Wall clock time and date at job start Sat Apr 11 2020 07:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86803 * 119.99913 * 2 1 4 4 H 1.48506 * 109.46874 * 269.99539 * 3 2 1 5 5 H 1.48500 * 109.46976 * 29.99216 * 3 2 1 6 6 H 1.48495 * 109.47465 * 149.99720 * 3 2 1 7 7 C 1.40122 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.46195 * 120.00161 * 0.02562 * 7 2 1 10 10 O 1.21727 * 120.00043 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00071 * 179.97438 * 9 7 2 12 12 C 1.39081 * 119.99880 * 175.14671 * 11 9 7 13 13 C 1.39271 * 119.93255 * 35.53453 * 12 11 9 14 14 C 1.37607 * 120.07003 * 180.02562 * 13 12 11 15 15 C 1.39833 * 119.92669 * 359.97438 * 14 13 12 16 16 C 1.47468 * 120.06402 * 179.97438 * 15 14 13 17 17 O 1.21500 * 119.99927 * 359.97438 * 16 15 14 18 18 O 1.34754 * 119.99801 * 180.02562 * 16 15 14 19 19 C 1.45204 * 116.99708 * 180.02562 * 18 16 15 20 20 C 1.52993 * 109.47017 * 179.97438 * 19 18 16 21 21 N 1.46901 * 109.47112 * 63.54296 * 20 19 18 22 22 C 1.46847 * 110.99946 * 67.08281 * 21 20 19 23 23 C 1.53032 * 109.52294 * 185.84104 * 22 21 20 24 24 C 1.53122 * 109.27954 * 300.81921 * 23 22 21 25 25 C 1.53116 * 109.16065 * 57.65820 * 24 23 22 26 26 C 1.46845 * 111.00197 * 191.29295 * 21 20 19 27 27 C 1.39833 * 119.87157 * 0.25369 * 15 14 13 28 28 C 1.37613 * 119.92686 * 359.52913 * 27 15 14 29 29 H 0.96998 * 120.00345 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00247 * 355.14912 * 11 9 7 31 31 H 1.08000 * 119.96408 * 0.02562 * 13 12 11 32 32 H 1.08000 * 120.03581 * 179.97438 * 14 13 12 33 33 H 1.09006 * 109.47169 * 59.99276 * 19 18 16 34 34 H 1.08994 * 109.47029 * 299.99631 * 19 18 16 35 35 H 1.08998 * 109.47537 * 303.54395 * 20 19 18 36 36 H 1.09005 * 109.47415 * 183.54126 * 20 19 18 37 37 H 1.08998 * 109.46402 * 65.82426 * 22 21 20 38 38 H 1.08995 * 109.46384 * 305.85878 * 22 21 20 39 39 H 1.09004 * 109.50622 * 180.87916 * 23 22 21 40 40 H 1.09003 * 109.50917 * 60.76241 * 23 22 21 41 41 H 1.08998 * 109.52273 * 177.55739 * 24 23 22 42 42 H 1.08999 * 109.52107 * 297.74833 * 24 23 22 43 43 H 1.09000 * 109.50552 * 62.28201 * 25 24 23 44 44 H 1.08995 * 109.50776 * 182.41106 * 25 24 23 45 45 H 1.09001 * 109.46549 * 294.17395 * 26 21 20 46 46 H 1.09002 * 109.46167 * 54.14518 * 26 21 20 47 47 H 1.08001 * 120.04207 * 179.74918 * 27 15 14 48 48 H 1.08002 * 119.96031 * 180.20993 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4377 2.6527 0.6999 6 1 3.5379 1.4403 0.7001 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2134 0.0010 9 6 1.2761 -2.4796 0.0005 10 8 0.0588 -2.4797 -0.0004 11 7 1.9500 -3.6468 0.0005 12 6 1.2584 -4.8491 0.1024 13 6 0.0123 -4.9876 -0.5040 14 6 -0.6747 -6.1757 -0.4046 15 6 -0.1201 -7.2448 0.3059 16 6 -0.8540 -8.5193 0.4149 17 8 -1.9417 -8.6410 -0.1125 18 8 -0.3186 -9.5485 1.1004 19 6 -1.0966 -10.7728 1.1657 20 6 -0.3326 -11.8198 1.9785 21 7 -0.1771 -11.3485 3.3611 22 6 -1.4751 -11.2858 4.0449 23 6 -1.2948 -10.6558 5.4278 24 6 -0.3082 -11.4974 6.2420 25 6 1.0198 -11.5872 5.4851 26 6 0.7723 -12.1902 4.1004 27 6 1.1290 -7.1012 0.9178 28 6 1.8131 -5.9120 0.8110 29 1 -0.4850 0.8400 -0.0004 30 1 2.9174 -3.6483 -0.0705 31 1 -0.4152 -4.1616 -1.0530 32 1 -1.6411 -6.2824 -0.8747 33 1 -1.2668 -11.1494 0.1570 34 1 -2.0547 -10.5693 1.6439 35 1 0.6508 -11.9771 1.5355 36 1 -0.8871 -12.7583 1.9748 37 1 -1.8771 -12.2930 4.1543 38 1 -2.1661 -10.6810 3.4576 39 1 -2.2558 -10.6236 5.9412 40 1 -0.9059 -9.6434 5.3187 41 1 -0.1435 -11.0285 7.2121 42 1 -0.7147 -12.4986 6.3846 43 1 1.4451 -10.5895 5.3768 44 1 1.7125 -12.2206 6.0393 45 1 0.3599 -13.1932 4.2096 46 1 1.7138 -12.2423 3.5535 47 1 1.5580 -7.9238 1.4707 48 1 2.7795 -5.8016 1.2805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000747682555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:53 Heat of formation + Delta-G solvation = -102.444124 kcal Electronic energy + Delta-G solvation = -29416.515165 eV Core-core repulsion = 25242.818891 eV Total energy + Delta-G solvation = -4173.696274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.32541 -39.35406 -38.95052 -36.99789 -36.19892 -34.12135 -33.59670 -32.55889 -31.18493 -30.53401 -29.95078 -29.02878 -26.51840 -24.82308 -23.53292 -23.32545 -22.40808 -21.59881 -20.78623 -19.99801 -19.81632 -17.87934 -17.42983 -16.96485 -16.76156 -16.20374 -15.74565 -15.57327 -15.27430 -14.74763 -14.69551 -14.41810 -14.20890 -13.96902 -13.84148 -13.63715 -13.28232 -13.14937 -12.99838 -12.76450 -12.62963 -12.42597 -12.37334 -11.95544 -11.81660 -11.60970 -11.47830 -11.34002 -11.14814 -11.00740 -10.77046 -10.74086 -10.66168 -10.59390 -10.43216 -10.39676 -10.22228 -9.43237 -8.97384 -8.59097 -8.56070 -7.83349 -7.30043 -6.42356 -4.90592 1.21038 1.92323 2.82715 2.93718 3.04403 3.10729 3.14052 3.52273 3.92727 4.19315 4.42454 4.45832 4.49219 4.51015 4.60860 4.69721 4.84121 4.93984 4.95444 5.09552 5.13512 5.19696 5.27916 5.28296 5.36294 5.41839 5.45507 5.47329 5.54397 5.59868 5.66010 5.67747 5.83532 5.87674 5.90101 6.00211 6.10965 6.14178 6.46182 6.51910 6.67836 6.77294 6.80692 6.91298 6.97466 7.19866 7.26386 7.60752 7.91846 8.05036 8.06623 8.77008 9.07601 10.27352 10.47671 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.001974 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.957681 B =14180.723191 C =14971.517439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.085 3.915 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.539 3.461 10 O -0.556 6.556 11 N -0.695 5.695 12 C 0.232 3.768 13 C -0.148 4.148 14 C -0.032 4.032 15 C -0.184 4.184 16 C 0.515 3.485 17 O -0.526 6.526 18 O -0.338 6.338 19 C 0.072 3.928 20 C 0.056 3.944 21 N -0.530 5.530 22 C 0.051 3.949 23 C -0.118 4.118 24 C -0.121 4.121 25 C -0.118 4.118 26 C 0.058 3.942 27 C -0.035 4.035 28 C -0.194 4.194 29 H 0.273 0.727 30 H 0.397 0.603 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.055 0.945 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.065 0.935 45 H 0.030 0.970 46 H 0.076 0.924 47 H 0.132 0.868 48 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -23.162 7.506 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.384 5.384 2 C -0.136 4.136 3 Si 0.739 3.261 4 H -0.195 1.195 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.092 0.908 9 C 0.346 3.654 10 O -0.437 6.437 11 N -0.337 5.337 12 C 0.130 3.870 13 C -0.168 4.168 14 C -0.051 4.051 15 C -0.187 4.187 16 C 0.362 3.638 17 O -0.417 6.417 18 O -0.254 6.254 19 C -0.003 4.003 20 C -0.071 4.071 21 N -0.255 5.255 22 C -0.076 4.076 23 C -0.156 4.156 24 C -0.159 4.159 25 C -0.156 4.156 26 C -0.070 4.070 27 C -0.054 4.054 28 C -0.216 4.216 29 H 0.084 0.916 30 H 0.231 0.769 31 H 0.169 0.831 32 H 0.147 0.853 33 H 0.090 0.910 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.083 0.917 45 H 0.048 0.952 46 H 0.094 0.906 47 H 0.150 0.850 48 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 1.536 -22.504 7.360 23.727 hybrid contribution 0.417 -0.123 0.044 0.437 sum 1.953 -22.627 7.404 23.887 Atomic orbital electron populations 1.69973 1.07189 1.28024 1.33219 1.25763 0.94744 1.00627 0.92509 0.86248 0.80106 0.80738 0.79043 1.19511 1.20237 1.18720 1.20854 0.93877 0.88822 1.53561 0.90820 1.18466 0.87553 0.82029 0.77312 1.90635 1.13634 1.85784 1.53665 1.44236 1.10095 1.04401 1.74982 1.18303 0.92547 0.86204 0.89949 1.21460 0.95746 0.97664 1.01975 1.21082 0.98713 0.90879 0.94469 1.18810 0.97697 0.91954 1.10232 1.21307 0.83850 0.84008 0.74587 1.90788 1.21678 1.83218 1.46009 1.86638 1.48870 1.21874 1.68025 1.23009 0.94479 0.82788 1.00028 1.22165 1.01603 0.94506 0.88876 1.61860 1.10377 1.52102 1.01205 1.22169 0.90730 0.99166 0.95567 1.21582 0.99283 1.00403 0.94319 1.21576 0.95750 0.99831 0.98708 1.21589 0.97260 1.02143 0.94561 1.22080 0.96253 0.93713 0.94965 1.21047 0.92438 0.96798 0.95087 1.20888 1.02576 0.94219 1.03870 0.91564 0.76940 0.83101 0.85276 0.90962 0.91315 0.89380 0.92740 0.95101 0.90605 0.91611 0.90678 0.91778 0.92549 0.90719 0.91657 0.95222 0.90600 0.85042 0.85677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.46 11.82 55.55 0.66 -20.80 16 2 C 0.09 2.24 5.50 -17.35 -0.10 2.14 16 3 Si 0.91 18.99 29.56 -169.99 -5.02 13.97 16 4 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.54 -14.11 9.54 -35.68 -0.34 -14.45 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.54 14.39 7.57 -13.07 -0.10 14.29 16 10 O -0.56 -16.78 12.44 5.16 0.06 -16.71 16 11 N -0.70 -14.84 5.29 -11.19 -0.06 -14.89 16 12 C 0.23 4.64 6.29 -83.81 -0.53 4.11 16 13 C -0.15 -3.09 8.66 -39.43 -0.34 -3.44 16 14 C -0.03 -0.60 9.58 -39.22 -0.38 -0.98 16 15 C -0.18 -3.17 5.88 -104.94 -0.62 -3.79 16 16 C 0.52 8.51 7.89 34.49 0.27 8.78 16 17 O -0.53 -9.73 16.13 -19.26 -0.31 -10.04 16 18 O -0.34 -4.69 9.39 -40.64 -0.38 -5.07 16 19 C 0.07 0.77 5.53 37.15 0.21 0.98 16 20 C 0.06 0.47 5.36 -3.83 -0.02 0.45 16 21 N -0.53 -4.89 4.58 -234.67 -1.07 -5.97 16 22 C 0.05 0.45 5.30 -3.84 -0.02 0.43 16 23 C -0.12 -0.99 6.09 -26.65 -0.16 -1.15 16 24 C -0.12 -0.87 6.00 -26.61 -0.16 -1.03 16 25 C -0.12 -0.86 6.09 -26.65 -0.16 -1.02 16 26 C 0.06 0.44 5.46 -3.83 -0.02 0.42 16 27 C -0.03 -0.54 9.60 -39.21 -0.38 -0.92 16 28 C -0.19 -3.20 9.95 -39.43 -0.39 -3.59 16 29 H 0.27 7.03 8.29 -40.82 -0.34 6.69 16 30 H 0.40 7.08 8.80 -40.82 -0.36 6.72 16 31 H 0.15 3.58 6.22 -52.49 -0.33 3.26 16 32 H 0.13 2.32 7.64 -52.49 -0.40 1.92 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.76 6.32 -51.93 -0.33 0.44 16 35 H 0.09 0.68 7.96 -51.93 -0.41 0.27 16 36 H 0.05 0.36 8.11 -51.93 -0.42 -0.06 16 37 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.08 0.73 6.20 -51.93 -0.32 0.41 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 46 H 0.08 0.54 8.00 -51.93 -0.42 0.13 16 47 H 0.13 1.75 7.60 -52.49 -0.40 1.35 16 48 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 395.16 15.07 5.96 5.96 Total: -1.00 -32.79 395.16 -10.57 -43.36 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -7.16 Total: 8.97 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: -3.23 Total: 1.24 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.48 Total: -41.66 kcal Atomic # 8 Polarization: -31.20 SS G_CDS: -0.63 Total: -31.83 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.97 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.79 -10.57 -43.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747682555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.087 kcal (2) G-P(sol) polarization free energy of solvation -32.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds