Wall clock time and date at job start Sat Apr 11 2020 07:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30637 * 1 3 3 Si 1.86803 * 119.99913 * 2 1 4 4 H 1.48506 * 109.46874 * 269.99539 * 3 2 1 5 5 H 1.48500 * 109.46976 * 29.99216 * 3 2 1 6 6 H 1.48495 * 109.47465 * 149.99720 * 3 2 1 7 7 C 1.40122 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99794 * 180.02562 * 7 2 1 9 9 C 1.46195 * 120.00161 * 0.02562 * 7 2 1 10 10 O 1.21727 * 120.00043 * 0.02562 * 9 7 2 11 11 N 1.34775 * 120.00071 * 179.97438 * 9 7 2 12 12 C 1.39081 * 119.99880 * 175.14671 * 11 9 7 13 13 C 1.39271 * 119.93255 * 35.53453 * 12 11 9 14 14 C 1.37607 * 120.07003 * 180.02562 * 13 12 11 15 15 C 1.39833 * 119.92669 * 359.97438 * 14 13 12 16 16 C 1.47468 * 120.06402 * 179.97438 * 15 14 13 17 17 O 1.21500 * 119.99927 * 359.97438 * 16 15 14 18 18 O 1.34754 * 119.99801 * 180.02562 * 16 15 14 19 19 C 1.45204 * 116.99708 * 180.02562 * 18 16 15 20 20 C 1.52993 * 109.47017 * 179.97438 * 19 18 16 21 21 N 1.46901 * 109.47112 * 63.54296 * 20 19 18 22 22 C 1.46847 * 110.99946 * 67.08281 * 21 20 19 23 23 C 1.53032 * 109.52294 * 185.84104 * 22 21 20 24 24 C 1.53122 * 109.27954 * 300.81921 * 23 22 21 25 25 C 1.53116 * 109.16065 * 57.65820 * 24 23 22 26 26 C 1.46845 * 111.00197 * 191.29295 * 21 20 19 27 27 C 1.39833 * 119.87157 * 0.25369 * 15 14 13 28 28 C 1.37613 * 119.92686 * 359.52913 * 27 15 14 29 29 H 0.96998 * 120.00345 * 0.02562 * 1 2 3 30 30 H 0.96997 * 120.00247 * 355.14912 * 11 9 7 31 31 H 1.08000 * 119.96408 * 0.02562 * 13 12 11 32 32 H 1.08000 * 120.03581 * 179.97438 * 14 13 12 33 33 H 1.09006 * 109.47169 * 59.99276 * 19 18 16 34 34 H 1.08994 * 109.47029 * 299.99631 * 19 18 16 35 35 H 1.08998 * 109.47537 * 303.54395 * 20 19 18 36 36 H 1.09005 * 109.47415 * 183.54126 * 20 19 18 37 37 H 1.08998 * 109.46402 * 65.82426 * 22 21 20 38 38 H 1.08995 * 109.46384 * 305.85878 * 22 21 20 39 39 H 1.09004 * 109.50622 * 180.87916 * 23 22 21 40 40 H 1.09003 * 109.50917 * 60.76241 * 23 22 21 41 41 H 1.08998 * 109.52273 * 177.55739 * 24 23 22 42 42 H 1.08999 * 109.52107 * 297.74833 * 24 23 22 43 43 H 1.09000 * 109.50552 * 62.28201 * 25 24 23 44 44 H 1.08995 * 109.50776 * 182.41106 * 25 24 23 45 45 H 1.09001 * 109.46549 * 294.17395 * 26 21 20 46 46 H 1.09002 * 109.46167 * 54.14518 * 26 21 20 47 47 H 1.08001 * 120.04207 * 179.74918 * 27 15 14 48 48 H 1.08002 * 119.96031 * 180.20993 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6178 0.0000 4 1 2.4879 2.0464 -1.4001 5 1 1.4377 2.6527 0.6999 6 1 3.5379 1.4403 0.7001 7 6 2.0070 -1.2135 0.0005 8 1 3.0870 -1.2134 0.0010 9 6 1.2761 -2.4796 0.0005 10 8 0.0588 -2.4797 -0.0004 11 7 1.9500 -3.6468 0.0005 12 6 1.2584 -4.8491 0.1024 13 6 0.0123 -4.9876 -0.5040 14 6 -0.6747 -6.1757 -0.4046 15 6 -0.1201 -7.2448 0.3059 16 6 -0.8540 -8.5193 0.4149 17 8 -1.9417 -8.6410 -0.1125 18 8 -0.3186 -9.5485 1.1004 19 6 -1.0966 -10.7728 1.1657 20 6 -0.3326 -11.8198 1.9785 21 7 -0.1771 -11.3485 3.3611 22 6 -1.4751 -11.2858 4.0449 23 6 -1.2948 -10.6558 5.4278 24 6 -0.3082 -11.4974 6.2420 25 6 1.0198 -11.5872 5.4851 26 6 0.7723 -12.1902 4.1004 27 6 1.1290 -7.1012 0.9178 28 6 1.8131 -5.9120 0.8110 29 1 -0.4850 0.8400 -0.0004 30 1 2.9174 -3.6483 -0.0705 31 1 -0.4152 -4.1616 -1.0530 32 1 -1.6411 -6.2824 -0.8747 33 1 -1.2668 -11.1494 0.1570 34 1 -2.0547 -10.5693 1.6439 35 1 0.6508 -11.9771 1.5355 36 1 -0.8871 -12.7583 1.9748 37 1 -1.8771 -12.2930 4.1543 38 1 -2.1661 -10.6810 3.4576 39 1 -2.2558 -10.6236 5.9412 40 1 -0.9059 -9.6434 5.3187 41 1 -0.1435 -11.0285 7.2121 42 1 -0.7147 -12.4986 6.3846 43 1 1.4451 -10.5895 5.3768 44 1 1.7125 -12.2206 6.0393 45 1 0.3599 -13.1932 4.2096 46 1 1.7138 -12.2423 3.5535 47 1 1.5580 -7.9238 1.4707 48 1 2.7795 -5.8016 1.2805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000747682555.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:52 Heat of formation + Delta-G solvation = -122.847584 kcal Electronic energy + Delta-G solvation = -29417.399925 eV Core-core repulsion = 25242.818891 eV Total energy + Delta-G solvation = -4174.581035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60822 -40.71903 -39.88068 -38.67899 -37.44837 -35.41166 -34.80665 -34.56357 -31.99802 -31.78961 -31.29199 -30.08417 -28.41159 -25.69453 -24.82914 -23.96857 -23.84410 -22.60227 -22.12468 -21.48372 -20.57417 -19.56756 -18.92741 -18.18334 -17.78553 -17.66365 -17.54121 -16.69835 -16.13089 -16.02890 -15.72115 -15.52994 -15.29574 -15.24662 -14.85634 -14.77841 -14.62492 -14.44120 -14.21382 -14.11540 -13.78730 -13.52927 -13.44211 -13.16118 -13.09412 -13.05828 -12.79031 -12.72892 -12.39312 -12.14828 -12.10073 -12.03323 -11.64849 -11.63017 -11.52265 -11.22527 -11.17113 -11.13779 -10.88919 -10.09206 -9.80433 -9.22008 -8.96174 -8.38490 -6.96619 -0.24260 0.47679 1.39800 1.41294 1.55501 1.58032 1.68018 2.20361 2.36380 2.79793 2.88601 2.91376 3.53089 3.67573 3.86235 3.89397 3.94638 3.96687 4.05065 4.10218 4.14254 4.32792 4.36073 4.39650 4.45652 4.49516 4.56676 4.65799 4.69034 4.70361 4.78530 4.85666 4.95457 5.05517 5.07078 5.09923 5.18390 5.24887 5.25969 5.32576 5.34946 5.43180 5.46052 5.50505 5.69863 5.78556 6.13356 6.13592 6.18876 6.26708 6.76421 6.78264 7.27360 8.30536 8.54485 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016545 B = 0.001974 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.957681 B =14180.723191 C =14971.517439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.028 3.972 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.560 4.560 8 H 0.098 0.902 9 C 0.526 3.474 10 O -0.604 6.604 11 N -0.687 5.687 12 C 0.205 3.795 13 C -0.169 4.169 14 C -0.038 4.038 15 C -0.182 4.182 16 C 0.521 3.479 17 O -0.550 6.550 18 O -0.332 6.332 19 C 0.065 3.935 20 C 0.062 3.938 21 N -0.550 5.550 22 C 0.052 3.948 23 C -0.119 4.119 24 C -0.118 4.118 25 C -0.117 4.117 26 C 0.058 3.942 27 C -0.018 4.018 28 C -0.174 4.174 29 H 0.278 0.722 30 H 0.414 0.586 31 H 0.111 0.889 32 H 0.126 0.874 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.061 0.939 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.040 0.960 46 H 0.082 0.918 47 H 0.167 0.833 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.299 -25.164 8.890 27.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.169 1.169 7 C -0.596 4.596 8 H 0.116 0.884 9 C 0.333 3.667 10 O -0.489 6.489 11 N -0.330 5.330 12 C 0.105 3.895 13 C -0.190 4.190 14 C -0.057 4.057 15 C -0.185 4.185 16 C 0.368 3.632 17 O -0.443 6.443 18 O -0.247 6.247 19 C -0.009 4.009 20 C -0.065 4.065 21 N -0.275 5.275 22 C -0.076 4.076 23 C -0.157 4.157 24 C -0.156 4.156 25 C -0.155 4.155 26 C -0.069 4.069 27 C -0.037 4.037 28 C -0.195 4.195 29 H 0.088 0.912 30 H 0.250 0.750 31 H 0.129 0.871 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.095 0.905 37 H 0.060 0.940 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.058 0.942 46 H 0.100 0.900 47 H 0.185 0.815 48 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.191 -24.579 8.752 26.425 hybrid contribution -0.445 0.269 -0.358 0.632 sum 3.745 -24.311 8.394 25.990 Atomic orbital electron populations 1.70143 1.09625 1.29471 1.34874 1.27034 0.95553 1.05130 0.91130 0.84947 0.78823 0.74679 0.79482 1.18595 1.19973 1.16852 1.21417 0.95184 0.89260 1.53690 0.88443 1.18817 0.87225 0.83794 0.76820 1.90606 1.15693 1.86962 1.55653 1.43728 1.10733 1.03695 1.74889 1.18520 0.92577 0.86819 0.91610 1.21179 0.97070 0.97450 1.03327 1.21012 0.98682 0.90873 0.95148 1.18981 0.98361 0.91850 1.09295 1.21123 0.83280 0.84348 0.74403 1.90782 1.22725 1.83704 1.47090 1.86615 1.48991 1.22271 1.66862 1.23346 0.94544 0.81882 1.01120 1.22176 1.02107 0.94115 0.88121 1.61849 1.10725 1.53170 1.01765 1.22134 0.90578 0.99486 0.95368 1.21580 0.99932 0.99498 0.94679 1.21564 0.95443 1.00030 0.98572 1.21591 0.97457 1.01609 0.94836 1.22115 0.96120 0.93851 0.94822 1.21391 0.91221 0.97274 0.93818 1.21183 1.03536 0.92798 1.01951 0.91198 0.74968 0.87087 0.85564 0.90148 0.91921 0.88377 0.90475 0.93961 0.92037 0.91003 0.92737 0.91486 0.91621 0.92256 0.90124 0.94219 0.89986 0.81523 0.82086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.94 11.82 21.85 0.26 -47.68 16 2 C 0.03 1.49 5.50 85.33 0.47 1.96 16 3 Si 1.00 38.86 29.56 68.60 2.03 40.89 16 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -10.43 7.11 99.48 0.71 -9.72 16 6 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 7 C -0.56 -29.88 9.54 24.80 0.24 -29.65 16 8 H 0.10 4.54 7.85 -2.91 -0.02 4.52 16 9 C 0.53 29.13 7.57 86.31 0.65 29.79 16 10 O -0.60 -38.72 12.44 -4.43 -0.06 -38.77 16 11 N -0.69 -29.72 5.29 -307.51 -1.63 -31.34 16 12 C 0.20 8.27 6.29 38.49 0.24 8.52 16 13 C -0.17 -7.51 8.66 22.37 0.19 -7.31 16 14 C -0.04 -1.48 9.58 22.51 0.22 -1.27 16 15 C -0.18 -6.12 5.88 -20.07 -0.12 -6.24 16 16 C 0.52 16.67 7.89 70.25 0.55 17.23 16 17 O -0.55 -20.30 16.13 19.84 0.32 -19.98 16 18 O -0.33 -8.53 9.39 -56.65 -0.53 -9.06 16 19 C 0.07 1.28 5.53 71.98 0.40 1.68 16 20 C 0.06 0.86 5.36 86.30 0.46 1.32 16 21 N -0.55 -8.83 4.58 -896.37 -4.11 -12.94 16 22 C 0.05 0.83 5.30 86.32 0.46 1.29 16 23 C -0.12 -1.86 6.09 30.65 0.19 -1.67 16 24 C -0.12 -1.48 6.00 30.67 0.18 -1.29 16 25 C -0.12 -1.45 6.09 30.65 0.19 -1.26 16 26 C 0.06 0.72 5.46 86.33 0.47 1.19 16 27 C -0.02 -0.52 9.60 22.51 0.22 -0.31 16 28 C -0.17 -5.33 9.95 22.37 0.22 -5.11 16 29 H 0.28 14.87 8.29 -92.71 -0.77 14.10 16 30 H 0.41 14.50 8.80 -92.71 -0.82 13.68 16 31 H 0.11 5.81 6.22 -2.91 -0.02 5.79 16 32 H 0.13 4.85 7.64 -2.91 -0.02 4.83 16 33 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.06 1.33 6.32 -2.39 -0.02 1.32 16 35 H 0.10 1.18 7.96 -2.39 -0.02 1.16 16 36 H 0.08 0.76 8.11 -2.38 -0.02 0.74 16 37 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.06 1.14 6.20 -2.39 -0.01 1.12 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.04 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.08 0.91 8.00 -2.39 -0.02 0.89 16 47 H 0.17 3.66 7.60 -2.91 -0.02 3.64 16 48 H 0.16 3.80 8.06 -2.91 -0.02 3.78 16 Total: -1.00 -75.38 395.16 1.68 -73.69 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: 0.17 Total: 36.33 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.23 Total: 8.86 kcal Atomic # 7 Polarization: -86.49 SS G_CDS: -5.47 Total: -91.96 kcal Atomic # 8 Polarization: -67.55 SS G_CDS: -0.27 Total: -67.81 kcal Atomic # 14 Polarization: 38.86 SS G_CDS: 2.03 Total: 40.89 kcal Total: -75.38 1.68 -73.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000747682555.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.154 kcal (2) G-P(sol) polarization free energy of solvation -75.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds