Wall clock time and date at job start Sat Apr 11 2020 07:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86803 * 120.00108 * 2 1 4 4 H 1.48492 * 109.46956 * 269.99557 * 3 2 1 5 5 H 1.48495 * 109.47113 * 29.99837 * 3 2 1 6 6 H 1.48501 * 109.46725 * 149.99906 * 3 2 1 7 7 C 1.38657 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00259 * 180.02562 * 7 2 1 9 9 O 1.34829 * 119.99825 * 0.02562 * 7 2 1 10 10 C 1.35753 * 116.99797 * 174.96203 * 9 7 2 11 11 C 1.38952 * 120.03187 * 185.31645 * 10 9 7 12 12 C 1.38123 * 120.06989 * 180.02562 * 11 10 9 13 13 C 1.38203 * 120.13542 * 359.71652 * 12 11 10 14 14 C 1.38915 * 120.06727 * 0.55751 * 13 12 11 15 15 N 1.39948 * 120.03696 * 179.71506 * 14 13 12 16 16 C 1.34781 * 120.00052 * 324.64848 * 15 14 13 17 17 O 1.21587 * 119.99815 * 4.24401 * 16 15 14 18 18 N 1.34771 * 120.00049 * 184.24275 * 16 15 14 19 19 C 1.47023 * 125.64601 * 359.69443 * 18 16 15 20 20 C 1.54321 * 107.27340 * 180.96676 * 19 18 16 21 21 C 1.55158 * 102.86301 * 22.52297 * 20 19 18 22 22 H 1.09001 * 111.00140 * 82.37712 * 21 20 19 23 23 C 1.53003 * 111.03699 * 206.21544 * 21 20 19 24 24 H 1.08999 * 110.43282 * 52.57894 * 23 21 20 25 25 C 1.54811 * 110.48426 * 289.88948 * 23 21 20 26 26 C 1.54994 * 102.09020 * 220.44253 * 25 23 21 27 27 O 1.44371 * 103.49274 * 37.02518 * 26 25 23 28 28 C 1.43741 * 106.97969 * 319.94048 * 27 26 25 29 29 C 1.47419 * 125.64859 * 179.97438 * 18 16 15 30 30 C 1.38728 * 120.03599 * 5.34044 * 10 9 7 31 31 H 0.97000 * 119.99399 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.96957 * 0.04108 * 11 10 9 33 33 H 1.08001 * 119.93248 * 180.02562 * 12 11 10 34 34 H 1.08009 * 119.96543 * 180.27726 * 13 12 11 35 35 H 0.96997 * 119.99908 * 144.36590 * 15 14 13 36 36 H 1.08998 * 109.87941 * 300.50561 * 19 18 16 37 37 H 1.08997 * 109.88601 * 61.67468 * 19 18 16 38 38 H 1.08995 * 110.92337 * 264.10931 * 20 19 18 39 39 H 1.08998 * 110.74430 * 140.85240 * 20 19 18 40 40 H 1.08999 * 110.91172 * 338.64381 * 25 23 21 41 41 H 1.09004 * 110.90572 * 102.24752 * 25 23 21 42 42 H 1.09004 * 110.62062 * 278.52493 * 26 25 23 43 43 H 1.09002 * 110.62209 * 155.52833 * 26 25 23 44 44 H 1.09002 * 109.88242 * 267.09224 * 28 27 26 45 45 H 1.09000 * 110.01026 * 146.00275 * 28 27 26 46 46 H 1.09001 * 110.37365 * 274.67734 * 29 18 16 47 47 H 1.09010 * 110.36551 * 36.89274 * 29 18 16 48 48 H 1.08002 * 120.06775 * 359.95108 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4000 5 1 1.4471 2.6527 0.7000 6 1 3.5472 1.4401 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0010 9 8 1.3347 -2.3684 0.0005 10 6 2.0700 -3.5047 -0.1051 11 6 1.4355 -4.7352 -0.2228 12 6 2.1829 -5.8918 -0.3299 13 6 3.5635 -5.8286 -0.3262 14 6 4.2037 -4.6019 -0.2031 15 7 5.6018 -4.5393 -0.1935 16 6 6.3164 -5.5221 0.3896 17 8 5.7511 -6.5003 0.8388 18 7 7.6576 -5.4205 0.4746 19 6 8.4658 -4.3009 -0.0302 20 6 9.9435 -4.6315 0.2678 21 6 9.9304 -6.1767 0.4069 22 1 9.9734 -6.6573 -0.5705 23 6 11.0746 -6.6573 1.3019 24 1 11.0614 -6.1269 2.2540 25 6 12.4361 -6.4657 0.5904 26 6 13.1879 -7.7661 0.9724 27 8 12.1526 -8.7722 0.9516 28 6 10.9784 -8.1783 1.5302 29 6 8.5577 -6.4163 1.0841 30 6 3.4557 -3.4384 -0.0953 31 1 -0.4849 0.8401 -0.0004 32 1 0.3568 -4.7875 -0.2308 33 1 1.6874 -6.8471 -0.4216 34 1 4.1452 -6.7343 -0.4146 35 1 6.0565 -3.7906 -0.6100 36 1 8.3178 -4.1918 -1.1046 37 1 8.1837 -3.3802 0.4804 38 1 10.2673 -4.1633 1.1973 39 1 10.5824 -4.3242 -0.5602 40 1 12.3043 -6.3955 -0.4894 41 1 12.9561 -5.5884 0.9753 42 1 13.6202 -7.6808 1.9695 43 1 13.9593 -7.9939 0.2368 44 1 10.9434 -8.3911 2.5986 45 1 10.0845 -8.5701 1.0449 46 1 8.6314 -6.2534 2.1593 47 1 8.2021 -7.4258 0.8775 48 1 3.9511 -2.4831 -0.0043 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000750292268.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:06 Heat of formation + Delta-G solvation = -66.402171 kcal Electronic energy + Delta-G solvation = -29689.764448 eV Core-core repulsion = 25517.631070 eV Total energy + Delta-G solvation = -4172.133378 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.81724 -39.95238 -38.88112 -37.80034 -36.29402 -34.31091 -33.65242 -32.22103 -30.91861 -30.26856 -29.31558 -28.56243 -27.69162 -25.31969 -24.48928 -22.83680 -22.25834 -21.75991 -21.57191 -20.48430 -19.73100 -18.54593 -17.86320 -17.36474 -16.89833 -16.66603 -16.01686 -15.72208 -15.33232 -15.07769 -14.96424 -14.75816 -14.39592 -14.04387 -13.97035 -13.90050 -13.55931 -13.36245 -13.03272 -12.92344 -12.79157 -12.58816 -12.50671 -12.30816 -11.87062 -11.72702 -11.51808 -11.48664 -11.21333 -11.14847 -11.08460 -11.01713 -10.96367 -10.77484 -10.45325 -10.07100 -9.99526 -9.58033 -9.44223 -8.83686 -8.77868 -7.69377 -7.11870 -6.43896 -4.03558 2.07326 2.41074 2.53525 3.10937 3.11206 3.16371 3.27668 3.49446 3.74968 3.95439 3.98629 4.02649 4.19495 4.35898 4.56503 4.62842 4.66481 4.72439 4.74639 4.90782 5.01907 5.06551 5.10709 5.21722 5.26042 5.29270 5.31023 5.36540 5.38796 5.41446 5.50515 5.57536 5.65103 5.71857 5.82505 5.96776 6.04398 6.11656 6.28206 6.34916 6.43241 6.61851 6.86509 7.02836 7.13196 7.26519 7.37444 7.45223 7.85512 7.96721 8.00845 8.61915 9.01465 9.72721 10.74263 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.016612 B = 0.002104 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.134753 B =13305.796421 C =14799.859689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.039 3.961 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.391 4.391 8 H 0.090 0.910 9 O -0.177 6.177 10 C 0.168 3.832 11 C -0.200 4.200 12 C -0.064 4.064 13 C -0.203 4.203 14 C 0.195 3.805 15 N -0.679 5.679 16 C 0.722 3.278 17 O -0.568 6.568 18 N -0.638 5.638 19 C 0.095 3.905 20 C -0.122 4.122 21 C -0.094 4.094 22 H 0.090 0.910 23 C -0.110 4.110 24 H 0.089 0.911 25 C -0.149 4.149 26 C 0.044 3.956 27 O -0.378 6.378 28 C 0.047 3.953 29 C 0.129 3.871 30 C -0.257 4.257 31 H 0.269 0.731 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.401 0.599 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.060 0.940 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.088 0.912 46 H 0.067 0.933 47 H 0.080 0.920 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.295 -9.555 0.251 27.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.107 0.893 9 O -0.081 6.081 10 C 0.114 3.886 11 C -0.220 4.220 12 C -0.083 4.083 13 C -0.224 4.224 14 C 0.101 3.899 15 N -0.326 5.326 16 C 0.424 3.576 17 O -0.444 6.444 18 N -0.377 5.377 19 C -0.028 4.028 20 C -0.160 4.160 21 C -0.113 4.113 22 H 0.109 0.891 23 C -0.130 4.130 24 H 0.107 0.893 25 C -0.186 4.186 26 C -0.032 4.032 27 O -0.297 6.297 28 C -0.030 4.030 29 C 0.006 3.994 30 C -0.279 4.279 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.100 0.900 42 H 0.078 0.922 43 H 0.110 0.890 44 H 0.079 0.921 45 H 0.107 0.893 46 H 0.085 0.915 47 H 0.098 0.902 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 25.396 -10.271 0.555 27.400 hybrid contribution 0.770 1.657 -0.064 1.828 sum 26.165 -8.614 0.491 27.551 Atomic orbital electron populations 1.70039 1.05898 1.27569 1.46254 1.25271 0.95837 0.98746 0.96691 0.85730 0.78870 0.80278 0.78617 1.19927 1.20274 1.19354 1.21256 0.91631 0.80900 1.52986 0.89312 1.84009 1.33918 1.11312 1.78833 1.19046 0.89320 0.88173 0.92041 1.20260 0.99723 0.90265 1.11742 1.20556 0.93105 0.96845 0.97829 1.20714 0.94291 0.96574 1.10865 1.17198 0.79695 0.94235 0.98723 1.42549 1.05492 1.25210 1.59304 1.15386 0.79730 0.83355 0.79101 1.90939 1.68431 1.31461 1.53582 1.47521 1.03958 1.22955 1.63288 1.22045 0.91135 0.90273 0.99378 1.22655 0.95014 0.95279 1.03066 1.22462 0.93154 0.96099 0.99560 0.89126 1.22526 0.94470 0.96566 0.99398 0.89306 1.23199 0.94983 0.98719 1.01738 1.23566 0.91486 0.87017 1.01155 1.88894 1.21248 1.36673 1.82926 1.23314 0.89432 0.91705 0.98551 1.22122 0.87268 0.93034 0.96952 1.20777 0.93930 0.97485 1.15730 0.92063 0.86397 0.86619 0.85766 0.76372 0.91407 0.91236 0.90217 0.89805 0.90122 0.90002 0.92179 0.88982 0.92072 0.89342 0.91500 0.90154 0.85373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 2 C 0.04 1.06 5.49 -17.51 -0.10 0.96 16 3 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.39 -10.86 9.49 30.89 0.29 -10.57 16 8 H 0.09 2.27 5.20 -52.49 -0.27 1.99 16 9 O -0.18 -5.07 9.76 0.04 0.00 -5.07 16 10 C 0.17 4.13 6.65 -39.14 -0.26 3.87 16 11 C -0.20 -4.38 9.99 -39.36 -0.39 -4.77 16 12 C -0.06 -1.25 10.03 -39.64 -0.40 -1.65 16 13 C -0.20 -4.06 8.69 -39.34 -0.34 -4.41 16 14 C 0.20 3.87 6.29 -83.71 -0.53 3.34 16 15 N -0.68 -10.91 5.29 -14.24 -0.08 -10.99 16 16 C 0.72 11.64 8.33 -86.92 -0.72 10.91 16 17 O -0.57 -11.21 14.05 5.29 0.07 -11.14 16 18 N -0.64 -7.41 3.33 -176.23 -0.59 -7.99 16 19 C 0.10 0.75 6.15 -3.06 -0.02 0.74 16 20 C -0.12 -0.66 6.16 -24.90 -0.15 -0.81 16 21 C -0.09 -0.58 2.28 -88.46 -0.20 -0.78 16 22 H 0.09 0.61 8.12 -51.93 -0.42 0.19 16 23 C -0.11 -0.58 2.55 -89.09 -0.23 -0.81 16 24 H 0.09 0.41 8.12 -51.93 -0.42 -0.01 16 25 C -0.15 -0.65 6.44 -24.72 -0.16 -0.81 16 26 C 0.04 0.24 7.72 38.21 0.29 0.54 16 27 O -0.38 -3.30 11.52 -35.23 -0.41 -3.70 16 28 C 0.05 0.32 7.05 37.74 0.27 0.59 16 29 C 0.13 1.21 5.71 -2.52 -0.01 1.19 16 30 C -0.26 -5.67 9.08 -39.21 -0.36 -6.02 16 31 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 32 H 0.12 2.46 8.06 -52.49 -0.42 2.03 16 33 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 34 H 0.12 2.47 6.25 -52.48 -0.33 2.15 16 35 H 0.40 5.23 7.81 -40.82 -0.32 4.91 16 36 H 0.07 0.49 8.13 -51.93 -0.42 0.07 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.39 8.02 -51.93 -0.42 -0.03 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.36 7.86 -51.93 -0.41 -0.04 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.63 6.93 -51.93 -0.36 0.27 16 46 H 0.07 0.61 8.04 -51.93 -0.42 0.19 16 47 H 0.08 0.84 7.58 -51.92 -0.39 0.45 16 48 H 0.13 2.76 5.63 -52.49 -0.30 2.46 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -34.66 387.54 -9.43 -44.08 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.99 Total: 6.69 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -3.02 Total: -8.49 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.10 Total: -43.46 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -0.33 Total: -19.91 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.66 -9.43 -44.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000750292268.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.319 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds