Wall clock time and date at job start Sat Apr 11 2020 07:50:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 O 1.45205 * 109.47187 * 90.00078 * 13 12 11 15 15 C 1.34223 * 117.00165 * 180.02562 * 14 13 12 16 16 O 1.20829 * 120.00184 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00145 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.47357 * 299.99492 * 17 15 14 19 19 C 1.53001 * 109.47055 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.47145 * 60.00689 * 19 18 17 21 21 N 1.46500 * 109.47116 * 59.99483 * 20 19 18 22 22 C 1.34777 * 119.99909 * 85.00505 * 21 20 19 23 23 N 1.34776 * 119.99465 * 180.02562 * 22 21 20 24 24 O 1.21579 * 120.00111 * 359.97438 * 22 21 20 25 25 C 1.53001 * 109.46581 * 299.99600 * 20 19 18 26 26 C 1.52991 * 109.47571 * 60.00257 * 25 20 19 27 27 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 28 28 C 1.37614 * 120.25107 * 359.44663 * 27 12 11 29 29 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.13074 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 33 33 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 34 34 H 1.09001 * 109.47440 * 60.00031 * 17 15 14 35 35 H 1.08996 * 109.47360 * 299.99907 * 18 17 15 36 36 H 1.09007 * 109.46676 * 59.99890 * 18 17 15 37 37 H 1.08997 * 109.47771 * 299.99823 * 19 18 17 38 38 H 1.09008 * 109.46647 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.47117 * 179.97438 * 20 19 18 40 40 H 0.97004 * 119.99706 * 265.00033 * 21 20 19 41 41 H 0.96991 * 120.00520 * 359.97438 * 23 22 21 42 42 H 0.97009 * 119.99242 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47286 * 299.99460 * 25 20 19 44 44 H 1.09007 * 109.46676 * 180.02562 * 25 20 19 45 45 H 1.08996 * 109.47496 * 179.97438 * 26 25 20 46 46 H 1.09001 * 109.47467 * 59.99313 * 26 25 20 47 47 H 1.08003 * 119.87291 * 179.69838 * 27 12 11 48 48 H 1.08002 * 120.12976 * 180.27263 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 8 -0.0502 -6.5391 2.7251 15 6 -0.5639 -7.6778 3.2162 16 8 -1.4741 -8.2271 2.6418 17 6 -0.0056 -8.2711 4.4839 18 6 1.4780 -8.5895 4.2878 19 6 2.0449 -9.1913 5.5752 20 6 1.2879 -10.4771 5.9136 21 7 1.4408 -11.4367 4.8173 22 6 2.5225 -12.2392 4.7700 23 7 2.6632 -13.1217 3.7611 24 8 3.3717 -12.1665 5.6370 25 6 -0.1957 -10.1587 6.1097 26 6 -0.7627 -9.5569 4.8225 27 6 -0.4120 -3.5333 1.5634 28 6 0.2229 -2.3640 1.2121 29 1 -0.4850 0.8401 -0.0004 30 1 2.6869 -3.6941 -0.7378 31 1 1.5339 -5.7607 -0.0797 32 1 -1.6958 -5.8233 1.6614 33 1 -0.5250 -6.7642 0.7063 34 1 -0.1193 -7.5575 5.2999 35 1 1.5917 -9.3032 3.4719 36 1 2.0174 -7.6733 4.0471 37 1 1.9314 -8.4773 6.3909 38 1 3.1021 -9.4176 5.4356 39 1 1.6922 -10.9061 6.8306 40 1 0.7633 -11.4945 4.1254 41 1 1.9860 -13.1794 3.0692 42 1 3.4417 -13.6996 3.7273 43 1 -0.3094 -9.4448 6.9255 44 1 -0.7349 -11.0747 6.3513 45 1 -1.8197 -9.3305 4.9621 46 1 -0.6490 -10.2709 4.0067 47 1 -1.2815 -3.5021 2.2032 48 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000776113392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:31 Heat of formation + Delta-G solvation = -125.237647 kcal Electronic energy + Delta-G solvation = -29604.257719 eV Core-core repulsion = 25429.573043 eV Total energy + Delta-G solvation = -4174.684675 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.87329 -40.03524 -38.29327 -37.61284 -36.06748 -34.18924 -33.89290 -33.51813 -31.18857 -30.83951 -30.02024 -29.38987 -27.24820 -24.58136 -23.43772 -22.95376 -22.08749 -21.11403 -20.60381 -20.06799 -19.46662 -18.65239 -17.52859 -17.41721 -17.28915 -16.53994 -16.10097 -15.71117 -15.41135 -15.09530 -15.00338 -14.55500 -14.28518 -14.09002 -13.92575 -13.68397 -13.36935 -12.95271 -12.71245 -12.64296 -12.51004 -12.32746 -12.12450 -12.05017 -11.57583 -11.50157 -11.27566 -11.16526 -11.13536 -10.80190 -10.68270 -10.64726 -10.55580 -10.50849 -10.16755 -10.07770 -9.97469 -9.70697 -9.49298 -9.25404 -9.23143 -7.58466 -7.47671 -6.89090 -4.48178 2.39694 2.42604 2.64476 2.93084 2.97163 2.98540 3.01396 3.06798 3.35038 3.84260 4.18448 4.33943 4.38794 4.46147 4.61864 4.77259 4.83573 5.06723 5.15265 5.17172 5.19308 5.38701 5.52317 5.58687 5.64039 5.66850 5.70021 5.74986 5.79539 5.96118 6.00842 6.05831 6.09480 6.22619 6.28029 6.28864 6.44131 6.62941 6.82732 6.86580 6.95679 7.15891 7.24165 7.49456 7.67279 7.71578 7.93847 7.98328 8.04171 8.17167 8.36678 8.51805 8.76657 8.84657 10.05074 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018488 B = 0.001922 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.128102 B =14567.851688 C =15065.259713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.456 4.456 8 H 0.080 0.920 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.063 4.063 12 C -0.236 4.236 13 C 0.136 3.864 14 O -0.348 6.348 15 C 0.458 3.542 16 O -0.522 6.522 17 C -0.083 4.083 18 C -0.108 4.108 19 C -0.130 4.130 20 C 0.161 3.839 21 N -0.738 5.738 22 C 0.705 3.295 23 N -0.870 5.870 24 O -0.596 6.596 25 C -0.126 4.126 26 C -0.103 4.103 27 C -0.075 4.075 28 C -0.170 4.170 29 H 0.283 0.717 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.396 0.604 41 H 0.396 0.604 42 H 0.414 0.586 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.088 0.912 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 -18.731 9.221 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.082 4.082 12 C -0.237 4.237 13 C 0.064 3.936 14 O -0.264 6.264 15 C 0.302 3.698 16 O -0.412 6.412 17 C -0.102 4.102 18 C -0.146 4.146 19 C -0.169 4.169 20 C 0.056 3.944 21 N -0.395 5.395 22 C 0.403 3.597 23 N -0.438 5.438 24 O -0.474 6.474 25 C -0.164 4.164 26 C -0.141 4.141 27 C -0.094 4.094 28 C -0.190 4.190 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.127 0.873 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.109 0.891 40 H 0.231 0.769 41 H 0.224 0.776 42 H 0.246 0.754 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.095 0.905 46 H 0.086 0.914 47 H 0.106 0.894 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.742 -18.489 9.823 20.950 hybrid contribution -0.201 0.522 -1.033 1.175 sum -0.943 -17.967 8.789 20.024 Atomic orbital electron populations 1.69822 1.07694 1.29523 1.34024 1.25977 0.94769 1.01567 0.92068 0.86276 0.80805 0.80409 0.79167 1.19458 1.19912 1.18284 1.19672 0.98222 0.91224 1.39360 0.90165 1.17686 0.90780 0.92086 0.87844 1.20950 1.03947 0.92809 1.07272 1.20373 0.94349 0.96560 0.96906 1.18653 1.03307 0.91489 1.10236 1.21706 0.95934 0.93815 0.82154 1.86710 1.59747 1.37652 1.42312 1.23654 0.80534 0.79373 0.86286 1.90614 1.28962 1.61417 1.60237 1.21114 0.97048 0.98036 0.93968 1.21470 0.92557 1.02128 0.98447 1.21965 1.00610 0.96482 0.97830 1.20865 0.95363 0.88356 0.89811 1.45281 1.23965 1.40243 1.30001 1.15994 0.82360 0.79082 0.82222 1.43020 1.29200 1.43015 1.28540 1.90965 1.43142 1.73011 1.40319 1.21867 0.94414 1.01801 0.98344 1.21412 0.99967 0.95210 0.97509 1.20531 0.98086 0.92573 0.98220 1.21295 0.99429 0.96739 1.01493 0.90637 0.88724 0.89391 0.92091 0.92224 0.87329 0.91657 0.89941 0.90403 0.90648 0.89068 0.76875 0.77595 0.75447 0.89737 0.90680 0.90487 0.91377 0.89356 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.70 10.97 55.55 0.61 -19.09 16 2 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 18.03 29.59 -169.99 -5.03 13.00 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 5 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.46 -11.75 9.05 -37.74 -0.34 -12.09 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.12 3.10 5.57 -106.83 -0.60 2.50 16 10 C -0.23 -5.54 9.80 -38.88 -0.38 -5.92 16 11 C -0.06 -1.40 9.67 -39.66 -0.38 -1.79 16 12 C -0.24 -5.13 5.54 -104.33 -0.58 -5.71 16 13 C 0.14 2.54 5.58 36.00 0.20 2.74 16 14 O -0.35 -6.07 10.11 -39.24 -0.40 -6.47 16 15 C 0.46 6.75 7.26 36.00 0.26 7.02 16 16 O -0.52 -8.73 15.73 -18.75 -0.30 -9.02 16 17 C -0.08 -0.85 2.63 -91.77 -0.24 -1.09 16 18 C -0.11 -1.08 4.98 -26.73 -0.13 -1.21 16 19 C -0.13 -1.14 5.60 -26.73 -0.15 -1.29 16 20 C 0.16 1.26 2.78 -67.93 -0.19 1.07 16 21 N -0.74 -5.61 4.24 -58.68 -0.25 -5.86 16 22 C 0.71 6.84 8.80 -86.92 -0.77 6.08 16 23 N -0.87 -5.10 8.88 27.63 0.25 -4.85 16 24 O -0.60 -8.43 16.84 5.30 0.09 -8.34 16 25 C -0.13 -0.78 5.61 -26.74 -0.15 -0.93 16 26 C -0.10 -0.84 4.32 -26.73 -0.12 -0.95 16 27 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 28 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 29 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 30 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 31 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 33 H 0.06 1.07 8.07 -51.93 -0.42 0.65 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.06 0.67 7.61 -51.93 -0.39 0.27 16 36 H 0.08 0.94 8.11 -51.93 -0.42 0.52 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.09 0.81 7.58 -51.93 -0.39 0.42 16 40 H 0.40 2.35 6.88 -40.82 -0.28 2.07 16 41 H 0.40 1.26 8.84 -40.82 -0.36 0.90 16 42 H 0.41 2.09 8.93 -40.82 -0.36 1.73 16 43 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 46 H 0.07 0.55 6.46 -51.93 -0.34 0.22 16 47 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 48 H 0.12 3.11 6.18 -52.49 -0.32 2.78 16 LS Contribution 394.29 15.07 5.94 5.94 Total: -1.00 -31.62 394.29 -10.52 -42.14 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -7.07 Total: 9.19 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -4.37 Total: -16.63 kcal Atomic # 7 Polarization: -30.41 SS G_CDS: 0.61 Total: -29.80 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.60 Total: -23.83 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.62 -10.52 -42.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.098 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds