Wall clock time and date at job start Sat Apr 11 2020 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 O 1.45205 * 109.47187 * 90.00078 * 13 12 11 15 15 C 1.34223 * 117.00165 * 180.02562 * 14 13 12 16 16 O 1.20829 * 120.00184 * 359.97438 * 15 14 13 17 17 C 1.50694 * 120.00145 * 179.97438 * 15 14 13 18 18 C 1.53001 * 109.47357 * 299.99492 * 17 15 14 19 19 C 1.53001 * 109.47055 * 179.97438 * 18 17 15 20 20 C 1.53000 * 109.47145 * 60.00689 * 19 18 17 21 21 N 1.46500 * 109.47116 * 59.99483 * 20 19 18 22 22 C 1.34777 * 119.99909 * 85.00505 * 21 20 19 23 23 N 1.34776 * 119.99465 * 180.02562 * 22 21 20 24 24 O 1.21579 * 120.00111 * 359.97438 * 22 21 20 25 25 C 1.53001 * 109.46581 * 299.99600 * 20 19 18 26 26 C 1.52991 * 109.47571 * 60.00257 * 25 20 19 27 27 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 28 28 C 1.37614 * 120.25107 * 359.44663 * 27 12 11 29 29 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 30 30 H 1.07997 * 120.13074 * 0.02562 * 10 9 7 31 31 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 32 32 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 33 33 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 34 34 H 1.09001 * 109.47440 * 60.00031 * 17 15 14 35 35 H 1.08996 * 109.47360 * 299.99907 * 18 17 15 36 36 H 1.09007 * 109.46676 * 59.99890 * 18 17 15 37 37 H 1.08997 * 109.47771 * 299.99823 * 19 18 17 38 38 H 1.09008 * 109.46647 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.47117 * 179.97438 * 20 19 18 40 40 H 0.97004 * 119.99706 * 265.00033 * 21 20 19 41 41 H 0.96991 * 120.00520 * 359.97438 * 23 22 21 42 42 H 0.97009 * 119.99242 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47286 * 299.99460 * 25 20 19 44 44 H 1.09007 * 109.46676 * 180.02562 * 25 20 19 45 45 H 1.08996 * 109.47496 * 179.97438 * 26 25 20 46 46 H 1.09001 * 109.47467 * 59.99313 * 26 25 20 47 47 H 1.08003 * 119.87291 * 179.69838 * 27 12 11 48 48 H 1.08002 * 120.12976 * 180.27263 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 8 -0.0502 -6.5391 2.7251 15 6 -0.5639 -7.6778 3.2162 16 8 -1.4741 -8.2271 2.6418 17 6 -0.0056 -8.2711 4.4839 18 6 1.4780 -8.5895 4.2878 19 6 2.0449 -9.1913 5.5752 20 6 1.2879 -10.4771 5.9136 21 7 1.4408 -11.4367 4.8173 22 6 2.5225 -12.2392 4.7700 23 7 2.6632 -13.1217 3.7611 24 8 3.3717 -12.1665 5.6370 25 6 -0.1957 -10.1587 6.1097 26 6 -0.7627 -9.5569 4.8225 27 6 -0.4120 -3.5333 1.5634 28 6 0.2229 -2.3640 1.2121 29 1 -0.4850 0.8401 -0.0004 30 1 2.6869 -3.6941 -0.7378 31 1 1.5339 -5.7607 -0.0797 32 1 -1.6958 -5.8233 1.6614 33 1 -0.5250 -6.7642 0.7063 34 1 -0.1193 -7.5575 5.2999 35 1 1.5917 -9.3032 3.4719 36 1 2.0174 -7.6733 4.0471 37 1 1.9314 -8.4773 6.3909 38 1 3.1021 -9.4176 5.4356 39 1 1.6922 -10.9061 6.8306 40 1 0.7633 -11.4945 4.1254 41 1 1.9860 -13.1794 3.0692 42 1 3.4417 -13.6996 3.7273 43 1 -0.3094 -9.4448 6.9255 44 1 -0.7349 -11.0747 6.3513 45 1 -1.8197 -9.3305 4.9621 46 1 -0.6490 -10.2709 4.0067 47 1 -1.2815 -3.5021 2.2032 48 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776113392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:30 Heat of formation + Delta-G solvation = -144.155840 kcal Electronic energy + Delta-G solvation = -29605.078073 eV Core-core repulsion = 25429.573043 eV Total energy + Delta-G solvation = -4175.505030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.84495 -40.99755 -39.58300 -38.93649 -37.42429 -35.69020 -34.96905 -34.20784 -32.61282 -31.79786 -31.24869 -30.82162 -28.91873 -25.96553 -24.68384 -23.65816 -22.96947 -22.79693 -21.90799 -21.58413 -20.20508 -19.30536 -19.28004 -18.60267 -18.03514 -17.77967 -17.35988 -17.08109 -16.47084 -16.05347 -15.96150 -15.72505 -15.60298 -15.36729 -15.13877 -14.72919 -14.55830 -14.24487 -13.92529 -13.85250 -13.82120 -13.50941 -13.25599 -13.17659 -13.07378 -13.00605 -12.78241 -12.41663 -12.22180 -12.13685 -11.97426 -11.68527 -11.58988 -11.50036 -11.40681 -11.32422 -11.28000 -11.10694 -11.01227 -10.65902 -9.89490 -9.44659 -9.34301 -8.70183 -6.40364 0.73446 1.09776 1.21965 1.37897 1.43006 1.53399 1.96122 2.05573 2.18928 2.23590 2.71116 3.52897 3.64064 3.67613 3.73289 3.79186 4.04417 4.08079 4.10956 4.13933 4.19518 4.41317 4.45110 4.46829 4.49552 4.52527 4.56348 4.72849 4.85860 4.99294 5.02489 5.11049 5.12509 5.16093 5.21419 5.29226 5.32569 5.36408 5.38335 5.57362 5.63996 5.65374 5.87726 5.93555 6.04611 6.08315 6.13168 6.31042 6.63263 6.79345 6.87635 6.96108 7.12018 7.70865 8.26905 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018488 B = 0.001922 C = 0.001858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.128102 B =14567.851688 C =15065.259713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.035 3.965 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.265 1.265 6 H -0.258 1.258 7 C -0.493 4.493 8 H 0.079 0.921 9 C 0.087 3.913 10 C -0.246 4.246 11 C -0.065 4.065 12 C -0.229 4.229 13 C 0.141 3.859 14 O -0.360 6.360 15 C 0.457 3.543 16 O -0.540 6.540 17 C -0.075 4.075 18 C -0.102 4.102 19 C -0.124 4.124 20 C 0.161 3.839 21 N -0.729 5.729 22 C 0.698 3.302 23 N -0.854 5.854 24 O -0.645 6.645 25 C -0.113 4.113 26 C -0.098 4.098 27 C -0.081 4.081 28 C -0.193 4.193 29 H 0.291 0.709 30 H 0.102 0.898 31 H 0.117 0.883 32 H 0.066 0.934 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.406 0.594 41 H 0.412 0.588 42 H 0.419 0.581 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.107 0.893 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.468 -19.926 9.979 22.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.189 1.189 6 H -0.182 1.182 7 C -0.522 4.522 8 H 0.097 0.903 9 C 0.085 3.915 10 C -0.265 4.265 11 C -0.084 4.084 12 C -0.230 4.230 13 C 0.069 3.931 14 O -0.277 6.277 15 C 0.302 3.698 16 O -0.431 6.431 17 C -0.094 4.094 18 C -0.139 4.139 19 C -0.162 4.162 20 C 0.056 3.944 21 N -0.386 5.386 22 C 0.396 3.604 23 N -0.422 5.422 24 O -0.527 6.527 25 C -0.151 4.151 26 C -0.136 4.136 27 C -0.099 4.099 28 C -0.213 4.213 29 H 0.101 0.899 30 H 0.120 0.880 31 H 0.134 0.866 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.144 0.856 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.243 0.757 41 H 0.242 0.758 42 H 0.251 0.749 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.125 0.875 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.361 -19.722 10.543 22.405 hybrid contribution -0.085 0.707 -1.270 1.456 sum -1.446 -19.015 9.273 21.205 Atomic orbital electron populations 1.69866 1.09083 1.30867 1.34563 1.26823 0.95526 1.04702 0.91050 0.85169 0.79210 0.75760 0.79474 1.18621 1.18924 1.18198 1.19913 0.98488 0.92416 1.41384 0.90293 1.18043 0.91595 0.93200 0.88687 1.21163 1.04617 0.93005 1.07717 1.20689 0.94105 0.97148 0.96416 1.18984 1.02611 0.92491 1.08894 1.21493 0.95670 0.92668 0.83272 1.86680 1.60136 1.39159 1.41692 1.24504 0.80056 0.78186 0.87044 1.90608 1.29873 1.61595 1.61017 1.21263 0.96990 0.99222 0.91896 1.21386 0.92253 1.01299 0.99005 1.21905 0.99405 0.97323 0.97617 1.20874 0.96394 0.87666 0.89473 1.45202 1.23577 1.39641 1.30176 1.16248 0.82234 0.79605 0.82313 1.42872 1.29676 1.41862 1.27828 1.90931 1.44895 1.74514 1.42349 1.21809 0.92796 1.02789 0.97692 1.21417 0.99685 0.94002 0.98515 1.20775 0.98452 0.92446 0.98235 1.21272 1.00333 0.97033 1.02654 0.89861 0.88007 0.86553 0.91591 0.91184 0.85647 0.92024 0.91628 0.88960 0.92687 0.89946 0.75691 0.75815 0.74882 0.88139 0.89098 0.90464 0.91329 0.87538 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.05 10.97 21.83 0.24 -41.81 16 2 C 0.03 1.73 5.14 85.26 0.44 2.17 16 3 Si 0.98 37.29 29.59 68.60 2.03 39.32 16 4 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 5 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 6 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 7 C -0.49 -26.26 9.05 23.46 0.21 -26.04 16 8 H 0.08 4.04 7.91 -2.91 -0.02 4.01 16 9 C 0.09 4.69 5.57 -21.29 -0.12 4.57 16 10 C -0.25 -11.98 9.80 22.73 0.22 -11.76 16 11 C -0.07 -2.85 9.67 22.22 0.21 -2.63 16 12 C -0.23 -9.77 5.54 -19.67 -0.11 -9.88 16 13 C 0.14 5.05 5.58 71.24 0.40 5.44 16 14 O -0.36 -11.95 10.11 -51.35 -0.52 -12.47 16 15 C 0.46 12.55 7.26 71.23 0.52 13.07 16 16 O -0.54 -16.92 15.73 21.96 0.35 -16.58 16 17 C -0.07 -1.35 2.63 -11.54 -0.03 -1.38 16 18 C -0.10 -1.87 4.98 30.59 0.15 -1.71 16 19 C -0.12 -1.98 5.60 30.59 0.17 -1.81 16 20 C 0.16 2.20 2.78 44.99 0.13 2.32 16 21 N -0.73 -9.79 4.24 -457.82 -1.94 -11.73 16 22 C 0.70 12.81 8.80 179.05 1.58 14.38 16 23 N -0.85 -8.74 8.88 -184.75 -1.64 -10.38 16 24 O -0.64 -18.14 16.84 -3.97 -0.07 -18.20 16 25 C -0.11 -1.03 5.61 30.59 0.17 -0.85 16 26 C -0.10 -1.31 4.32 30.59 0.13 -1.17 16 27 C -0.08 -3.73 9.67 22.22 0.21 -3.52 16 28 C -0.19 -10.14 8.70 22.73 0.20 -9.94 16 29 H 0.29 13.40 8.30 -92.71 -0.77 12.63 16 30 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 32 H 0.07 2.28 8.07 -2.39 -0.02 2.27 16 33 H 0.07 2.35 8.07 -2.39 -0.02 2.33 16 34 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.06 1.17 7.61 -2.39 -0.02 1.15 16 36 H 0.06 1.44 8.11 -2.38 -0.02 1.42 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.05 1.13 8.14 -2.38 -0.02 1.12 16 39 H 0.08 1.35 7.58 -2.38 -0.02 1.33 16 40 H 0.41 3.84 6.88 -92.71 -0.64 3.20 16 41 H 0.41 1.75 8.84 -92.71 -0.82 0.93 16 42 H 0.42 3.71 8.93 -92.70 -0.83 2.88 16 43 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 44 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 45 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 46 H 0.07 0.91 6.46 -2.39 -0.02 0.90 16 47 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 48 H 0.10 5.65 6.18 -2.91 -0.02 5.64 16 Total: -1.00 -70.27 394.29 1.66 -68.61 By element: Atomic # 1 Polarization: 33.25 SS G_CDS: -1.27 Total: 31.98 kcal Atomic # 6 Polarization: -33.23 SS G_CDS: 4.49 Total: -28.74 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: -3.34 Total: -63.91 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.24 Total: -47.25 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -70.27 1.66 -68.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776113392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.549 kcal (2) G-P(sol) polarization free energy of solvation -70.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds