Wall clock time and date at job start Sat Apr 11 2020 07:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86809 * 119.99945 * 2 1 4 4 H 1.48497 * 109.46457 * 269.99919 * 3 2 1 5 5 H 1.48497 * 109.47039 * 29.99732 * 3 2 1 6 6 H 1.48490 * 109.47078 * 150.00140 * 3 2 1 7 7 C 1.38656 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99785 * 180.02562 * 7 2 1 9 9 O 1.34822 * 119.99914 * 0.02562 * 7 2 1 10 10 C 1.35755 * 116.99894 * 185.05929 * 9 7 2 11 11 C 1.38873 * 120.06805 * 354.46536 * 10 9 7 12 12 C 1.38110 * 119.93048 * 180.02562 * 11 10 9 13 13 C 1.38297 * 120.06637 * 359.97438 * 12 11 10 14 14 C 1.50701 * 119.93156 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.47006 * 89.99950 * 14 13 12 16 16 C 1.34780 * 119.99775 * 180.02562 * 15 14 13 17 17 O 1.21279 * 120.00117 * 0.02562 * 16 15 14 18 18 C 1.50699 * 120.00004 * 179.97438 * 16 15 14 19 19 H 1.09008 * 109.47213 * 300.00553 * 18 16 15 20 20 C 1.52997 * 109.46950 * 59.99935 * 18 16 15 21 21 C 1.52999 * 109.47075 * 60.00312 * 20 18 16 22 22 C 1.53001 * 109.47171 * 59.99567 * 21 20 18 23 23 C 1.52997 * 109.47153 * 300.00391 * 22 21 20 24 24 H 1.08998 * 109.47114 * 299.99462 * 23 22 21 25 25 C 1.50701 * 109.46799 * 180.02562 * 23 22 21 26 26 N 1.34777 * 120.00440 * 60.00318 * 25 23 22 27 27 O 1.21281 * 119.99702 * 239.99372 * 25 23 22 28 28 C 1.52993 * 109.47196 * 180.02562 * 18 16 15 29 29 C 1.38309 * 120.14042 * 0.30042 * 13 12 11 30 30 C 1.38097 * 120.06490 * 359.44953 * 29 13 12 31 31 H 0.96997 * 119.99864 * 0.02562 * 1 2 3 32 32 H 1.07997 * 120.04077 * 0.03965 * 11 10 9 33 33 H 1.07994 * 119.96476 * 180.02562 * 12 11 10 34 34 H 1.09006 * 109.46598 * 330.00085 * 14 13 12 35 35 H 1.09000 * 109.47256 * 210.00309 * 14 13 12 36 36 H 0.96997 * 120.00319 * 0.02562 * 15 14 13 37 37 H 1.09000 * 109.47571 * 300.00279 * 20 18 16 38 38 H 1.08998 * 109.47122 * 179.97438 * 20 18 16 39 39 H 1.09008 * 109.47211 * 300.00035 * 21 20 18 40 40 H 1.09002 * 109.47640 * 180.02562 * 21 20 18 41 41 H 1.08998 * 109.47125 * 60.00406 * 22 21 20 42 42 H 1.09000 * 109.47053 * 180.02562 * 22 21 20 43 43 H 0.96997 * 119.99909 * 359.97438 * 26 25 23 44 44 H 0.96997 * 120.00158 * 180.02562 * 26 25 23 45 45 H 1.08998 * 109.47236 * 180.02562 * 28 18 16 46 46 H 1.08993 * 109.47667 * 59.99955 * 28 18 16 47 47 H 1.08001 * 119.96132 * 179.70388 * 29 13 12 48 48 H 1.07998 * 120.03178 * 180.27817 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4970 2.0463 -1.4001 5 1 1.4470 2.6527 0.7000 6 1 3.5471 1.4403 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3348 -2.3684 0.0005 10 6 2.0701 -3.5045 0.1077 11 6 3.4572 -3.4393 0.0954 12 6 4.2025 -4.5970 0.2041 13 6 3.5687 -5.8202 0.3257 14 6 4.3849 -7.0814 0.4447 15 7 4.6554 -7.3565 1.8580 16 6 5.3746 -8.4414 2.2077 17 8 5.7982 -9.1896 1.3524 18 6 5.6533 -8.7241 3.6615 19 1 6.2067 -7.8905 4.0942 20 6 4.3303 -8.9007 4.4094 21 6 3.5535 -10.0707 3.8022 22 6 4.3826 -11.3509 3.9230 23 6 5.7056 -11.1741 3.1751 24 1 5.5040 -10.9697 2.1236 25 6 6.5219 -12.4353 3.2936 26 7 6.0347 -13.6002 2.8224 27 8 7.6175 -12.4020 3.8128 28 6 6.4829 -10.0039 3.7823 29 6 2.1874 -5.8889 0.3327 30 6 1.4367 -4.7344 0.2295 31 1 -0.4850 0.8400 -0.0004 32 1 3.9528 -2.4844 0.0011 33 1 5.2812 -4.5469 0.1949 34 1 5.3276 -6.9556 -0.0879 35 1 3.8314 -7.9146 0.0118 36 1 4.3169 -6.7578 2.5421 37 1 3.7396 -7.9887 4.3234 38 1 4.5319 -9.1056 5.4608 39 1 3.3519 -9.8662 2.7506 40 1 2.6107 -10.1963 4.3347 41 1 4.5842 -11.5553 4.9745 42 1 3.8294 -12.1842 3.4900 43 1 5.1584 -13.6270 2.4073 44 1 6.5600 -14.4121 2.8990 45 1 6.6841 -10.2086 4.8338 46 1 7.4253 -9.8777 3.2495 47 1 1.6954 -6.8461 0.4230 48 1 0.3581 -4.7883 0.2395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786874281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:34 Heat of formation + Delta-G solvation = -127.563728 kcal Electronic energy + Delta-G solvation = -29695.973186 eV Core-core repulsion = 25521.187644 eV Total energy + Delta-G solvation = -4174.785542 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.79673 -40.84060 -40.25886 -38.60502 -37.69949 -35.65702 -34.71869 -34.27192 -32.43213 -31.81345 -31.72546 -30.95916 -27.69868 -26.43901 -24.95924 -24.02186 -23.63145 -22.44523 -22.07515 -21.14994 -20.43422 -19.84913 -18.86251 -18.52174 -17.75556 -17.46658 -16.90524 -16.65224 -16.41191 -16.26798 -15.96180 -15.73908 -15.62928 -15.50928 -15.14478 -14.91112 -14.70761 -14.45521 -14.36412 -14.18091 -13.72045 -13.60511 -13.35811 -13.26283 -13.03670 -12.97439 -12.94795 -12.54397 -12.36202 -12.21690 -12.11837 -12.06473 -11.80727 -11.55937 -11.19052 -11.09883 -10.83764 -10.76431 -10.62420 -10.49290 -9.95891 -9.79105 -8.98732 -8.47820 -6.15797 0.56865 0.59283 1.36227 1.44204 1.52959 1.65811 1.74877 2.17260 2.35054 2.65964 2.87099 3.18862 3.50126 3.68464 3.72407 3.76980 3.90206 4.04309 4.05971 4.18836 4.21357 4.26851 4.36505 4.44985 4.48034 4.57215 4.58480 4.69695 4.76321 4.80281 4.83706 5.03184 5.06184 5.10057 5.15358 5.17456 5.23978 5.28125 5.29334 5.33248 5.45731 5.53309 5.57834 5.70764 5.77008 5.92662 6.02282 6.17964 6.46891 6.66381 6.97224 7.33278 7.37778 7.76705 8.74856 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.026757 B = 0.001821 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.189724 B =15374.556656 C =15524.700497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.022 4.022 3 Si 1.016 2.984 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.412 4.412 8 H 0.103 0.897 9 O -0.229 6.229 10 C 0.121 3.879 11 C -0.245 4.245 12 C -0.048 4.048 13 C -0.180 4.180 14 C 0.185 3.815 15 N -0.714 5.714 16 C 0.519 3.481 17 O -0.576 6.576 18 C -0.104 4.104 19 H 0.116 0.884 20 C -0.111 4.111 21 C -0.121 4.121 22 C -0.104 4.104 23 C -0.117 4.117 24 H 0.114 0.886 25 C 0.519 3.481 26 N -0.839 5.839 27 O -0.596 6.596 28 C -0.075 4.075 29 C -0.041 4.041 30 C -0.204 4.204 31 H 0.273 0.727 32 H 0.118 0.882 33 H 0.136 0.864 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.410 0.590 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.415 0.585 44 H 0.405 0.595 45 H 0.077 0.923 46 H 0.047 0.953 47 H 0.150 0.850 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.105 -22.532 8.896 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.136 6.136 10 C 0.070 3.930 11 C -0.264 4.264 12 C -0.067 4.067 13 C -0.181 4.181 14 C 0.062 3.938 15 N -0.365 5.365 16 C 0.307 3.693 17 O -0.456 6.456 18 C -0.125 4.125 19 H 0.134 0.866 20 C -0.149 4.149 21 C -0.158 4.158 22 C -0.142 4.142 23 C -0.137 4.137 24 H 0.132 0.868 25 C 0.305 3.695 26 N -0.402 5.402 27 O -0.477 6.477 28 C -0.114 4.114 29 C -0.060 4.060 30 C -0.223 4.223 31 H 0.082 0.918 32 H 0.136 0.864 33 H 0.154 0.846 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.246 0.754 37 H 0.099 0.901 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.090 0.910 42 H 0.102 0.898 43 H 0.246 0.754 44 H 0.236 0.764 45 H 0.096 0.904 46 H 0.066 0.934 47 H 0.168 0.832 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 8.636 -22.677 8.599 25.745 hybrid contribution -0.124 1.030 -0.293 1.078 sum 8.513 -21.647 8.306 24.699 Atomic orbital electron populations 1.70174 1.07967 1.28820 1.48632 1.26557 0.96824 1.02697 0.95866 0.84611 0.77878 0.74731 0.79185 1.18990 1.19662 1.17609 1.21806 0.92519 0.81363 1.53164 0.87994 1.83945 1.36045 1.12667 1.80896 1.20007 0.91585 0.88011 0.93351 1.21237 0.93079 1.00031 1.12045 1.20936 0.99705 0.90881 0.95129 1.19511 0.93525 0.94114 1.10980 1.19856 0.98057 0.93487 0.82419 1.46200 1.54569 1.27006 1.08736 1.21000 0.76639 0.79897 0.91796 1.90600 1.53064 1.48579 1.53404 1.21432 0.99625 1.00049 0.91416 0.86602 1.21613 0.93232 0.99693 1.00336 1.21568 0.99013 0.94079 1.01139 1.21537 0.92973 0.99082 1.00571 1.21593 0.96171 0.91544 1.04441 0.86836 1.21069 0.85942 0.86599 0.75850 1.43755 1.23775 1.10052 1.62646 1.90698 1.23448 1.87161 1.46391 1.21054 0.97065 0.92043 1.01217 1.20879 0.92961 0.96971 0.95176 1.20464 1.00108 0.90385 1.11351 0.91824 0.86410 0.84597 0.91632 0.90709 0.75368 0.90062 0.89088 0.92823 0.89513 0.91002 0.89847 0.75352 0.76372 0.90420 0.93432 0.83249 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.84 13.67 21.61 0.30 -54.55 16 2 C -0.02 -1.19 5.49 84.83 0.47 -0.72 16 3 Si 1.02 41.56 29.55 68.60 2.03 43.59 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.55 7.11 99.48 0.71 -8.84 16 7 C -0.41 -23.13 9.49 67.92 0.64 -22.48 16 8 H 0.10 5.23 5.20 -2.91 -0.02 5.21 16 9 O -0.23 -13.21 9.76 -22.71 -0.22 -13.43 16 10 C 0.12 5.63 6.65 22.58 0.15 5.78 16 11 C -0.24 -9.83 9.17 22.39 0.21 -9.63 16 12 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 13 C -0.18 -4.81 5.25 -19.83 -0.10 -4.91 16 14 C 0.18 4.02 5.80 85.63 0.50 4.52 16 15 N -0.71 -13.16 5.44 -466.78 -2.54 -15.70 16 16 C 0.52 10.34 5.64 87.66 0.49 10.84 16 17 O -0.58 -15.41 13.66 -3.03 -0.04 -15.45 16 18 C -0.10 -1.53 3.01 -11.54 -0.03 -1.57 16 19 H 0.12 1.38 8.14 -2.38 -0.02 1.37 16 20 C -0.11 -1.15 5.36 30.59 0.16 -0.98 16 21 C -0.12 -1.28 5.70 30.59 0.17 -1.10 16 22 C -0.10 -1.12 5.10 30.59 0.16 -0.96 16 23 C -0.12 -1.98 2.23 -11.53 -0.03 -2.00 16 24 H 0.11 2.32 5.51 -2.39 -0.01 2.31 16 25 C 0.52 10.23 7.43 87.66 0.65 10.88 16 26 N -0.84 -9.28 8.77 -173.53 -1.52 -10.80 16 27 O -0.60 -17.13 16.82 -3.03 -0.05 -17.19 16 28 C -0.08 -1.41 3.67 30.61 0.11 -1.29 16 29 C -0.04 -1.19 9.69 22.25 0.22 -0.97 16 30 C -0.20 -7.83 9.99 22.39 0.22 -7.61 16 31 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.12 4.90 5.64 -2.91 -0.02 4.88 16 33 H 0.14 3.45 8.06 -2.91 -0.02 3.43 16 34 H 0.07 1.51 8.08 -2.38 -0.02 1.49 16 35 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 36 H 0.41 6.45 7.88 -92.71 -0.73 5.72 16 37 H 0.08 0.73 7.56 -2.39 -0.02 0.71 16 38 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.73 7.22 -2.38 -0.02 0.71 16 40 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.08 0.59 7.56 -2.39 -0.02 0.58 16 43 H 0.42 2.18 8.25 -92.71 -0.76 1.41 16 44 H 0.41 3.69 8.93 -92.71 -0.83 2.86 16 45 H 0.08 1.38 8.10 -2.39 -0.02 1.36 16 46 H 0.05 1.15 8.06 -2.39 -0.02 1.13 16 47 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 48 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -77.79 389.47 0.86 -76.94 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -1.30 Total: 30.09 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: 4.20 Total: -23.49 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -3.77 Total: -81.05 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -0.31 Total: -46.08 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Total: -77.79 0.86 -76.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786874281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.628 kcal (2) G-P(sol) polarization free energy of solvation -77.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds