Wall clock time and date at job start Sat Apr 11 2020 07:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86794 * 120.00254 * 2 1 4 4 H 1.48498 * 109.47081 * 240.00078 * 3 2 1 5 5 H 1.48503 * 109.47051 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47451 * 119.99839 * 3 2 1 7 7 C 1.38651 * 119.99677 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00185 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00357 * 0.02562 * 7 2 1 10 10 C 1.35750 * 117.00382 * 185.05573 * 9 7 2 11 11 C 1.38875 * 120.06544 * 354.46230 * 10 9 7 12 12 C 1.38100 * 119.92965 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06887 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.93183 * 180.02562 * 13 12 11 15 15 N 1.46495 * 109.47042 * 89.99984 * 14 13 12 16 16 C 1.34773 * 120.00292 * 179.97438 * 15 14 13 17 17 O 1.21280 * 119.99853 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00262 * 180.02562 * 16 15 14 19 19 H 1.09004 * 109.47259 * 300.00023 * 18 16 15 20 20 C 1.53004 * 109.47195 * 60.00125 * 18 16 15 21 21 C 1.53002 * 109.47054 * 180.02562 * 20 18 16 22 22 C 1.52998 * 109.46936 * 299.99835 * 21 20 18 23 23 C 1.52994 * 109.47307 * 60.00545 * 22 21 20 24 24 H 1.08999 * 109.47367 * 59.99293 * 23 22 21 25 25 C 1.50702 * 109.47280 * 179.97438 * 23 22 21 26 26 N 1.34778 * 119.99868 * 299.99526 * 25 23 22 27 27 O 1.21275 * 119.99961 * 119.99783 * 25 23 22 28 28 C 1.53003 * 109.47245 * 180.02562 * 18 16 15 29 29 C 1.38296 * 120.13822 * 0.29559 * 13 12 11 30 30 C 1.38103 * 120.07016 * 359.45133 * 29 13 12 31 31 H 0.97005 * 119.99903 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.03947 * 359.97438 * 11 10 9 33 33 H 1.07998 * 119.96756 * 179.97438 * 12 11 10 34 34 H 1.09003 * 109.47051 * 330.00062 * 14 13 12 35 35 H 1.09004 * 109.47078 * 210.00173 * 14 13 12 36 36 H 0.97006 * 120.00176 * 0.02562 * 15 14 13 37 37 H 1.08994 * 109.46887 * 299.99886 * 20 18 16 38 38 H 1.08999 * 109.47183 * 60.00287 * 20 18 16 39 39 H 1.08999 * 109.46960 * 60.00066 * 21 20 18 40 40 H 1.09003 * 109.46577 * 180.02562 * 21 20 18 41 41 H 1.08999 * 109.47484 * 299.99910 * 22 21 20 42 42 H 1.09005 * 109.46635 * 180.02562 * 22 21 20 43 43 H 0.96995 * 119.99776 * 0.02562 * 26 25 23 44 44 H 0.96994 * 120.00104 * 179.97438 * 26 25 23 45 45 H 1.08999 * 109.47236 * 299.99776 * 28 18 16 46 46 H 1.09003 * 109.47016 * 59.99842 * 28 18 16 47 47 H 1.08001 * 119.97069 * 179.70340 * 29 13 12 48 48 H 1.07990 * 120.04067 * 180.27619 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6176 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2846 2.7464 -0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0698 -3.5046 0.1077 11 6 3.4570 -3.4395 0.0951 12 6 4.2021 -4.5971 0.2038 13 6 3.5683 -5.8204 0.3255 14 6 4.3844 -7.0817 0.4444 15 7 4.6550 -7.3567 1.8576 16 6 5.3733 -8.4422 2.2074 17 8 5.7960 -9.1910 1.3521 18 6 5.6511 -8.7255 3.6612 19 1 6.2049 -7.8925 4.0943 20 6 4.3277 -8.9015 4.4085 21 6 4.6098 -9.1885 5.8846 22 6 5.4382 -10.4691 6.0059 23 6 6.7616 -10.2930 5.2587 24 1 7.3152 -9.4598 5.6915 25 6 7.5779 -11.5542 5.3787 26 7 7.9477 -12.0045 6.5940 27 8 7.9021 -12.1638 4.3817 28 6 6.4798 -10.0059 3.7820 29 6 2.1870 -5.8890 0.3326 30 6 1.4362 -4.7345 0.2296 31 1 -0.4850 0.8401 -0.0004 32 1 3.9525 -2.4847 -0.0003 33 1 5.2809 -4.5473 0.1937 34 1 5.3271 -6.9560 -0.0883 35 1 3.8307 -7.9149 0.0115 36 1 4.3166 -6.7581 2.5418 37 1 3.7377 -7.9891 4.3224 38 1 3.7739 -9.7345 3.9755 39 1 5.1634 -8.3552 6.3174 40 1 3.6669 -9.3144 6.4169 41 1 4.8846 -11.3024 5.5731 42 1 5.6388 -10.6737 7.0576 43 1 7.6880 -11.5170 7.3914 44 1 8.4727 -12.8163 6.6713 45 1 5.9264 -10.8391 3.3488 46 1 7.4227 -9.8801 3.2496 47 1 1.6949 -6.8461 0.4230 48 1 0.3577 -4.7883 0.2398 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786874284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:39 Heat of formation + Delta-G solvation = -107.756220 kcal Electronic energy + Delta-G solvation = -29135.145277 eV Core-core repulsion = 24961.218653 eV Total energy + Delta-G solvation = -4173.926624 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.74063 -39.66485 -39.07112 -37.48378 -36.79441 -34.42877 -34.11731 -32.41144 -31.67375 -31.19159 -30.29769 -29.69316 -26.04037 -24.99505 -24.38877 -23.24679 -22.07159 -21.43297 -20.64830 -20.23626 -19.88989 -18.13860 -18.06015 -17.27948 -16.96207 -16.66563 -15.88871 -15.63518 -15.37685 -14.99231 -14.78653 -14.64868 -14.46281 -14.12507 -13.95667 -13.91381 -13.71697 -13.40147 -13.13356 -12.91831 -12.80301 -12.74412 -12.52322 -12.10337 -11.78172 -11.66193 -11.53092 -11.40503 -11.10952 -11.06071 -10.95627 -10.81040 -10.71771 -10.70629 -10.51880 -10.11802 -10.06250 -9.69426 -9.44829 -8.93749 -8.91957 -8.30467 -7.34211 -6.54424 -4.13488 2.05642 2.11102 2.29638 2.68327 3.06010 3.07851 3.09633 3.11571 3.42690 3.89014 4.20635 4.27432 4.30431 4.49568 4.65267 4.74884 4.83250 4.89997 4.92401 5.00271 5.05423 5.13437 5.17644 5.20592 5.30632 5.41778 5.55824 5.58705 5.61132 5.65086 5.76328 5.79388 5.81146 5.95101 5.98744 6.10449 6.15788 6.33269 6.38469 6.53564 6.58847 6.78698 6.92107 6.93840 7.12339 7.25748 7.33365 7.61664 7.70380 7.90068 7.90563 8.29700 8.90743 9.58815 10.62939 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.020727 B = 0.001741 C = 0.001706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.568117 B =16080.901443 C =16413.009086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.051 4.051 13 C -0.214 4.214 14 C 0.178 3.822 15 N -0.721 5.721 16 C 0.512 3.488 17 O -0.543 6.543 18 C -0.107 4.107 19 H 0.097 0.903 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.112 4.112 23 C -0.108 4.108 24 H 0.099 0.901 25 C 0.520 3.480 26 N -0.859 5.859 27 O -0.536 6.536 28 C -0.078 4.078 29 C -0.055 4.055 30 C -0.195 4.195 31 H 0.272 0.728 32 H 0.128 0.872 33 H 0.108 0.892 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.401 0.599 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.400 0.600 44 H 0.400 0.600 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.112 0.888 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.196 -17.267 16.128 26.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.105 3.895 11 C -0.256 4.256 12 C -0.070 4.070 13 C -0.215 4.215 14 C 0.056 3.944 15 N -0.373 5.373 16 C 0.298 3.702 17 O -0.420 6.420 18 C -0.128 4.128 19 H 0.115 0.885 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.149 4.149 23 C -0.130 4.130 24 H 0.117 0.883 25 C 0.305 3.695 26 N -0.422 5.422 27 O -0.412 6.412 28 C -0.117 4.117 29 C -0.073 4.073 30 C -0.215 4.215 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.236 0.764 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.229 0.771 44 H 0.230 0.770 45 H 0.097 0.903 46 H 0.096 0.904 47 H 0.130 0.870 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 11.162 -17.826 14.689 25.654 hybrid contribution 0.446 1.153 0.784 1.463 sum 11.607 -16.673 15.473 25.537 Atomic orbital electron populations 1.70028 1.05998 1.27979 1.45332 1.25314 0.95864 0.98924 0.96338 0.85765 0.78725 0.79620 0.79256 1.19431 1.20203 1.19436 1.21304 0.91835 0.80735 1.53135 0.88982 1.83977 1.34499 1.11556 1.77545 1.19439 0.90317 0.88055 0.91651 1.21157 0.93779 0.98950 1.11738 1.20645 0.98376 0.91639 0.96340 1.19216 0.93563 0.93624 1.15121 1.19976 0.98442 0.94815 0.81176 1.46361 1.54761 1.26783 1.09396 1.20568 0.77966 0.80774 0.90885 1.90712 1.51414 1.47716 1.52172 1.21354 0.98405 1.00160 0.92911 0.88479 1.21575 0.95574 1.02942 0.95118 1.21517 1.00287 0.97267 0.96236 1.21566 0.94526 0.99254 0.99595 1.21391 0.96624 0.95786 0.99182 0.88264 1.20697 0.79287 0.86500 0.83050 1.43917 1.58736 1.31008 1.08572 1.90783 1.55184 1.58617 1.36584 1.21134 1.01040 0.96587 0.92914 1.20530 0.92768 0.96807 0.97236 1.20217 0.99665 0.90251 1.11325 0.91824 0.85434 0.87417 0.91652 0.91605 0.76447 0.90844 0.91093 0.91284 0.90951 0.91115 0.91426 0.77130 0.76967 0.90306 0.90416 0.86979 0.86388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.45 13.67 55.48 0.76 -23.69 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 19.82 29.55 -169.99 -5.02 14.80 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.61 9.49 30.89 0.29 -10.32 16 8 H 0.09 2.28 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.76 9.76 0.05 0.00 -4.76 16 10 C 0.16 3.67 6.65 -39.11 -0.26 3.41 16 11 C -0.24 -4.84 9.17 -39.40 -0.36 -5.20 16 12 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.37 5.25 -104.57 -0.55 -3.91 16 14 C 0.18 2.48 5.80 -5.20 -0.03 2.45 16 15 N -0.72 -8.64 5.44 -61.47 -0.33 -8.98 16 16 C 0.51 6.48 7.15 -10.99 -0.08 6.40 16 17 O -0.54 -9.16 15.98 5.56 0.09 -9.07 16 18 C -0.11 -0.94 2.52 -91.77 -0.23 -1.17 16 19 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 20 C -0.11 -0.80 5.10 -26.73 -0.14 -0.94 16 21 C -0.12 -0.57 5.92 -26.73 -0.16 -0.73 16 22 C -0.11 -0.55 5.10 -26.74 -0.14 -0.69 16 23 C -0.11 -0.72 2.53 -91.74 -0.23 -0.96 16 24 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 25 C 0.52 4.44 7.43 -10.98 -0.08 4.36 16 26 N -0.86 -3.73 8.77 31.22 0.27 -3.46 16 27 O -0.54 -7.35 16.82 5.56 0.09 -7.26 16 28 C -0.08 -0.78 3.07 -26.70 -0.08 -0.87 16 29 C -0.05 -0.90 9.69 -39.61 -0.38 -1.29 16 30 C -0.20 -3.87 9.99 -39.39 -0.39 -4.27 16 31 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 32 H 0.13 2.62 5.64 -52.49 -0.30 2.33 16 33 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 34 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 35 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 36 H 0.40 4.16 7.88 -40.82 -0.32 3.84 16 37 H 0.07 0.49 7.56 -51.93 -0.39 0.10 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.19 7.56 -51.93 -0.39 -0.21 16 43 H 0.40 0.51 8.25 -40.82 -0.34 0.17 16 44 H 0.40 1.50 8.93 -40.82 -0.36 1.14 16 45 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 46 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 47 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 48 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 396.00 15.07 5.97 5.97 Total: -1.00 -34.80 396.00 -8.47 -43.27 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -6.99 Total: 7.15 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: -3.30 Total: -13.99 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: 0.70 Total: -36.12 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: 0.18 Total: -21.08 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.80 -8.47 -43.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786874284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.483 kcal (2) G-P(sol) polarization free energy of solvation -34.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds