Wall clock time and date at job start Sat Apr 11 2020 07:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35976 * 117.00020 * 2 1 4 4 C 1.38554 * 120.08491 * 0.03142 * 3 2 1 5 5 C 1.38241 * 120.01486 * 179.72201 * 4 3 2 6 6 C 1.38274 * 120.18028 * 0.50538 * 5 4 3 7 7 C 1.50703 * 119.91877 * 179.76829 * 6 5 4 8 8 C 1.38195 * 120.16429 * 359.48842 * 6 5 4 9 9 C 1.38720 * 119.98485 * 0.25832 * 8 6 5 10 10 N 1.40120 * 120.09204 * 180.02562 * 9 8 6 11 11 C 1.46768 * 124.35154 * 89.99708 * 10 9 8 12 12 C 1.54477 * 105.47585 * 197.01811 * 11 10 9 13 13 H 1.08998 * 110.97253 * 216.46697 * 12 11 10 14 14 C 1.50695 * 110.96780 * 92.70261 * 12 11 10 15 15 O 1.21275 * 120.00285 * 0.02562 * 14 12 11 16 16 N 1.34779 * 119.99769 * 180.02562 * 14 12 11 17 17 C 1.46501 * 120.00256 * 0.02562 * 16 14 12 18 18 C 1.46505 * 120.00043 * 180.02562 * 16 14 12 19 19 C 1.50698 * 109.47459 * 89.99638 * 18 16 14 20 20 H 1.08006 * 119.99363 * 0.02562 * 19 18 16 21 21 C 1.37868 * 120.00451 * 180.02562 * 19 18 16 22 22 N 1.31515 * 120.00076 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00342 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47300 * 89.99608 * 23 21 19 25 25 H 1.48499 * 109.47088 * 209.99753 * 23 21 19 26 26 H 1.48504 * 109.46782 * 329.99701 * 23 21 19 27 27 C 1.54628 * 101.76366 * 334.58484 * 12 11 10 28 28 C 1.34423 * 124.35028 * 269.69752 * 10 9 8 29 29 O 1.21296 * 124.94166 * 359.57652 * 28 10 9 30 30 H 1.09003 * 109.46839 * 299.99694 * 1 2 3 31 31 H 1.09000 * 109.47084 * 59.99005 * 1 2 3 32 32 H 1.08991 * 109.47158 * 179.97438 * 1 2 3 33 33 H 1.08005 * 119.99026 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.91164 * 180.24577 * 5 4 3 35 35 H 1.09002 * 109.47152 * 269.72150 * 7 6 5 36 36 H 1.09001 * 109.46980 * 149.72250 * 7 6 5 37 37 H 1.09004 * 109.47113 * 29.72231 * 7 6 5 38 38 H 1.08004 * 120.01256 * 180.23417 * 8 6 5 39 39 H 1.09000 * 110.24669 * 316.02175 * 11 10 9 40 40 H 1.08998 * 110.24243 * 77.93076 * 11 10 9 41 41 H 1.08997 * 109.46942 * 90.00254 * 17 16 14 42 42 H 1.09006 * 109.47126 * 210.00189 * 17 16 14 43 43 H 1.09005 * 109.46734 * 329.99834 * 17 16 14 44 44 H 1.08994 * 109.46983 * 209.99975 * 18 16 14 45 45 H 1.09002 * 109.47089 * 329.99735 * 18 16 14 46 46 H 0.96996 * 120.00606 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.48841 * 143.47459 * 27 12 11 48 48 H 1.09004 * 110.49090 * 265.98366 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2935 2.3747 0.0007 5 6 1.9226 3.6056 0.0065 6 6 3.3032 3.6807 0.0011 7 6 3.9829 5.0258 0.0022 8 6 4.0615 2.5253 0.0005 9 6 3.4373 1.2865 0.0000 10 7 4.2040 0.1136 0.0000 11 6 4.6566 -0.5799 1.2117 12 6 5.7918 -1.5199 0.7489 13 1 5.7697 -2.4595 1.3009 14 6 7.1349 -0.8498 0.8824 15 8 7.2077 0.2831 1.3091 16 7 8.2554 -1.5095 0.5274 17 6 8.1675 -2.8778 0.0114 18 6 9.5613 -0.8583 0.6577 19 6 10.1297 -1.1412 2.0244 20 1 9.5739 -1.7461 2.7257 21 6 11.3590 -0.6281 2.3795 22 7 12.0360 0.1080 1.5254 23 14 12.0639 -0.9794 4.0734 24 1 12.8746 -2.2227 4.0241 25 1 12.9230 0.1553 4.4971 26 1 10.9543 -1.1503 5.0455 27 6 5.4300 -1.7430 -0.7378 28 6 4.6145 -0.5242 -1.1098 29 8 4.3691 -0.1722 -2.2443 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 0.2148 2.3196 0.0008 34 1 1.3341 4.5112 0.0110 35 1 4.1471 5.3507 -1.0252 36 1 4.9410 4.9483 0.5162 37 1 3.3523 5.7511 0.5164 38 1 5.1398 2.5868 0.0002 39 1 5.0349 0.1388 1.9386 40 1 3.8392 -1.1575 1.6433 41 1 8.0585 -2.8509 -1.0728 42 1 9.0745 -3.4234 0.2719 43 1 7.3041 -3.3772 0.4512 44 1 10.2377 -1.2451 -0.1044 45 1 9.4452 0.2178 0.5282 46 1 12.9011 0.4688 1.7751 47 1 6.3329 -1.8013 -1.3456 48 1 4.8341 -2.6483 -0.8538 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057814224.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:59 Heat of formation + Delta-G solvation = -68.490395 kcal Electronic energy + Delta-G solvation = -31111.059155 eV Core-core repulsion = 26938.835225 eV Total energy + Delta-G solvation = -4172.223930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15528 -39.95480 -38.57051 -37.76351 -36.09936 -34.88214 -33.48187 -32.51254 -31.77821 -29.63373 -28.07484 -27.79368 -27.57464 -26.06023 -25.90301 -24.03132 -22.91342 -21.76073 -21.54520 -19.56695 -18.57924 -18.21172 -17.14286 -17.01707 -16.52257 -16.42587 -15.94153 -15.52020 -15.18923 -14.92280 -14.68486 -14.53157 -14.32127 -14.15531 -13.97280 -13.74612 -13.49694 -13.17515 -12.91651 -12.81754 -12.37547 -12.35631 -12.29305 -12.10917 -11.96817 -11.90899 -11.70536 -11.49225 -11.39301 -11.22813 -11.17456 -11.01522 -10.90557 -10.58988 -10.18154 -9.83976 -9.65550 -8.98487 -8.97108 -8.79662 -8.45736 -8.15009 -7.70127 -6.06296 -4.11497 1.09990 1.26781 2.66504 2.97202 3.10810 3.26079 3.28707 3.35646 3.39769 3.51272 3.81737 4.38607 4.41959 4.55967 4.60440 4.72283 4.82674 4.84059 4.89207 4.93824 5.03579 5.16722 5.20787 5.22612 5.27889 5.35733 5.46479 5.54079 5.57795 5.61738 5.67641 5.73967 5.82531 5.84697 5.90060 5.92651 6.06993 6.19346 6.20240 6.41270 6.57216 6.77842 7.00880 7.11373 7.27260 7.41085 7.48611 7.89437 8.20215 8.29995 8.34559 8.85585 9.01399 9.53670 11.01814 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.013849 B = 0.002953 C = 0.002668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.351656 B = 9479.536519 C =10491.732959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.309 6.309 3 C 0.128 3.872 4 C -0.204 4.204 5 C -0.077 4.077 6 C -0.116 4.116 7 C -0.110 4.110 8 C -0.064 4.064 9 C 0.122 3.878 10 N -0.563 5.563 11 C 0.122 3.878 12 C -0.125 4.125 13 H 0.121 0.879 14 C 0.511 3.489 15 O -0.533 6.533 16 N -0.598 5.598 17 C 0.080 3.920 18 C 0.246 3.754 19 C -0.527 4.527 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.280 1.280 25 H -0.285 1.285 26 H -0.274 1.274 27 C -0.142 4.142 28 C 0.528 3.472 29 O -0.527 6.527 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.138 0.862 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.044 0.956 46 H 0.264 0.736 47 H 0.110 0.890 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.050 -0.581 -2.628 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.081 3.919 4 C -0.223 4.223 5 C -0.095 4.095 6 C -0.117 4.117 7 C -0.167 4.167 8 C -0.083 4.083 9 C 0.032 3.968 10 N -0.293 5.293 11 C 0.000 4.000 12 C -0.147 4.147 13 H 0.139 0.861 14 C 0.296 3.704 15 O -0.410 6.410 16 N -0.330 5.330 17 C -0.064 4.064 18 C 0.127 3.873 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.726 3.274 24 H -0.206 1.206 25 H -0.211 1.211 26 H -0.199 1.199 27 C -0.183 4.183 28 C 0.316 3.684 29 O -0.403 6.403 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.156 0.844 39 H 0.117 0.883 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.128 0.872 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -22.869 0.146 -3.034 23.070 hybrid contribution 0.257 -0.254 1.007 1.070 sum -22.612 -0.108 -2.027 22.703 Atomic orbital electron populations 1.23055 0.78633 1.03887 1.01207 1.86135 1.21062 1.26483 1.88482 1.19263 0.91268 0.84714 0.96668 1.21070 0.99837 0.91871 1.09501 1.20856 0.93872 0.96974 0.97838 1.19744 0.93424 0.95399 1.03117 1.20740 1.00681 0.92845 1.02405 1.21254 1.00922 0.90079 0.96068 1.16619 0.86107 0.86047 1.08073 1.45290 1.52264 1.23831 1.07900 1.22073 0.94997 0.95588 0.87340 1.22363 0.94346 1.00858 0.97134 0.86112 1.19889 0.84956 0.86610 0.78914 1.90669 1.86470 1.18370 1.45486 1.48112 1.08370 1.14327 1.62146 1.21744 1.02746 0.84153 0.97790 1.19311 0.76743 0.94349 0.96944 1.21412 1.03075 1.32475 0.99605 0.92413 1.24940 0.96831 0.94892 0.97452 1.69931 1.13974 1.34176 1.35221 0.86495 0.78937 0.77785 0.84185 1.20645 1.21100 1.19877 1.22362 1.01938 0.97938 0.96036 1.20885 0.78889 0.84506 0.84086 1.90705 1.58687 1.69932 1.20991 0.92681 0.92732 0.88301 0.85135 0.85547 0.91233 0.91135 0.91611 0.84392 0.88312 0.90373 0.93504 0.90600 0.92232 0.94925 0.93835 0.92680 0.87162 0.86844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.87 10.24 -19.67 -0.20 -4.07 16 3 C 0.13 1.73 6.70 -39.07 -0.26 1.47 16 4 C -0.20 -2.23 9.04 -39.46 -0.36 -2.58 16 5 C -0.08 -0.82 9.69 -39.57 -0.38 -1.20 16 6 C -0.12 -1.43 5.88 -104.62 -0.62 -2.04 16 7 C -0.11 -1.10 10.01 36.01 0.36 -0.73 16 8 C -0.06 -0.97 9.61 -39.42 -0.38 -1.34 16 9 C 0.12 1.90 5.40 -83.49 -0.45 1.45 16 10 N -0.56 -8.89 2.70 -112.12 -0.30 -9.20 16 11 C 0.12 1.69 6.61 -3.12 -0.02 1.67 16 12 C -0.13 -1.72 2.55 -90.14 -0.23 -1.95 16 13 H 0.12 1.27 7.25 -51.93 -0.38 0.89 16 14 C 0.51 10.05 7.00 -10.99 -0.08 9.97 16 15 O -0.53 -12.76 15.11 5.56 0.08 -12.68 16 16 N -0.60 -12.13 2.85 -182.95 -0.52 -12.66 16 17 C 0.08 1.17 9.18 59.85 0.55 1.72 16 18 C 0.25 6.31 5.16 -5.19 -0.03 6.28 16 19 C -0.53 -14.64 9.39 -34.44 -0.32 -14.96 16 20 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -26.40 13.29 55.43 0.74 -25.67 16 23 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 27 C -0.14 -1.86 5.78 -26.74 -0.15 -2.01 16 28 C 0.53 8.92 7.99 -10.86 -0.09 8.84 16 29 O -0.53 -10.71 17.71 5.54 0.10 -10.61 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.05 0.37 7.66 -51.93 -0.40 -0.02 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.13 1.05 6.30 -52.48 -0.33 0.72 16 34 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 37 H 0.06 0.52 8.08 -51.93 -0.42 0.10 16 38 H 0.14 2.26 8.06 -52.48 -0.42 1.84 16 39 H 0.10 1.55 7.02 -51.93 -0.36 1.19 16 40 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.05 0.60 7.27 -51.93 -0.38 0.22 16 42 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 43 H 0.06 0.67 6.28 -51.93 -0.33 0.35 16 44 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 45 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.11 1.49 6.21 -51.93 -0.32 1.17 16 48 H 0.11 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 398.18 15.07 6.00 6.00 Total: -1.00 -36.90 398.18 -7.73 -44.62 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.04 Total: 0.32 kcal Atomic # 6 Polarization: 8.96 SS G_CDS: -1.56 Total: 7.39 kcal Atomic # 7 Polarization: -47.43 SS G_CDS: -0.09 Total: -47.52 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.02 Total: -27.36 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -36.90 -7.73 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057814224.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.869 kcal (2) G-P(sol) polarization free energy of solvation -36.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds