Wall clock time and date at job start Sat Apr 11 2020 07:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 110.01794 * 2 1 4 4 C 1.54273 * 110.03417 * 238.55555 * 2 1 3 5 5 C 1.54888 * 104.19545 * 264.32978 * 4 2 1 6 6 C 1.54962 * 102.77753 * 322.07979 * 5 4 2 7 7 C 1.53881 * 110.03037 * 121.39532 * 2 1 3 8 8 H 1.09001 * 110.03186 * 359.94548 * 7 2 1 9 9 N 1.46504 * 110.02351 * 238.56926 * 7 2 1 10 10 C 1.34780 * 119.99525 * 155.69376 * 9 7 2 11 11 O 1.21362 * 119.99859 * 359.97438 * 10 9 7 12 12 C 1.49349 * 120.00078 * 179.97438 * 10 9 7 13 13 O 1.21377 * 119.99917 * 359.97438 * 12 10 9 14 14 N 1.34777 * 120.00111 * 179.97438 * 12 10 9 15 15 C 1.39728 * 120.00054 * 174.54452 * 14 12 10 16 16 C 1.39022 * 120.04281 * 325.26012 * 15 14 12 17 17 C 1.38135 * 120.06376 * 180.02562 * 16 15 14 18 18 C 1.38182 * 120.14108 * 0.02562 * 17 16 15 19 19 C 1.38922 * 120.08598 * 359.95759 * 18 17 16 20 20 O 1.35749 * 120.03276 * 180.02562 * 19 18 17 21 21 C 1.34826 * 117.00115 * 185.59500 * 20 19 18 22 22 H 1.08004 * 119.99862 * 5.35217 * 21 20 19 23 23 C 1.38651 * 120.00108 * 185.35654 * 21 20 19 24 24 N 1.31552 * 120.00026 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99867 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47324 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.46936 * 120.00000 * 25 23 21 28 28 H 1.48501 * 109.47208 * 239.99454 * 25 23 21 29 29 C 1.38761 * 119.93644 * 0.04078 * 19 18 17 30 30 H 1.08996 * 109.47139 * 298.60791 * 1 2 3 31 31 H 1.08998 * 109.46822 * 58.61499 * 1 2 3 32 32 H 1.09006 * 109.47324 * 178.60650 * 1 2 3 33 33 H 1.09006 * 109.47217 * 181.39283 * 3 2 1 34 34 H 1.08998 * 109.46895 * 301.38876 * 3 2 1 35 35 H 1.08999 * 109.47111 * 61.39256 * 3 2 1 36 36 H 1.09000 * 110.48013 * 23.00664 * 4 2 1 37 37 H 1.08999 * 110.48821 * 145.64680 * 4 2 1 38 38 H 1.09000 * 110.76231 * 80.37238 * 5 4 2 39 39 H 1.09000 * 110.75222 * 203.55589 * 5 4 2 40 40 H 1.09001 * 110.48160 * 279.23727 * 6 5 4 41 41 H 1.09004 * 110.52970 * 156.56655 * 6 5 4 42 42 H 0.96992 * 120.00685 * 335.68230 * 9 7 2 43 43 H 0.96996 * 120.00394 * 354.54903 * 14 12 10 44 44 H 1.07999 * 119.96580 * 359.97438 * 16 15 14 45 45 H 1.08003 * 119.93256 * 180.02562 * 17 16 15 46 46 H 1.08008 * 119.95920 * 179.97438 * 18 17 16 47 47 H 0.97005 * 120.00003 * 180.02562 * 24 23 21 48 48 H 1.07992 * 120.07313 * 180.25463 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0537 1.4375 0.0000 4 6 2.0585 -0.7561 -1.2365 5 6 2.3280 -2.1905 -0.7181 6 6 2.8871 -1.9411 0.7054 7 6 2.0571 -0.7531 1.2341 8 1 1.2228 -1.1178 1.8334 9 7 2.9033 0.1320 2.0383 10 6 3.0712 -0.1086 3.3538 11 8 2.5210 -1.0581 3.8721 12 6 3.9342 0.7933 4.1737 13 8 4.4848 1.7427 3.6553 14 7 4.1017 0.5530 5.4893 15 6 4.9972 1.3266 6.2323 16 6 6.1703 1.7885 5.6465 17 6 7.0561 2.5528 6.3808 18 6 6.7799 2.8602 7.6993 19 6 5.6093 2.4021 8.2907 20 8 5.3387 2.7051 9.5860 21 6 4.2462 2.1347 10.1328 22 1 3.6809 1.4044 9.5729 23 6 3.8484 2.4858 11.4137 24 7 4.5373 3.3751 12.0959 25 14 2.3352 1.6950 12.1715 26 1 1.7429 0.7344 11.2064 27 1 2.7212 0.9763 13.4124 28 1 1.3383 2.7461 12.4981 29 6 4.7170 1.6341 7.5562 30 1 -0.3633 0.4920 0.9022 31 1 -0.3633 0.5352 -0.8773 32 1 -0.3634 -1.0274 -0.0250 33 1 3.1435 1.4272 -0.0250 34 1 1.6752 1.9621 -0.8773 35 1 1.7158 1.9473 0.9022 36 1 1.3061 -0.7705 -2.0251 37 1 2.9812 -0.3009 -1.5965 38 1 1.4031 -2.7656 -0.6739 39 1 3.0651 -2.6949 -1.3430 40 1 3.9438 -1.6777 0.6594 41 1 2.7390 -2.8195 1.3337 42 1 3.3428 0.8910 1.6242 43 1 3.6007 -0.1569 5.9203 44 1 6.3896 1.5488 4.6165 45 1 7.9667 2.9109 5.9234 46 1 7.4748 3.4577 8.2709 47 1 4.2592 3.6204 12.9922 48 1 3.8044 1.2802 8.0125 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078277056.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:17 Heat of formation + Delta-G solvation = -93.381823 kcal Electronic energy + Delta-G solvation = -29881.843938 eV Core-core repulsion = 25708.540635 eV Total energy + Delta-G solvation = -4173.303303 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.27921 -41.15313 -40.35001 -39.28836 -38.20117 -36.02941 -34.83159 -34.24840 -33.21419 -31.17020 -30.44516 -29.14459 -28.35083 -27.38854 -26.27398 -25.10266 -23.57205 -23.06323 -21.81207 -21.30651 -20.55253 -19.75802 -19.58773 -18.83415 -17.99066 -17.19542 -17.06568 -16.99239 -16.74126 -16.18808 -16.06941 -15.90207 -15.62165 -15.57777 -15.33642 -14.95347 -14.60671 -14.45859 -14.22331 -14.00342 -13.74909 -13.61251 -13.35411 -13.26257 -13.08951 -12.96954 -12.72510 -12.58090 -12.48605 -12.43367 -12.11018 -12.02644 -11.88097 -11.61484 -11.47296 -11.45891 -11.40044 -11.38367 -10.83419 -10.74151 -10.30277 -9.45333 -8.96387 -8.48494 -6.16942 -0.07734 0.57139 0.68875 1.14842 1.35373 1.42979 1.52941 1.98280 2.16257 2.46651 2.79671 3.12879 3.23301 3.40825 3.45857 3.58250 3.81011 4.06859 4.26096 4.26746 4.31567 4.32727 4.35520 4.37742 4.45061 4.56296 4.57868 4.69952 4.76427 4.79879 4.90857 4.94709 4.98086 5.01642 5.08867 5.10390 5.17418 5.21844 5.24136 5.29595 5.31977 5.35394 5.39339 5.48860 5.59363 5.62691 5.84561 5.99482 6.10750 6.22151 6.58161 6.78179 6.96195 7.74307 8.74380 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.015864 B = 0.002214 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.604903 B =12646.091284 C =13673.255353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.072 4.072 3 C -0.152 4.152 4 C -0.110 4.110 5 C -0.118 4.118 6 C -0.136 4.136 7 C 0.140 3.860 8 H 0.084 0.916 9 N -0.680 5.680 10 C 0.515 3.485 11 O -0.537 6.537 12 C 0.506 3.494 13 O -0.515 6.515 14 N -0.636 5.636 15 C 0.178 3.822 16 C -0.193 4.193 17 C -0.047 4.047 18 C -0.205 4.205 19 C 0.134 3.866 20 O -0.223 6.223 21 C -0.413 4.413 22 H 0.101 0.899 23 C -0.020 4.020 24 N -0.917 5.917 25 Si 1.016 2.984 26 H -0.252 1.252 27 H -0.267 1.267 28 H -0.269 1.269 29 C -0.256 4.256 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.078 0.922 35 H 0.050 0.950 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.420 0.580 43 H 0.426 0.574 44 H 0.136 0.864 45 H 0.161 0.839 46 H 0.124 0.876 47 H 0.273 0.727 48 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.197 -9.755 -28.925 31.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.072 4.072 3 C -0.209 4.209 4 C -0.148 4.148 5 C -0.156 4.156 6 C -0.175 4.175 7 C 0.036 3.964 8 H 0.102 0.898 9 N -0.336 5.336 10 C 0.295 3.705 11 O -0.415 6.415 12 C 0.289 3.711 13 O -0.390 6.390 14 N -0.282 5.282 15 C 0.084 3.916 16 C -0.214 4.214 17 C -0.066 4.066 18 C -0.225 4.225 19 C 0.083 3.917 20 O -0.129 6.129 21 C -0.489 4.489 22 H 0.118 0.882 23 C -0.218 4.218 24 N -0.554 5.554 25 Si 0.835 3.165 26 H -0.176 1.176 27 H -0.192 1.192 28 H -0.194 1.194 29 C -0.277 4.277 30 H 0.065 0.935 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.261 0.739 43 H 0.265 0.735 44 H 0.154 0.846 45 H 0.179 0.821 46 H 0.142 0.858 47 H 0.082 0.918 48 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.115 -9.535 -28.636 30.795 hybrid contribution -0.598 -0.066 1.162 1.309 sum -6.713 -9.600 -27.473 29.867 Atomic orbital electron populations 1.21910 0.92898 1.02528 1.02262 1.21427 0.96698 0.95512 0.93578 1.21960 1.01109 0.95033 1.02822 1.22497 1.01764 0.94504 0.96016 1.22457 1.01543 0.97290 0.94268 1.22800 0.99749 0.97137 0.97783 1.22087 0.92786 0.89831 0.91681 0.89836 1.46235 1.48675 1.31785 1.06872 1.19746 0.81867 0.84786 0.84112 1.90771 1.48237 1.30205 1.72271 1.20466 0.82449 0.85335 0.82895 1.90768 1.47867 1.28882 1.71526 1.43130 1.41435 1.35217 1.08433 1.17431 0.89769 0.94447 0.89958 1.20865 0.93927 1.05392 1.01190 1.20955 0.99142 0.94991 0.91497 1.20563 0.97001 1.07999 0.96920 1.19612 0.94152 0.93226 0.84734 1.83984 1.44515 1.63668 1.20740 1.21806 1.04617 1.22822 0.99617 0.88180 1.26539 1.02341 0.97071 0.95860 1.70177 1.40718 1.32256 1.12297 0.84564 0.75441 0.78042 0.78409 1.17557 1.19241 1.19446 1.20852 1.02869 1.08986 0.95037 0.93529 0.90798 0.91761 0.91845 0.90319 0.93092 0.89703 0.90652 0.90661 0.90137 0.91216 0.91850 0.73852 0.73548 0.84620 0.82110 0.85801 0.91767 0.85585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.14 71.98 0.59 -0.80 16 2 C -0.07 -0.77 0.94 -51.45 -0.05 -0.81 16 3 C -0.15 -1.63 7.04 71.98 0.51 -1.12 16 4 C -0.11 -0.85 5.90 31.67 0.19 -0.67 16 5 C -0.12 -1.05 6.91 31.91 0.22 -0.83 16 6 C -0.14 -1.89 6.54 31.69 0.21 -1.69 16 7 C 0.14 2.18 2.87 45.72 0.13 2.31 16 8 H 0.08 1.57 7.12 -2.39 -0.02 1.56 16 9 N -0.68 -12.89 4.48 -440.51 -1.97 -14.87 16 10 C 0.52 12.99 7.88 87.24 0.69 13.68 16 11 O -0.54 -15.61 16.15 -3.28 -0.05 -15.67 16 12 C 0.51 14.74 7.61 87.24 0.66 15.41 16 13 O -0.52 -16.32 14.26 -3.33 -0.05 -16.37 16 14 N -0.64 -19.93 5.32 -304.88 -1.62 -21.55 16 15 C 0.18 6.63 6.24 38.20 0.24 6.87 16 16 C -0.19 -6.73 8.65 22.43 0.19 -6.54 16 17 C -0.05 -1.62 10.03 22.23 0.22 -1.39 16 18 C -0.21 -8.59 9.99 22.42 0.22 -8.36 16 19 C 0.13 6.63 6.64 22.56 0.15 6.78 16 20 O -0.22 -13.22 9.76 -22.69 -0.22 -13.44 16 21 C -0.41 -23.74 9.44 67.92 0.64 -23.10 16 22 H 0.10 5.30 5.29 -2.91 -0.02 5.29 16 23 C -0.02 -1.13 5.49 84.83 0.47 -0.67 16 24 N -0.92 -55.74 13.67 21.61 0.30 -55.44 16 25 Si 1.02 42.72 29.55 68.60 2.03 44.75 16 26 H -0.25 -9.84 7.11 99.48 0.71 -9.13 16 27 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 28 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 29 C -0.26 -11.26 9.05 22.52 0.20 -11.06 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.06 0.64 6.91 -2.38 -0.02 0.63 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.05 0.69 7.72 -2.39 -0.02 0.67 16 36 H 0.08 0.47 7.84 -2.39 -0.02 0.45 16 37 H 0.07 0.55 7.84 -2.39 -0.02 0.53 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.07 1.01 8.05 -2.39 -0.02 1.00 16 41 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 42 H 0.42 7.13 5.26 -92.71 -0.49 6.64 16 43 H 0.43 12.13 8.30 -92.71 -0.77 11.36 16 44 H 0.14 4.31 6.52 -2.91 -0.02 4.29 16 45 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 46 H 0.12 4.99 8.06 -2.91 -0.02 4.97 16 47 H 0.27 15.18 8.31 -92.70 -0.77 14.41 16 48 H 0.13 5.59 5.71 -2.91 -0.02 5.58 16 Total: -1.00 -71.71 391.86 3.64 -68.07 By element: Atomic # 1 Polarization: 36.75 SS G_CDS: -0.25 Total: 36.50 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: 5.48 Total: -11.99 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -3.30 Total: -91.86 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -0.32 Total: -45.47 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -71.71 3.64 -68.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078277056.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.315 kcal (2) G-P(sol) polarization free energy of solvation -71.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds