Wall clock time and date at job start Sat Apr 11 2020 07:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35960 * 117.00231 * 2 1 4 4 C 1.38550 * 120.08323 * 0.02562 * 3 2 1 5 5 C 1.38243 * 120.01900 * 179.97438 * 4 3 2 6 6 C 1.50692 * 119.90492 * 179.97438 * 5 4 3 7 7 C 1.38300 * 120.19110 * 0.02562 * 5 4 3 8 8 C 1.38165 * 120.17484 * 359.69985 * 7 5 4 9 9 C 1.38797 * 119.98021 * 0.55742 * 8 7 5 10 10 N 1.39875 * 120.09847 * 179.74739 * 9 8 7 11 11 C 1.34777 * 120.00045 * 33.03358 * 10 9 8 12 12 O 1.21393 * 120.00208 * 355.45870 * 11 10 9 13 13 C 1.49339 * 119.99891 * 175.45620 * 11 10 9 14 14 O 1.21358 * 119.99683 * 5.55847 * 13 11 10 15 15 N 1.34777 * 119.99525 * 185.56343 * 13 11 10 16 16 C 1.46505 * 119.99499 * 185.06171 * 15 13 11 17 17 C 1.50692 * 109.46972 * 269.72349 * 16 15 13 18 18 H 1.07996 * 120.00245 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00189 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00483 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 119.99749 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47071 * 89.99890 * 21 19 17 23 23 H 1.48502 * 109.47007 * 210.00439 * 21 19 17 24 24 H 1.48496 * 109.46947 * 330.00093 * 21 19 17 25 25 C 1.46497 * 120.00548 * 4.78125 * 15 13 11 26 26 C 1.53002 * 109.47076 * 276.17813 * 25 15 13 27 27 C 1.53007 * 117.49607 * 243.62112 * 26 25 15 28 28 C 1.52995 * 117.49908 * 174.99995 * 26 25 15 29 29 H 1.08999 * 109.47310 * 299.99883 * 1 2 3 30 30 H 1.08998 * 109.47282 * 60.00286 * 1 2 3 31 31 H 1.09009 * 109.47354 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99064 * 359.95445 * 4 3 2 33 33 H 1.09001 * 109.47555 * 89.99797 * 6 5 4 34 34 H 1.08999 * 109.47195 * 209.99867 * 6 5 4 35 35 H 1.09006 * 109.46963 * 329.99998 * 6 5 4 36 36 H 1.07999 * 119.91098 * 179.97438 * 7 5 4 37 37 H 1.07998 * 120.01017 * 180.29730 * 8 7 5 38 38 H 0.97004 * 120.00050 * 213.04005 * 10 9 8 39 39 H 1.09000 * 109.47056 * 29.72164 * 16 15 13 40 40 H 1.08999 * 109.46994 * 149.72075 * 16 15 13 41 41 H 0.96997 * 120.00275 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.46888 * 36.17205 * 25 15 13 43 43 H 1.09001 * 109.47049 * 156.17641 * 25 15 13 44 44 H 1.08997 * 115.55149 * 29.32424 * 26 25 15 45 45 H 1.09003 * 117.49889 * 359.97438 * 27 26 25 46 46 H 1.08994 * 117.50005 * 145.02158 * 27 26 25 47 47 H 1.08998 * 117.50247 * 214.97450 * 28 26 25 48 48 H 1.09004 * 117.50183 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2934 2.3745 0.0005 5 6 1.9224 3.6055 0.0011 6 6 1.1011 4.8689 0.0011 7 6 3.3034 3.6809 0.0005 8 6 4.0619 2.5261 0.0057 9 6 3.4379 1.2864 -0.0002 10 7 4.2034 0.1157 -0.0003 11 6 5.3886 0.0855 0.6407 12 8 5.8304 1.0961 1.1477 13 6 6.1584 -1.1913 0.7273 14 8 5.7678 -2.1765 0.1360 15 7 7.2866 -1.2494 1.4622 16 6 8.1011 -2.4671 1.4588 17 6 7.6411 -3.3822 2.5641 18 1 6.8241 -3.0862 3.2053 19 6 8.2639 -4.5970 2.7575 20 7 7.8628 -5.3954 3.7225 21 14 9.6777 -5.1088 1.6488 22 1 10.9597 -4.6393 2.2329 23 1 9.7011 -6.5887 1.5279 24 1 9.4958 -4.5051 0.3043 25 6 7.7018 -0.0927 2.2597 26 6 8.4735 0.8872 1.3735 27 6 9.9429 1.1422 1.7155 28 6 8.8941 2.2207 1.9945 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2148 2.3194 0.0002 33 1 0.9026 5.1733 1.0287 34 1 1.6494 5.6588 -0.5123 35 1 0.1570 4.6885 -0.5132 36 1 3.7901 4.6450 0.0005 37 1 5.1401 2.5881 0.0101 38 1 3.8814 -0.6744 -0.4618 39 1 7.9936 -2.9734 0.4995 40 1 9.1474 -2.2049 1.6159 41 1 8.3008 -6.2502 3.8583 42 1 6.8207 0.4027 2.6673 43 1 8.3421 -0.4256 3.0766 44 1 8.1941 0.8885 0.3200 45 1 10.3597 0.6123 2.5720 46 1 10.6305 1.3114 0.8868 47 1 8.8917 3.0993 1.3495 48 1 8.6207 2.4001 3.0343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132581631.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:23 Heat of formation + Delta-G solvation = -34.879516 kcal Electronic energy + Delta-G solvation = -30780.191313 eV Core-core repulsion = 26609.424860 eV Total energy + Delta-G solvation = -4170.766453 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.06395 -39.97687 -38.29536 -37.50624 -37.22665 -35.33415 -34.39119 -32.46404 -31.63172 -30.29172 -28.77322 -28.03883 -26.87765 -26.16802 -24.21340 -22.80175 -22.14885 -21.96752 -21.10843 -20.62315 -19.33362 -18.13161 -17.49648 -17.13526 -16.94430 -16.33336 -16.02269 -15.79982 -15.56345 -15.17157 -14.66404 -14.48277 -14.25974 -14.20606 -13.97115 -13.85693 -13.75449 -13.40354 -13.15123 -12.63781 -12.44799 -12.39180 -12.32081 -12.19011 -11.76923 -11.68644 -11.46316 -11.38696 -11.24030 -11.15820 -10.99480 -10.83638 -10.59595 -10.28796 -10.22732 -10.00717 -9.58558 -9.54540 -8.87731 -8.67859 -8.61757 -7.93690 -7.80886 -6.10812 -4.10594 1.02673 1.27463 1.93002 2.67914 3.05976 3.26463 3.34708 3.37720 3.51628 3.76104 3.88355 4.17363 4.37562 4.53933 4.64085 4.69547 4.84872 4.92781 4.94156 5.08600 5.10910 5.21593 5.22791 5.28255 5.33285 5.36305 5.37415 5.43693 5.59306 5.72609 5.73557 5.86211 5.96206 6.02839 6.09478 6.12717 6.17979 6.35744 6.37037 6.43218 6.55096 6.61868 6.69156 6.84666 7.09140 7.20293 7.29955 7.54584 7.86856 8.10123 8.38925 8.62267 8.92641 9.47912 11.02344 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003142 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.534866 B = 8910.299969 C =10665.667408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.314 6.314 3 C 0.108 3.892 4 C -0.193 4.193 5 C -0.067 4.067 6 C -0.112 4.112 7 C -0.138 4.138 8 C -0.082 4.082 9 C 0.116 3.884 10 N -0.641 5.641 11 C 0.506 3.494 12 O -0.496 6.496 13 C 0.499 3.501 14 O -0.518 6.518 15 N -0.553 5.553 16 C 0.216 3.784 17 C -0.531 4.531 18 H 0.076 0.924 19 C 0.075 3.925 20 N -0.895 5.895 21 Si 0.873 3.127 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.263 1.263 25 C 0.139 3.861 26 C -0.141 4.141 27 C -0.190 4.190 28 C -0.168 4.168 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.152 0.848 38 H 0.424 0.576 39 H 0.043 0.957 40 H 0.034 0.966 41 H 0.265 0.735 42 H 0.094 0.906 43 H 0.082 0.918 44 H 0.097 0.903 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.164 20.155 -8.322 24.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.227 6.227 3 C 0.061 3.939 4 C -0.212 4.212 5 C -0.068 4.068 6 C -0.169 4.169 7 C -0.157 4.157 8 C -0.102 4.102 9 C 0.021 3.979 10 N -0.288 5.288 11 C 0.289 3.711 12 O -0.370 6.370 13 C 0.280 3.720 14 O -0.394 6.394 15 N -0.283 5.283 16 C 0.096 3.904 17 C -0.569 4.569 18 H 0.094 0.906 19 C -0.128 4.128 20 N -0.533 5.533 21 Si 0.700 3.300 22 H -0.200 1.200 23 H -0.209 1.209 24 H -0.188 1.188 25 C 0.016 3.984 26 C -0.160 4.160 27 C -0.227 4.227 28 C -0.206 4.206 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.169 0.831 38 H 0.262 0.738 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.075 0.925 42 H 0.112 0.888 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.113 0.887 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -10.868 19.874 -8.145 24.071 hybrid contribution 0.276 -0.704 -0.611 0.972 sum -10.592 19.170 -8.756 23.587 Atomic orbital electron populations 1.23059 0.78135 1.04155 1.01171 1.86094 1.21570 1.26235 1.88834 1.18791 0.90442 0.85061 0.99644 1.20871 0.99659 0.91194 1.09506 1.19688 0.94015 0.94427 0.98632 1.20771 0.99152 0.94577 1.02364 1.20853 0.92800 0.98253 1.03814 1.21263 1.01695 0.89556 0.97699 1.17110 0.86737 0.87111 1.06927 1.43040 1.19292 1.14183 1.52262 1.20795 0.81658 0.90392 0.78245 1.90711 1.67269 1.35035 1.43966 1.19582 0.82735 0.87474 0.82247 1.90754 1.66989 1.35878 1.45822 1.47794 1.22010 1.15910 1.42583 1.19847 0.89807 0.81637 0.99126 1.21267 1.19281 1.01747 1.14636 0.90570 1.24830 0.97000 0.95952 0.95022 1.69886 1.41675 1.10608 1.31121 0.86884 0.82797 0.78396 0.81920 1.19974 1.20882 1.18778 1.21393 0.99986 0.84609 0.92458 1.22559 0.95720 0.97601 1.00126 1.23104 0.92448 1.03707 1.03411 1.22777 1.03640 0.92534 1.01644 0.92640 0.92708 0.88039 0.85188 0.91093 0.91371 0.91741 0.85566 0.83091 0.73760 0.93912 0.94787 0.92472 0.88818 0.89958 0.88497 0.88676 0.89445 0.89421 0.88965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.23 16 2 O -0.31 -3.88 10.03 -19.62 -0.20 -4.08 16 3 C 0.11 1.36 6.70 -39.05 -0.26 1.10 16 4 C -0.19 -1.99 8.69 -39.46 -0.34 -2.33 16 5 C -0.07 -0.65 5.88 -104.60 -0.62 -1.27 16 6 C -0.11 -0.74 10.01 36.00 0.36 -0.38 16 7 C -0.14 -1.47 9.69 -39.59 -0.38 -1.86 16 8 C -0.08 -1.06 8.71 -39.40 -0.34 -1.41 16 9 C 0.12 1.63 6.35 -83.56 -0.53 1.10 16 10 N -0.64 -9.95 5.19 -10.19 -0.05 -10.00 16 11 C 0.51 8.82 7.55 -11.64 -0.09 8.73 16 12 O -0.50 -8.36 9.29 5.46 0.05 -8.31 16 13 C 0.50 10.42 7.68 -11.64 -0.09 10.33 16 14 O -0.52 -12.22 16.11 5.49 0.09 -12.14 16 15 N -0.55 -11.72 2.47 -175.62 -0.43 -12.15 16 16 C 0.22 5.23 4.17 -5.19 -0.02 5.21 16 17 C -0.53 -15.15 9.94 -34.44 -0.34 -15.49 16 18 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 19 C 0.07 2.16 5.47 -17.82 -0.10 2.06 16 20 N -0.89 -27.43 13.96 55.43 0.77 -26.65 16 21 Si 0.87 21.26 27.47 -169.99 -4.67 16.59 16 22 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 25 C 0.14 2.47 5.26 -4.04 -0.02 2.45 16 26 C -0.14 -2.15 4.44 -90.62 -0.40 -2.55 16 27 C -0.19 -2.55 10.18 -26.73 -0.27 -2.82 16 28 C -0.17 -2.15 10.25 -26.73 -0.27 -2.42 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 30 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.10 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.13 1.02 6.30 -52.49 -0.33 0.69 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 36 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.15 2.05 6.07 -52.49 -0.32 1.73 16 38 H 0.42 6.47 8.01 -40.82 -0.33 6.14 16 39 H 0.04 1.10 6.55 -51.93 -0.34 0.76 16 40 H 0.03 0.78 7.50 -51.93 -0.39 0.39 16 41 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 42 H 0.09 1.67 5.97 -51.93 -0.31 1.36 16 43 H 0.08 1.49 7.76 -51.93 -0.40 1.08 16 44 H 0.10 1.56 7.92 -51.93 -0.41 1.14 16 45 H 0.09 1.28 8.03 -51.93 -0.42 0.87 16 46 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 48 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 396.77 15.07 5.98 5.98 Total: -1.00 -33.15 396.77 -8.20 -41.35 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -7.01 Total: 7.72 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -2.73 Total: 1.69 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: 0.29 Total: -48.81 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.06 Total: -24.52 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -4.67 Total: 16.59 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.15 -8.20 -41.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132581631.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.470 kcal (2) G-P(sol) polarization free energy of solvation -33.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds