Wall clock time and date at job start Sat Apr 11 2020 07:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35960 * 117.00231 * 2 1 4 4 C 1.38550 * 120.08323 * 0.02562 * 3 2 1 5 5 C 1.38243 * 120.01900 * 179.97438 * 4 3 2 6 6 C 1.50692 * 119.90492 * 179.97438 * 5 4 3 7 7 C 1.38300 * 120.19110 * 0.02562 * 5 4 3 8 8 C 1.38165 * 120.17484 * 359.69985 * 7 5 4 9 9 C 1.38797 * 119.98021 * 0.55742 * 8 7 5 10 10 N 1.39875 * 120.09847 * 179.74739 * 9 8 7 11 11 C 1.34777 * 120.00045 * 33.03358 * 10 9 8 12 12 O 1.21393 * 120.00208 * 355.45870 * 11 10 9 13 13 C 1.49339 * 119.99891 * 175.45620 * 11 10 9 14 14 O 1.21358 * 119.99683 * 5.55847 * 13 11 10 15 15 N 1.34777 * 119.99525 * 185.56343 * 13 11 10 16 16 C 1.46505 * 119.99499 * 185.06171 * 15 13 11 17 17 C 1.50692 * 109.46972 * 269.72349 * 16 15 13 18 18 H 1.07996 * 120.00245 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00189 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00483 * 179.97438 * 19 17 16 21 21 Si 1.86809 * 119.99749 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47071 * 89.99890 * 21 19 17 23 23 H 1.48502 * 109.47007 * 210.00439 * 21 19 17 24 24 H 1.48496 * 109.46947 * 330.00093 * 21 19 17 25 25 C 1.46497 * 120.00548 * 4.78125 * 15 13 11 26 26 C 1.53002 * 109.47076 * 276.17813 * 25 15 13 27 27 C 1.53007 * 117.49607 * 243.62112 * 26 25 15 28 28 C 1.52995 * 117.49908 * 174.99995 * 26 25 15 29 29 H 1.08999 * 109.47310 * 299.99883 * 1 2 3 30 30 H 1.08998 * 109.47282 * 60.00286 * 1 2 3 31 31 H 1.09009 * 109.47354 * 180.02562 * 1 2 3 32 32 H 1.07999 * 119.99064 * 359.95445 * 4 3 2 33 33 H 1.09001 * 109.47555 * 89.99797 * 6 5 4 34 34 H 1.08999 * 109.47195 * 209.99867 * 6 5 4 35 35 H 1.09006 * 109.46963 * 329.99998 * 6 5 4 36 36 H 1.07999 * 119.91098 * 179.97438 * 7 5 4 37 37 H 1.07998 * 120.01017 * 180.29730 * 8 7 5 38 38 H 0.97004 * 120.00050 * 213.04005 * 10 9 8 39 39 H 1.09000 * 109.47056 * 29.72164 * 16 15 13 40 40 H 1.08999 * 109.46994 * 149.72075 * 16 15 13 41 41 H 0.96997 * 120.00275 * 179.97438 * 20 19 17 42 42 H 1.08995 * 109.46888 * 36.17205 * 25 15 13 43 43 H 1.09001 * 109.47049 * 156.17641 * 25 15 13 44 44 H 1.08997 * 115.55149 * 29.32424 * 26 25 15 45 45 H 1.09003 * 117.49889 * 359.97438 * 27 26 25 46 46 H 1.08994 * 117.50005 * 145.02158 * 27 26 25 47 47 H 1.08998 * 117.50247 * 214.97450 * 28 26 25 48 48 H 1.09004 * 117.50183 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2934 2.3745 0.0005 5 6 1.9224 3.6055 0.0011 6 6 1.1011 4.8689 0.0011 7 6 3.3034 3.6809 0.0005 8 6 4.0619 2.5261 0.0057 9 6 3.4379 1.2864 -0.0002 10 7 4.2034 0.1157 -0.0003 11 6 5.3886 0.0855 0.6407 12 8 5.8304 1.0961 1.1477 13 6 6.1584 -1.1913 0.7273 14 8 5.7678 -2.1765 0.1360 15 7 7.2866 -1.2494 1.4622 16 6 8.1011 -2.4671 1.4588 17 6 7.6411 -3.3822 2.5641 18 1 6.8241 -3.0862 3.2053 19 6 8.2639 -4.5970 2.7575 20 7 7.8628 -5.3954 3.7225 21 14 9.6777 -5.1088 1.6488 22 1 10.9597 -4.6393 2.2329 23 1 9.7011 -6.5887 1.5279 24 1 9.4958 -4.5051 0.3043 25 6 7.7018 -0.0927 2.2597 26 6 8.4735 0.8872 1.3735 27 6 9.9429 1.1422 1.7155 28 6 8.8941 2.2207 1.9945 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2148 2.3194 0.0002 33 1 0.9026 5.1733 1.0287 34 1 1.6494 5.6588 -0.5123 35 1 0.1570 4.6885 -0.5132 36 1 3.7901 4.6450 0.0005 37 1 5.1401 2.5881 0.0101 38 1 3.8814 -0.6744 -0.4618 39 1 7.9936 -2.9734 0.4995 40 1 9.1474 -2.2049 1.6159 41 1 8.3008 -6.2502 3.8583 42 1 6.8207 0.4027 2.6673 43 1 8.3421 -0.4256 3.0766 44 1 8.1941 0.8885 0.3200 45 1 10.3597 0.6123 2.5720 46 1 10.6305 1.3114 0.8868 47 1 8.8917 3.0993 1.3495 48 1 8.6207 2.4001 3.0343 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132581631.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:22 Heat of formation + Delta-G solvation = -55.779546 kcal Electronic energy + Delta-G solvation = -30781.097606 eV Core-core repulsion = 26609.424860 eV Total energy + Delta-G solvation = -4171.672746 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.29451 -41.14053 -39.64982 -38.58746 -38.41102 -36.62194 -35.90759 -34.57779 -32.52747 -31.13945 -30.72092 -28.75321 -28.11472 -27.36636 -25.76844 -23.97378 -23.27756 -23.12150 -22.28673 -21.85096 -20.71260 -19.36233 -19.12495 -18.68687 -18.21649 -17.54700 -17.21759 -17.16659 -16.67314 -16.44815 -16.17097 -15.90049 -15.43675 -15.28266 -15.04619 -14.88387 -14.81960 -14.59120 -14.44019 -14.36893 -13.77798 -13.69062 -13.36053 -13.12590 -13.08041 -12.94371 -12.65632 -12.58698 -12.44984 -12.32684 -12.25029 -12.11596 -12.01653 -11.92751 -11.77558 -11.30434 -11.21269 -10.83788 -10.78518 -10.33227 -9.66993 -9.57457 -8.82055 -8.34978 -6.41745 -0.03520 0.39876 0.59394 1.26426 1.33689 1.38984 1.48378 2.11172 2.25277 2.30923 2.47684 2.74202 2.98342 3.03326 3.24027 3.81430 3.89385 3.91955 4.07580 4.16852 4.19104 4.29314 4.33043 4.39061 4.39221 4.44582 4.61204 4.68406 4.69077 4.72765 4.77620 4.84134 4.86276 4.90020 4.91754 5.06178 5.08980 5.10049 5.25459 5.31769 5.34940 5.39289 5.43276 5.47179 5.62749 5.83385 5.91702 6.17546 6.31250 6.36543 6.59112 6.68618 6.93966 7.22351 8.81970 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.003142 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.534866 B = 8910.299969 C =10665.667408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.341 6.341 3 C 0.100 3.900 4 C -0.193 4.193 5 C -0.059 4.059 6 C -0.111 4.111 7 C -0.142 4.142 8 C -0.091 4.091 9 C 0.078 3.922 10 N -0.632 5.632 11 C 0.512 3.488 12 O -0.491 6.491 13 C 0.491 3.509 14 O -0.555 6.555 15 N -0.559 5.559 16 C 0.226 3.774 17 C -0.540 4.540 18 H 0.027 0.973 19 C 0.015 3.985 20 N -0.943 5.943 21 Si 0.947 3.053 22 H -0.251 1.251 23 H -0.280 1.280 24 H -0.251 1.251 25 C 0.142 3.858 26 C -0.159 4.159 27 C -0.183 4.183 28 C -0.149 4.149 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.422 0.578 39 H 0.031 0.969 40 H 0.056 0.944 41 H 0.270 0.730 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.105 0.895 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.182 23.053 -9.521 27.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.255 6.255 3 C 0.053 3.947 4 C -0.212 4.212 5 C -0.059 4.059 6 C -0.167 4.167 7 C -0.161 4.161 8 C -0.111 4.111 9 C -0.016 4.016 10 N -0.278 5.278 11 C 0.294 3.706 12 O -0.366 6.366 13 C 0.273 3.727 14 O -0.434 6.434 15 N -0.289 5.289 16 C 0.105 3.895 17 C -0.579 4.579 18 H 0.046 0.954 19 C -0.183 4.183 20 N -0.582 5.582 21 Si 0.769 3.231 22 H -0.175 1.175 23 H -0.206 1.206 24 H -0.175 1.175 25 C 0.020 3.980 26 C -0.179 4.179 27 C -0.219 4.219 28 C -0.186 4.186 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.130 0.870 32 H 0.175 0.825 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.260 0.740 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.094 0.906 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.913 22.840 -9.336 26.981 hybrid contribution 0.070 -1.529 -0.182 1.542 sum -10.844 21.311 -9.518 25.736 Atomic orbital electron populations 1.23354 0.75974 1.05442 1.02621 1.86064 1.23945 1.26597 1.88858 1.18970 0.90099 0.86033 0.99577 1.21220 1.00957 0.90504 1.08472 1.20140 0.94011 0.95643 0.96148 1.20857 0.99417 0.93067 1.03404 1.21143 0.93401 0.98316 1.03193 1.21269 1.01439 0.90074 0.98296 1.17397 0.87533 0.86643 1.10000 1.42899 1.18596 1.14936 1.51384 1.20003 0.82349 0.88925 0.79295 1.90699 1.67447 1.34166 1.44278 1.20253 0.82566 0.88522 0.81350 1.90711 1.67880 1.37565 1.47276 1.47852 1.22058 1.15970 1.43025 1.19543 0.91161 0.82204 0.96624 1.21440 1.18088 1.03130 1.15209 0.95435 1.25827 1.00216 0.95692 0.96584 1.70041 1.43623 1.11330 1.33248 0.85722 0.79360 0.77991 0.80015 1.17508 1.20590 1.17513 1.21479 1.00089 0.83944 0.92516 1.22337 0.97212 0.99060 0.99246 1.23186 0.91530 1.03465 1.03767 1.22868 1.01749 0.91931 1.02048 0.91514 0.90775 0.87046 0.82478 0.90073 0.90083 0.90203 0.83286 0.84240 0.74032 0.95111 0.92569 0.92106 0.89198 0.90617 0.89327 0.88769 0.87933 0.87635 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.81 113.37 1.11 1.40 16 2 O -0.34 -8.39 10.03 -93.10 -0.93 -9.33 16 3 C 0.10 2.49 6.70 22.62 0.15 2.64 16 4 C -0.19 -3.53 8.69 22.35 0.19 -3.33 16 5 C -0.06 -0.98 5.88 -19.85 -0.12 -1.10 16 6 C -0.11 -1.03 10.01 71.23 0.71 -0.32 16 7 C -0.14 -2.74 9.69 22.27 0.22 -2.53 16 8 C -0.09 -2.32 8.71 22.39 0.20 -2.13 16 9 C 0.08 2.22 6.35 38.26 0.24 2.47 16 10 N -0.63 -20.58 5.19 -304.49 -1.58 -22.16 16 11 C 0.51 18.66 7.55 87.23 0.66 19.31 16 12 O -0.49 -16.96 9.29 -3.38 -0.03 -17.00 16 13 C 0.49 21.57 7.68 87.23 0.67 22.24 16 14 O -0.56 -27.72 16.11 -3.27 -0.05 -27.77 16 15 N -0.56 -24.62 2.47 -827.88 -2.05 -26.67 16 16 C 0.23 11.20 4.17 85.63 0.36 11.56 16 17 C -0.54 -32.18 9.94 25.60 0.25 -31.92 16 18 H 0.03 1.85 8.06 -2.91 -0.02 1.82 16 19 C 0.02 0.90 5.47 84.66 0.46 1.37 16 20 N -0.94 -59.73 13.96 21.45 0.30 -59.43 16 21 Si 0.95 44.04 27.47 68.60 1.88 45.92 16 22 H -0.25 -10.72 7.11 99.48 0.71 -10.01 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 24 H -0.25 -11.14 6.54 99.48 0.65 -10.48 16 25 C 0.14 5.17 5.26 86.38 0.45 5.62 16 26 C -0.16 -4.76 4.44 -10.79 -0.05 -4.81 16 27 C -0.18 -4.55 10.18 30.60 0.31 -4.24 16 28 C -0.15 -3.48 10.25 30.59 0.31 -3.17 16 29 H 0.07 0.79 7.66 -2.39 -0.02 0.77 16 30 H 0.07 0.76 7.66 -2.39 -0.02 0.74 16 31 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.16 1.93 6.30 -2.91 -0.02 1.91 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.59 8.08 -2.39 -0.02 0.57 16 35 H 0.08 0.54 8.08 -2.38 -0.02 0.52 16 36 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 37 H 0.14 3.81 6.07 -2.91 -0.02 3.79 16 38 H 0.42 13.77 8.01 -92.71 -0.74 13.02 16 39 H 0.03 1.60 6.55 -2.39 -0.02 1.59 16 40 H 0.06 2.53 7.50 -2.39 -0.02 2.52 16 41 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 42 H 0.09 3.31 5.97 -2.39 -0.01 3.29 16 43 H 0.08 2.80 7.76 -2.39 -0.02 2.78 16 44 H 0.09 2.82 7.92 -2.39 -0.02 2.80 16 45 H 0.09 2.37 8.03 -2.39 -0.02 2.36 16 46 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 Total: -1.00 -75.77 396.77 3.87 -71.89 By element: Atomic # 1 Polarization: 31.28 SS G_CDS: 0.19 Total: 31.47 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 6.14 Total: 13.07 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -3.33 Total: -108.26 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -1.02 Total: -54.09 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -75.77 3.87 -71.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132581631.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.112 kcal (2) G-P(sol) polarization free energy of solvation -75.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds