Wall clock time and date at job start Sat Apr 11 2020 07:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47443 * 2 1 4 4 C 1.52998 * 109.47443 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.47089 * 59.99700 * 4 3 2 6 6 N 1.46498 * 109.47073 * 59.99987 * 5 4 3 7 7 S 1.65602 * 119.99612 * 144.72141 * 6 5 4 8 8 O 1.42109 * 104.27511 * 181.34803 * 7 6 5 9 9 O 1.42098 * 104.28120 * 309.20801 * 7 6 5 10 10 C 1.81394 * 104.44973 * 65.28269 * 7 6 5 11 11 C 1.50697 * 109.47387 * 179.97438 * 10 7 6 12 12 O 1.21279 * 119.99738 * 359.97438 * 11 10 7 13 13 N 1.34779 * 119.99975 * 179.97438 * 11 10 7 14 14 C 1.46500 * 119.99865 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47259 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47252 * 180.02562 * 15 14 13 17 17 C 1.50707 * 109.47357 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99272 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00205 * 180.02562 * 17 16 15 20 20 N 1.31520 * 119.99869 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 119.99895 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47424 * 0.02562 * 21 19 17 23 23 H 1.48510 * 109.47183 * 120.00083 * 21 19 17 24 24 H 1.48501 * 109.47175 * 240.00031 * 21 19 17 25 25 C 1.52998 * 109.46913 * 300.00253 * 5 4 3 26 26 C 1.52996 * 109.47336 * 60.00343 * 25 5 4 27 27 H 1.09003 * 109.46839 * 60.00208 * 1 2 3 28 28 H 1.09000 * 109.47524 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47138 * 300.00460 * 1 2 3 30 30 H 1.09003 * 109.46839 * 119.99792 * 2 1 3 31 31 H 1.08996 * 109.47329 * 59.99657 * 3 2 1 32 32 H 1.09003 * 109.46933 * 299.99734 * 3 2 1 33 33 H 1.09003 * 109.46839 * 299.99792 * 4 3 2 34 34 H 1.08994 * 109.47488 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.46856 * 180.02562 * 5 4 3 36 36 H 0.97001 * 120.00384 * 325.00619 * 6 5 4 37 37 H 1.09009 * 109.47044 * 299.99503 * 10 7 6 38 38 H 1.09001 * 109.47747 * 59.99183 * 10 7 6 39 39 H 0.96995 * 120.00309 * 0.02562 * 13 11 10 40 40 H 1.09003 * 109.47548 * 300.00563 * 14 13 11 41 41 H 1.09007 * 109.46659 * 60.00374 * 14 13 11 42 42 H 1.08995 * 109.47693 * 300.00564 * 15 14 13 43 43 H 1.09007 * 109.46742 * 60.00715 * 15 14 13 44 44 H 1.09002 * 109.47420 * 300.00185 * 16 15 14 45 45 H 1.08994 * 109.47311 * 60.00242 * 16 15 14 46 46 H 0.96999 * 119.99188 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.46713 * 179.97438 * 25 5 4 48 48 H 1.08999 * 109.47174 * 299.99288 * 25 5 4 49 49 H 1.09003 * 109.47419 * 179.97438 * 26 25 5 50 50 H 1.08994 * 109.47433 * 59.99562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0806 0.7209 -1.2483 6 7 3.5927 1.4113 -2.4448 7 16 4.5456 1.4990 -3.7964 8 8 3.7733 2.2524 -4.7213 9 8 5.7917 1.9843 -3.3159 10 6 4.7035 -0.2208 -4.3512 11 6 5.5590 -0.2722 -5.5907 12 8 6.0167 0.7507 -6.0544 13 7 5.8154 -1.4550 -6.1840 14 6 6.6467 -1.5049 -7.3893 15 6 6.7810 -2.9556 -7.8565 16 6 7.6496 -3.0078 -9.1149 17 6 7.7814 -4.4367 -9.5755 18 1 7.2940 -5.2282 -9.0258 19 6 8.5242 -4.7333 -10.6984 20 7 9.1174 -3.7691 -11.3681 21 14 8.6881 -6.5044 -11.2688 22 1 7.9310 -7.3924 -10.3504 23 1 8.1423 -6.6342 -12.6439 24 1 10.1209 -6.8948 -11.2662 25 6 3.5705 -0.7216 -1.2482 26 6 2.0405 -0.7215 -1.2489 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9562 -0.8900 33 1 3.9329 0.9287 0.8909 34 1 3.9334 2.4700 0.0002 35 1 5.1706 0.7205 -1.2475 36 1 2.7133 1.8206 -2.4439 37 1 5.1675 -0.8154 -3.5642 38 1 3.7153 -0.6226 -4.5753 39 1 5.4490 -2.2730 -5.8133 40 1 6.1818 -0.9109 -8.1762 41 1 7.6349 -1.1025 -7.1660 42 1 7.2461 -3.5492 -7.0695 43 1 5.7929 -3.3583 -8.0797 44 1 7.1849 -2.4141 -9.9021 45 1 8.6375 -2.6052 -8.8914 46 1 9.6403 -3.9780 -12.1579 47 1 3.9338 -1.2354 -2.1382 48 1 3.9335 -1.2353 -0.3580 49 1 1.6771 -1.7492 -1.2493 50 1 1.6776 -0.2079 -2.1391 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170902450.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:50:30 Heat of formation + Delta-G solvation = -177.228722 kcal Electronic energy + Delta-G solvation = -28597.567262 eV Core-core repulsion = 24556.072035 eV Total energy + Delta-G solvation = -4041.495226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.00778 -40.19575 -38.25018 -37.18698 -37.03654 -35.40196 -35.26110 -33.34746 -31.86681 -31.44169 -31.24163 -28.37835 -26.91180 -25.03440 -23.50677 -22.41698 -22.22123 -21.94326 -20.98868 -19.88113 -19.12576 -18.62516 -17.99511 -17.79514 -17.42223 -16.93062 -16.60120 -16.32595 -16.20183 -15.87224 -15.63702 -15.18501 -15.04872 -14.83865 -14.38626 -14.28981 -14.16881 -13.96647 -13.79021 -13.45604 -13.27850 -13.20813 -13.10272 -12.93392 -12.80259 -12.79120 -12.57753 -12.44053 -12.39397 -12.21716 -12.08789 -12.00242 -11.77994 -11.70543 -11.36311 -11.31055 -11.16422 -11.10837 -10.89427 -10.56765 -10.32418 -10.30178 -8.20012 -6.31556 -0.93704 1.24716 1.41869 1.41963 1.54997 1.64610 2.00733 2.41727 2.80070 3.14073 3.14142 3.35099 3.74776 3.83342 3.86697 3.93471 4.10360 4.13650 4.18277 4.22467 4.27441 4.39463 4.52009 4.59055 4.64851 4.68699 4.75443 4.85748 4.90916 4.91346 4.98967 5.06389 5.15700 5.22084 5.24244 5.26084 5.27952 5.34095 5.43075 5.49058 5.51237 5.55072 5.69478 5.69707 5.83789 6.09539 6.19142 6.25860 6.86522 6.95265 7.38304 8.92252 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.001886 C = 0.001771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.855307 B =14846.075195 C =15806.155314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.117 4.117 4 C -0.121 4.121 5 C 0.134 3.866 6 N -1.097 6.097 7 S 2.647 3.353 8 O -0.990 6.990 9 O -0.985 6.985 10 C -0.657 4.657 11 C 0.526 3.474 12 O -0.594 6.594 13 N -0.694 5.694 14 C 0.120 3.880 15 C -0.101 4.101 16 C 0.020 3.980 17 C -0.539 4.539 18 H 0.069 0.931 19 C -0.006 4.006 20 N -0.936 5.936 21 Si 0.968 3.032 22 H -0.256 1.256 23 H -0.281 1.281 24 H -0.281 1.281 25 C -0.146 4.146 26 C -0.118 4.118 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.424 0.576 37 H 0.203 0.797 38 H 0.206 0.794 39 H 0.425 0.575 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.073 0.927 43 H 0.072 0.928 44 H -0.008 1.008 45 H -0.008 1.008 46 H 0.263 0.737 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.071 0.929 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.328 4.297 30.365 36.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.110 4.110 3 C -0.155 4.155 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.861 5.861 7 S 2.738 3.262 8 O -0.980 6.980 9 O -0.974 6.974 10 C -0.786 4.786 11 C 0.312 3.688 12 O -0.476 6.476 13 N -0.345 5.345 14 C -0.004 4.004 15 C -0.139 4.139 16 C -0.018 4.018 17 C -0.577 4.577 18 H 0.087 0.913 19 C -0.203 4.203 20 N -0.576 5.576 21 Si 0.793 3.207 22 H -0.180 1.180 23 H -0.207 1.207 24 H -0.207 1.207 25 C -0.185 4.185 26 C -0.156 4.156 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.263 0.737 37 H 0.220 0.780 38 H 0.223 0.777 39 H 0.263 0.737 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.010 0.990 45 H 0.011 0.989 46 H 0.071 0.929 47 H 0.100 0.900 48 H 0.111 0.889 49 H 0.089 0.911 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.360 5.718 29.515 35.226 hybrid contribution -0.163 -1.213 -0.730 1.425 sum -18.523 4.505 28.785 34.525 Atomic orbital electron populations 1.21843 0.95430 1.01779 1.01662 1.21145 0.95273 0.95699 0.98867 1.21614 0.94847 0.96886 1.02152 1.21767 0.96373 1.00952 0.96940 1.21167 0.99084 0.92418 0.84533 1.55504 1.33045 1.70981 1.26597 1.03636 0.73235 0.76454 0.72915 1.93540 1.71197 1.68580 1.64693 1.93543 1.46281 1.77638 1.79945 1.31130 1.11813 1.30106 1.05600 1.19929 0.80340 0.83995 0.84572 1.90858 1.54723 1.35044 1.66997 1.45787 1.51311 1.09236 1.28187 1.21427 0.94297 0.98679 0.86015 1.21604 1.00966 0.93078 0.98256 1.18978 0.94072 0.95981 0.92748 1.21709 1.30960 0.94104 1.10885 0.91286 1.26051 0.95299 1.02056 0.96942 1.70128 1.34113 1.34262 1.19087 0.85350 0.77909 0.79277 0.78182 1.17994 1.20740 1.20701 1.22252 0.96836 0.94911 1.04479 1.21606 0.94922 1.00979 0.98058 0.92992 0.92562 0.92787 0.90652 0.91397 0.92166 0.89016 0.91832 0.88854 0.73743 0.77979 0.77662 0.73692 0.92747 0.92684 0.90853 0.90916 0.98997 0.98948 0.92870 0.90016 0.88859 0.91059 0.91693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.19 71.98 0.66 -0.23 16 2 C -0.09 -0.48 2.72 -10.79 -0.03 -0.50 16 3 C -0.12 -0.73 5.02 30.59 0.15 -0.58 16 4 C -0.12 -0.85 5.63 30.60 0.17 -0.68 16 5 C 0.13 1.08 3.02 44.99 0.14 1.22 16 6 N -1.10 -12.73 4.63 -169.38 -0.78 -13.52 16 7 S 2.65 57.13 4.58 -56.49 -0.26 56.87 16 8 O -0.99 -30.04 18.08 -127.64 -2.31 -32.35 16 9 O -0.98 -29.54 17.38 -127.64 -2.22 -31.76 16 10 C -0.66 -9.06 5.74 71.24 0.41 -8.65 16 11 C 0.53 14.09 7.85 87.66 0.69 14.78 16 12 O -0.59 -22.87 15.86 -3.03 -0.05 -22.92 16 13 N -0.69 -16.92 5.56 -463.05 -2.57 -19.49 16 14 C 0.12 4.05 5.67 86.38 0.49 4.54 16 15 C -0.10 -3.68 5.27 30.59 0.16 -3.51 16 16 C 0.02 1.02 4.97 29.85 0.15 1.17 16 17 C -0.54 -29.44 9.11 25.60 0.23 -29.21 16 18 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 19 C -0.01 -0.34 5.46 84.65 0.46 0.13 16 20 N -0.94 -56.92 13.29 21.45 0.28 -56.64 16 21 Si 0.97 43.25 29.54 68.60 2.03 45.28 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 25 C -0.15 -0.55 5.61 30.59 0.17 -0.38 16 26 C -0.12 -0.54 5.05 30.59 0.15 -0.38 16 27 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.08 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.06 0.41 6.51 -2.39 -0.02 0.40 16 33 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.09 0.84 7.47 -2.39 -0.02 0.82 16 36 H 0.42 3.96 6.78 -96.74 -0.66 3.30 16 37 H 0.20 0.99 6.79 -2.39 -0.02 0.98 16 38 H 0.21 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.42 6.54 8.47 -92.71 -0.79 5.75 16 40 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 43 H 0.07 2.41 8.14 -2.38 -0.02 2.40 16 44 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 45 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 46 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 47 H 0.08 0.07 5.82 -2.39 -0.01 0.05 16 48 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 49 H 0.07 0.27 8.14 -2.39 -0.02 0.26 16 50 H 0.06 0.32 7.44 -2.39 -0.02 0.30 16 Total: -1.00 -86.51 406.15 -2.37 -88.88 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -0.51 Total: 7.93 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: 4.01 Total: -22.30 kcal Atomic # 7 Polarization: -86.57 SS G_CDS: -3.07 Total: -89.64 kcal Atomic # 8 Polarization: -82.45 SS G_CDS: -4.57 Total: -87.02 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Atomic # 16 Polarization: 57.13 SS G_CDS: -0.26 Total: 56.87 kcal Total: -86.51 -2.37 -88.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170902450.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.346 kcal (2) G-P(sol) polarization free energy of solvation -86.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds