Wall clock time and date at job start Sat Apr 11 2020 07:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.34930 * 116.99658 * 2 1 4 4 O 1.21661 * 120.00024 * 359.97438 * 3 2 1 5 5 C 1.41557 * 119.99983 * 180.02562 * 3 2 1 6 6 C 1.33865 * 125.97652 * 179.69386 * 5 3 2 7 7 C 1.50704 * 122.92616 * 359.95763 * 6 5 3 8 8 O 1.33764 * 114.14344 * 179.79287 * 6 5 3 9 9 C 1.45601 * 110.37403 * 0.47781 * 8 6 5 10 10 H 1.09002 * 110.49312 * 118.40264 * 9 8 6 11 11 C 1.53005 * 110.49190 * 241.06385 * 9 8 6 12 12 N 1.46895 * 109.47071 * 288.40403 * 11 9 8 13 13 C 1.46901 * 110.99999 * 76.39610 * 12 11 9 14 14 C 1.50708 * 109.47068 * 59.98988 * 13 12 11 15 15 H 1.07998 * 119.99544 * 4.50847 * 14 13 12 16 16 C 1.37876 * 119.99709 * 184.51740 * 14 13 12 17 17 N 1.31504 * 120.00402 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99607 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46936 * 89.99775 * 18 16 14 20 20 H 1.48497 * 109.47191 * 209.99739 * 18 16 14 21 21 H 1.48497 * 109.47194 * 329.99871 * 18 16 14 22 22 C 1.46901 * 110.99766 * 200.34961 * 12 11 9 23 23 C 1.50703 * 109.46998 * 164.50264 * 22 12 11 24 24 C 1.38234 * 119.61801 * 94.72756 * 23 22 12 25 25 C 1.38624 * 119.16134 * 179.75455 * 24 23 22 26 26 C 1.38677 * 118.42029 * 0.51260 * 25 24 23 27 27 C 1.38183 * 119.16137 * 359.72942 * 26 25 24 28 28 N 1.31850 * 119.61874 * 275.00175 * 23 22 12 29 29 C 1.51454 * 125.97234 * 359.97438 * 5 3 2 30 30 H 1.09003 * 109.47346 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47415 * 60.00224 * 1 2 3 32 32 H 1.08996 * 109.47461 * 299.99935 * 1 2 3 33 33 H 1.08997 * 109.46905 * 90.00481 * 7 6 5 34 34 H 1.09009 * 109.46854 * 210.00337 * 7 6 5 35 35 H 1.08995 * 109.47150 * 329.99781 * 7 6 5 36 36 H 1.08999 * 109.46635 * 48.40705 * 11 9 8 37 37 H 1.09003 * 109.46686 * 168.40403 * 11 9 8 38 38 H 1.08998 * 109.47294 * 179.97438 * 13 12 11 39 39 H 1.08999 * 109.47421 * 299.98532 * 13 12 11 40 40 H 0.97000 * 120.00479 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47125 * 284.49882 * 22 12 11 42 42 H 1.09002 * 109.47234 * 44.50336 * 22 12 11 43 43 H 1.07998 * 120.41490 * 359.97438 * 24 23 22 44 44 H 1.07994 * 120.79108 * 180.26396 * 25 24 23 45 45 H 1.07992 * 120.42157 * 179.71128 * 26 25 24 46 46 H 1.08001 * 119.61542 * 180.02562 * 27 26 25 47 47 H 1.09001 * 110.66206 * 298.44978 * 29 5 3 48 48 H 1.09000 * 110.65832 * 61.55670 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0415 1.2023 0.0000 4 8 1.3788 2.2226 -0.0005 5 6 3.4551 1.2764 -0.0005 6 6 4.1836 2.3995 -0.0064 7 6 3.5683 3.7751 -0.0143 8 8 5.5054 2.1942 -0.0011 9 6 5.7968 0.7676 -0.0015 10 1 6.3528 0.4919 -0.8976 11 6 6.5782 0.3802 1.2557 12 7 7.9477 0.9031 1.1615 13 6 7.9796 2.3469 1.4302 14 6 7.4555 2.6114 2.8182 15 1 7.1997 1.7853 3.4652 16 6 7.3024 3.9078 3.2619 17 7 7.6141 4.9136 2.4741 18 14 6.6520 4.2355 4.9821 19 1 7.7883 4.3065 5.9356 20 1 5.9137 5.5239 4.9951 21 1 5.7372 3.1367 5.3831 22 6 8.8509 0.1792 2.0662 23 6 10.2802 0.4632 1.6821 24 6 10.9716 1.4745 2.3225 25 6 12.2876 1.7243 1.9653 26 6 12.8582 0.9511 0.9654 27 6 12.1032 -0.0393 0.3665 28 7 10.8550 -0.2522 0.7355 29 6 4.4077 0.0990 -0.0006 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 3.4195 4.1124 1.0114 34 1 4.2326 4.4673 -0.5318 35 1 2.6078 3.7405 -0.5285 36 1 6.0876 0.8021 2.1328 37 1 6.6091 -0.7058 1.3439 38 1 9.0052 2.7081 1.3544 39 1 7.3567 2.8659 0.7016 40 1 7.5068 5.8256 2.7863 41 1 8.6781 0.5072 3.0911 42 1 8.6600 -0.8913 1.9902 43 1 10.4937 2.0603 3.0937 44 1 12.8537 2.5050 2.4513 45 1 13.8795 1.1210 0.6585 46 1 12.5404 -0.6460 -0.4127 47 1 4.2723 -0.5054 0.8963 48 1 4.2716 -0.5057 -0.8972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270451624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:09 Heat of formation + Delta-G solvation = -58.752984 kcal Electronic energy + Delta-G solvation = -31086.042632 eV Core-core repulsion = 26914.240948 eV Total energy + Delta-G solvation = -4171.801684 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.02496 -39.83137 -39.67010 -36.77181 -36.27134 -32.82689 -32.59307 -32.36086 -31.89798 -30.82405 -28.53759 -27.38660 -27.14151 -25.32959 -23.93038 -23.07763 -22.89173 -22.10355 -21.20454 -19.98583 -19.33981 -17.39927 -16.84473 -16.65732 -16.27447 -16.08887 -15.89095 -15.49621 -15.14584 -14.88963 -14.70865 -14.61682 -14.18493 -13.70476 -13.25513 -13.22125 -13.10910 -12.92605 -12.82378 -12.67938 -12.49137 -12.26558 -12.14604 -11.95212 -11.72190 -11.48587 -11.30634 -11.07845 -10.97480 -10.86117 -10.78440 -10.71357 -10.58550 -10.14625 -10.06761 -10.01497 -9.65686 -9.41692 -8.98031 -8.55555 -8.43208 -8.04671 -7.28384 -6.05489 -4.13566 1.46706 1.53620 1.72269 3.09863 3.21966 3.30326 3.30764 3.32838 3.52899 4.15037 4.36184 4.65185 4.77550 4.91242 5.14126 5.15741 5.17371 5.22088 5.24016 5.26299 5.27961 5.40973 5.45498 5.52394 5.62455 5.67672 5.71145 5.79567 5.87246 5.90342 6.01285 6.05038 6.11573 6.16869 6.21419 6.26744 6.37332 6.47201 6.58179 6.63492 6.66308 6.72122 7.12105 7.23085 7.39573 7.57018 7.91909 7.95223 8.12495 8.20062 8.24254 8.47926 8.96017 9.51848 10.99479 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.003522 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.934963 B = 7947.990932 C = 9648.783526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.356 6.356 3 C 0.544 3.456 4 O -0.534 6.534 5 C -0.369 4.369 6 C 0.235 3.765 7 C -0.119 4.119 8 O -0.251 6.251 9 C 0.085 3.915 10 H 0.107 0.893 11 C 0.052 3.948 12 N -0.532 5.532 13 C 0.180 3.820 14 C -0.546 4.546 15 H 0.054 0.946 16 C 0.072 3.928 17 N -0.883 5.883 18 Si 0.878 3.122 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.275 1.275 22 C 0.105 3.895 23 C 0.155 3.845 24 C -0.146 4.146 25 C -0.083 4.083 26 C -0.186 4.186 27 C 0.087 3.913 28 N -0.474 5.474 29 C -0.082 4.082 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.027 0.973 39 H 0.055 0.945 40 H 0.261 0.739 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.142 0.858 44 H 0.128 0.872 45 H 0.125 0.875 46 H 0.147 0.853 47 H 0.083 0.917 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.998 -9.057 -4.547 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.273 6.273 3 C 0.396 3.604 4 O -0.429 6.429 5 C -0.373 4.373 6 C 0.181 3.819 7 C -0.175 4.175 8 O -0.159 6.159 9 C 0.029 3.971 10 H 0.125 0.875 11 C -0.076 4.076 12 N -0.256 5.256 13 C 0.055 3.945 14 C -0.585 4.585 15 H 0.072 0.928 16 C -0.131 4.131 17 N -0.521 5.521 18 Si 0.706 3.294 19 H -0.207 1.207 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.023 4.023 23 C 0.017 3.983 24 C -0.166 4.166 25 C -0.109 4.109 26 C -0.207 4.207 27 C -0.070 4.070 28 N -0.184 5.184 29 C -0.120 4.120 30 H 0.113 0.887 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.045 0.955 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.160 0.840 44 H 0.146 0.854 45 H 0.143 0.857 46 H 0.164 0.836 47 H 0.101 0.899 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.284 -9.180 -5.450 10.918 hybrid contribution -0.272 1.114 2.294 2.565 sum -2.556 -8.066 -3.156 9.030 Atomic orbital electron populations 1.22766 0.77885 1.02960 1.02045 1.86200 1.22409 1.33501 1.85192 1.18548 0.87984 0.81011 0.72873 1.90788 1.67089 1.35368 1.49619 1.19313 0.91436 0.95635 1.30875 1.22239 0.83961 0.96074 0.79639 1.21116 1.01545 0.89727 1.05111 1.87073 1.18775 1.28217 1.81811 1.23846 0.95449 0.76677 1.01091 0.87538 1.22312 0.90697 0.98457 0.96160 1.62455 1.05119 1.07367 1.50659 1.20001 0.97755 0.81081 0.95711 1.21609 1.44591 0.91954 1.00352 0.92813 1.24851 0.95218 0.96309 0.96735 1.69936 1.47760 0.98766 1.35666 0.86824 0.79198 0.77876 0.85512 1.20699 1.21136 1.20037 1.20849 0.87232 0.97960 0.96281 1.21187 0.95937 0.90874 0.90343 1.22212 0.94571 0.98025 1.01804 1.21543 0.95168 0.98058 0.96091 1.22007 1.01233 0.98463 0.98951 1.22612 0.90177 0.95939 0.98293 1.67474 1.10713 1.27631 1.12545 1.21440 0.90707 0.96504 1.03332 0.88663 0.92578 0.92527 0.88508 0.89911 0.87367 0.91633 0.90748 0.95478 0.92720 0.92903 0.91879 0.91176 0.84034 0.85443 0.85672 0.83569 0.89900 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.45 101.05 1.06 1.46 16 2 O -0.36 -5.12 10.26 -41.12 -0.42 -5.54 16 3 C 0.54 8.97 7.71 32.00 0.25 9.21 16 4 O -0.53 -9.53 13.80 -19.39 -0.27 -9.80 16 5 C -0.37 -6.13 6.06 -104.52 -0.63 -6.76 16 6 C 0.23 4.17 7.05 -35.84 -0.25 3.91 16 7 C -0.12 -1.93 9.62 36.01 0.35 -1.58 16 8 O -0.25 -4.91 8.26 -13.34 -0.11 -5.02 16 9 C 0.08 1.40 4.03 -26.12 -0.11 1.30 16 10 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 11 C 0.05 0.93 4.48 -3.82 -0.02 0.91 16 12 N -0.53 -10.65 4.59 -237.51 -1.09 -11.74 16 13 C 0.18 4.30 4.68 -4.97 -0.02 4.27 16 14 C -0.55 -13.76 7.17 -34.44 -0.25 -14.00 16 15 H 0.05 1.35 6.08 -52.49 -0.32 1.03 16 16 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 17 N -0.88 -24.54 13.28 55.43 0.74 -23.80 16 18 Si 0.88 20.53 29.54 -169.99 -5.02 15.51 16 19 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.11 1.95 5.14 -4.97 -0.03 1.92 16 23 C 0.15 2.85 5.83 -82.58 -0.48 2.37 16 24 C -0.15 -2.60 8.36 -39.44 -0.33 -2.93 16 25 C -0.08 -1.25 10.18 -39.28 -0.40 -1.65 16 26 C -0.19 -2.53 10.11 -39.44 -0.40 -2.93 16 27 C 0.09 1.28 11.18 -17.55 -0.20 1.08 16 28 N -0.47 -8.37 10.27 -9.47 -0.10 -8.47 16 29 C -0.08 -1.19 6.44 -26.90 -0.17 -1.37 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 32 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 33 H 0.10 1.61 8.14 -51.93 -0.42 1.19 16 34 H 0.08 1.27 8.14 -51.92 -0.42 0.85 16 35 H 0.11 1.68 5.90 -51.93 -0.31 1.37 16 36 H 0.07 1.33 6.20 -51.93 -0.32 1.00 16 37 H 0.07 1.11 7.64 -51.93 -0.40 0.72 16 38 H 0.03 0.71 6.35 -51.93 -0.33 0.38 16 39 H 0.05 1.45 5.77 -51.93 -0.30 1.15 16 40 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 41 H 0.06 1.23 6.28 -51.93 -0.33 0.90 16 42 H 0.07 1.17 7.69 -51.93 -0.40 0.77 16 43 H 0.14 2.69 8.06 -52.49 -0.42 2.27 16 44 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 45 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 46 H 0.15 1.67 8.06 -52.49 -0.42 1.24 16 47 H 0.08 1.15 7.74 -51.93 -0.40 0.75 16 48 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -30.61 392.42 -8.97 -39.58 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.89 Total: 6.33 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -1.73 Total: -2.97 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.45 Total: -44.01 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -0.80 Total: -20.35 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.61 -8.97 -39.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270451624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.173 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds