Wall clock time and date at job start Sat Apr 11 2020 07:51:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.34930 * 116.99658 * 2 1 4 4 O 1.21661 * 120.00024 * 359.97438 * 3 2 1 5 5 C 1.41557 * 119.99983 * 180.02562 * 3 2 1 6 6 C 1.33865 * 125.97652 * 179.69386 * 5 3 2 7 7 C 1.50704 * 122.92616 * 359.95763 * 6 5 3 8 8 O 1.33764 * 114.14344 * 179.79287 * 6 5 3 9 9 C 1.45601 * 110.37403 * 0.47781 * 8 6 5 10 10 H 1.09002 * 110.49312 * 118.40264 * 9 8 6 11 11 C 1.53005 * 110.49190 * 241.06385 * 9 8 6 12 12 N 1.46895 * 109.47071 * 288.40403 * 11 9 8 13 13 C 1.46901 * 110.99999 * 76.39610 * 12 11 9 14 14 C 1.50708 * 109.47068 * 59.98988 * 13 12 11 15 15 H 1.07998 * 119.99544 * 4.50847 * 14 13 12 16 16 C 1.37876 * 119.99709 * 184.51740 * 14 13 12 17 17 N 1.31504 * 120.00402 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99607 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.46936 * 89.99775 * 18 16 14 20 20 H 1.48497 * 109.47191 * 209.99739 * 18 16 14 21 21 H 1.48497 * 109.47194 * 329.99871 * 18 16 14 22 22 C 1.46901 * 110.99766 * 200.34961 * 12 11 9 23 23 C 1.50703 * 109.46998 * 164.50264 * 22 12 11 24 24 C 1.38234 * 119.61801 * 94.72756 * 23 22 12 25 25 C 1.38624 * 119.16134 * 179.75455 * 24 23 22 26 26 C 1.38677 * 118.42029 * 0.51260 * 25 24 23 27 27 C 1.38183 * 119.16137 * 359.72942 * 26 25 24 28 28 N 1.31850 * 119.61874 * 275.00175 * 23 22 12 29 29 C 1.51454 * 125.97234 * 359.97438 * 5 3 2 30 30 H 1.09003 * 109.47346 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47415 * 60.00224 * 1 2 3 32 32 H 1.08996 * 109.47461 * 299.99935 * 1 2 3 33 33 H 1.08997 * 109.46905 * 90.00481 * 7 6 5 34 34 H 1.09009 * 109.46854 * 210.00337 * 7 6 5 35 35 H 1.08995 * 109.47150 * 329.99781 * 7 6 5 36 36 H 1.08999 * 109.46635 * 48.40705 * 11 9 8 37 37 H 1.09003 * 109.46686 * 168.40403 * 11 9 8 38 38 H 1.08998 * 109.47294 * 179.97438 * 13 12 11 39 39 H 1.08999 * 109.47421 * 299.98532 * 13 12 11 40 40 H 0.97000 * 120.00479 * 180.02562 * 17 16 14 41 41 H 1.08995 * 109.47125 * 284.49882 * 22 12 11 42 42 H 1.09002 * 109.47234 * 44.50336 * 22 12 11 43 43 H 1.07998 * 120.41490 * 359.97438 * 24 23 22 44 44 H 1.07994 * 120.79108 * 180.26396 * 25 24 23 45 45 H 1.07992 * 120.42157 * 179.71128 * 26 25 24 46 46 H 1.08001 * 119.61542 * 180.02562 * 27 26 25 47 47 H 1.09001 * 110.66206 * 298.44978 * 29 5 3 48 48 H 1.09000 * 110.65832 * 61.55670 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0415 1.2023 0.0000 4 8 1.3788 2.2226 -0.0005 5 6 3.4551 1.2764 -0.0005 6 6 4.1836 2.3995 -0.0064 7 6 3.5683 3.7751 -0.0143 8 8 5.5054 2.1942 -0.0011 9 6 5.7968 0.7676 -0.0015 10 1 6.3528 0.4919 -0.8976 11 6 6.5782 0.3802 1.2557 12 7 7.9477 0.9031 1.1615 13 6 7.9796 2.3469 1.4302 14 6 7.4555 2.6114 2.8182 15 1 7.1997 1.7853 3.4652 16 6 7.3024 3.9078 3.2619 17 7 7.6141 4.9136 2.4741 18 14 6.6520 4.2355 4.9821 19 1 7.7883 4.3065 5.9356 20 1 5.9137 5.5239 4.9951 21 1 5.7372 3.1367 5.3831 22 6 8.8509 0.1792 2.0662 23 6 10.2802 0.4632 1.6821 24 6 10.9716 1.4745 2.3225 25 6 12.2876 1.7243 1.9653 26 6 12.8582 0.9511 0.9654 27 6 12.1032 -0.0393 0.3665 28 7 10.8550 -0.2522 0.7355 29 6 4.4077 0.0990 -0.0006 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8899 33 1 3.4195 4.1124 1.0114 34 1 4.2326 4.4673 -0.5318 35 1 2.6078 3.7405 -0.5285 36 1 6.0876 0.8021 2.1328 37 1 6.6091 -0.7058 1.3439 38 1 9.0052 2.7081 1.3544 39 1 7.3567 2.8659 0.7016 40 1 7.5068 5.8256 2.7863 41 1 8.6781 0.5072 3.0911 42 1 8.6600 -0.8913 1.9902 43 1 10.4937 2.0603 3.0937 44 1 12.8537 2.5050 2.4513 45 1 13.8795 1.1210 0.6585 46 1 12.5404 -0.6460 -0.4127 47 1 4.2723 -0.5054 0.8963 48 1 4.2716 -0.5057 -0.8972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270451624.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:08 Heat of formation + Delta-G solvation = -77.135543 kcal Electronic energy + Delta-G solvation = -31086.839760 eV Core-core repulsion = 26914.240948 eV Total energy + Delta-G solvation = -4172.598812 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -42.34220 -41.09594 -40.91637 -38.31162 -37.52027 -34.61321 -34.07862 -33.65174 -33.18838 -32.16081 -29.86827 -28.96468 -28.38676 -26.73191 -25.60159 -24.34330 -24.18325 -23.43644 -22.49662 -21.58733 -20.64072 -18.81940 -18.42672 -17.95399 -17.48158 -17.45318 -17.24208 -16.78259 -16.64759 -16.37247 -16.16605 -16.06129 -15.61860 -15.10776 -14.68496 -14.46856 -14.34831 -14.20586 -14.11604 -14.06431 -13.84007 -13.74636 -13.42015 -13.29553 -12.93342 -12.93038 -12.82190 -12.65523 -12.54670 -12.40288 -12.30920 -12.21333 -11.85995 -11.76019 -11.65447 -11.61570 -11.34185 -10.68764 -10.48626 -10.24069 -9.80326 -9.37260 -8.97562 -8.07417 -6.22270 0.13274 0.30453 0.49471 1.33543 1.37246 1.43885 1.93642 2.02160 2.27577 2.38978 2.86655 3.19227 3.34937 3.54615 3.59650 3.82547 3.99167 4.02013 4.10583 4.12419 4.31699 4.33076 4.36583 4.37846 4.38559 4.40054 4.49949 4.54600 4.61385 4.68962 4.74725 4.76298 4.86727 4.88078 4.94564 5.01065 5.03126 5.18043 5.18855 5.33671 5.37729 5.42921 5.49963 5.52754 5.88869 5.93541 6.09426 6.13371 6.30255 6.52496 6.88436 6.97128 7.22141 7.46055 8.95222 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.010784 B = 0.003522 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2595.934963 B = 7947.990932 C = 9648.783526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.356 6.356 3 C 0.543 3.457 4 O -0.552 6.552 5 C -0.364 4.364 6 C 0.210 3.790 7 C -0.113 4.113 8 O -0.283 6.283 9 C 0.082 3.918 10 H 0.116 0.884 11 C 0.054 3.946 12 N -0.532 5.532 13 C 0.202 3.798 14 C -0.538 4.538 15 H 0.053 0.947 16 C 0.026 3.974 17 N -0.917 5.917 18 Si 0.933 3.067 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.109 3.891 23 C 0.133 3.867 24 C -0.171 4.171 25 C -0.087 4.087 26 C -0.173 4.173 27 C 0.082 3.918 28 N -0.494 5.494 29 C -0.071 4.071 30 H 0.132 0.868 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.038 0.962 37 H 0.108 0.892 38 H -0.001 1.001 39 H 0.028 0.972 40 H 0.260 0.740 41 H 0.045 0.955 42 H 0.090 0.910 43 H 0.115 0.885 44 H 0.149 0.851 45 H 0.168 0.832 46 H 0.183 0.817 47 H 0.094 0.906 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.585 -11.274 -5.051 12.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.272 6.272 3 C 0.395 3.605 4 O -0.448 6.448 5 C -0.367 4.367 6 C 0.157 3.843 7 C -0.169 4.169 8 O -0.192 6.192 9 C 0.028 3.972 10 H 0.134 0.866 11 C -0.074 4.074 12 N -0.255 5.255 13 C 0.076 3.924 14 C -0.577 4.577 15 H 0.071 0.929 16 C -0.174 4.174 17 N -0.557 5.557 18 Si 0.760 3.240 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.197 1.197 22 C -0.019 4.019 23 C -0.004 4.004 24 C -0.192 4.192 25 C -0.113 4.113 26 C -0.192 4.192 27 C -0.075 4.075 28 N -0.204 5.204 29 C -0.109 4.109 30 H 0.150 0.850 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.101 0.899 35 H 0.133 0.867 36 H 0.056 0.944 37 H 0.126 0.874 38 H 0.017 0.983 39 H 0.046 0.954 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.134 0.866 44 H 0.167 0.833 45 H 0.185 0.815 46 H 0.200 0.800 47 H 0.112 0.888 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -1.888 -11.431 -5.942 13.021 hybrid contribution -0.369 1.702 2.393 2.959 sum -2.257 -9.729 -3.550 10.600 Atomic orbital electron populations 1.23117 0.75788 1.05424 1.02095 1.86182 1.24440 1.32000 1.84599 1.18566 0.87944 0.81453 0.72537 1.90775 1.67513 1.36191 1.50340 1.19554 0.91969 0.96075 1.29134 1.22454 0.83713 0.96995 0.81133 1.21068 1.01784 0.89535 1.04530 1.87042 1.19768 1.29856 1.82512 1.23970 0.96647 0.75900 1.00709 0.86641 1.22409 0.89141 1.00114 0.95762 1.62383 1.06748 1.05349 1.51042 1.19528 0.95155 0.83457 0.94277 1.21795 1.43261 0.91774 1.00851 0.92930 1.25500 0.95762 0.96345 0.99809 1.70051 1.49376 0.98978 1.37275 0.85942 0.78703 0.77470 0.81902 1.20029 1.21285 1.19741 1.20825 0.87575 0.98615 0.94929 1.21095 0.95924 0.91878 0.91535 1.22120 0.96229 0.98564 1.02264 1.21875 0.94162 0.98710 0.96504 1.22439 1.02844 0.96765 0.97180 1.23309 0.89273 0.96326 0.98579 1.67459 1.12367 1.27997 1.12551 1.21459 0.88500 0.95832 1.05106 0.85009 0.92268 0.92791 0.89516 0.89854 0.86693 0.94383 0.87409 0.98269 0.95356 0.93068 0.93662 0.89203 0.86649 0.83290 0.81477 0.79962 0.88782 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.45 113.37 1.18 1.75 16 2 O -0.36 -9.47 10.26 -58.46 -0.60 -10.07 16 3 C 0.54 17.34 7.71 68.64 0.53 17.87 16 4 O -0.55 -19.46 13.80 19.31 0.27 -19.20 16 5 C -0.36 -11.85 6.06 -19.80 -0.12 -11.97 16 6 C 0.21 7.61 7.05 24.69 0.17 7.79 16 7 C -0.11 -3.82 9.62 71.24 0.69 -3.13 16 8 O -0.28 -11.40 8.26 -70.65 -0.58 -11.98 16 9 C 0.08 2.70 4.03 30.99 0.12 2.83 16 10 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 11 C 0.05 1.90 4.48 86.31 0.39 2.29 16 12 N -0.53 -21.69 4.59 -905.35 -4.15 -25.84 16 13 C 0.20 10.11 4.68 85.56 0.40 10.51 16 14 C -0.54 -28.10 7.17 25.60 0.18 -27.92 16 15 H 0.05 2.72 6.08 -2.91 -0.02 2.70 16 16 C 0.03 1.40 5.46 84.66 0.46 1.86 16 17 N -0.92 -52.89 13.28 21.45 0.28 -52.61 16 18 Si 0.93 43.14 29.54 68.60 2.03 45.17 16 19 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 22 C 0.11 4.09 5.14 85.56 0.44 4.53 16 23 C 0.13 4.95 5.83 42.56 0.25 5.20 16 24 C -0.17 -6.29 8.36 22.36 0.19 -6.10 16 25 C -0.09 -2.53 10.18 22.47 0.23 -2.30 16 26 C -0.17 -4.17 10.11 22.36 0.23 -3.94 16 27 C 0.08 2.20 11.18 84.67 0.95 3.14 16 28 N -0.49 -16.87 10.27 -183.88 -1.89 -18.76 16 29 C -0.07 -1.95 6.44 30.48 0.20 -1.76 16 30 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.11 8.13 -2.38 -0.02 1.09 16 32 H 0.05 1.07 8.13 -2.39 -0.02 1.05 16 33 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.08 2.71 8.14 -2.38 -0.02 2.69 16 35 H 0.11 3.65 5.90 -2.39 -0.01 3.64 16 36 H 0.04 1.56 6.20 -2.39 -0.01 1.55 16 37 H 0.11 3.03 7.64 -2.39 -0.02 3.01 16 38 H 0.00 -0.04 6.35 -2.39 -0.02 -0.06 16 39 H 0.03 1.58 5.77 -2.39 -0.01 1.57 16 40 H 0.26 14.38 8.31 -92.71 -0.77 13.60 16 41 H 0.05 1.83 6.28 -2.39 -0.02 1.82 16 42 H 0.09 2.94 7.69 -2.39 -0.02 2.92 16 43 H 0.12 4.72 8.06 -2.91 -0.02 4.70 16 44 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 45 H 0.17 2.62 8.06 -2.91 -0.02 2.60 16 46 H 0.18 3.42 8.06 -2.91 -0.02 3.39 16 47 H 0.09 2.38 7.74 -2.39 -0.02 2.36 16 48 H 0.11 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -68.69 392.42 2.81 -65.88 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.97 Total: 26.76 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: 6.48 Total: 0.64 kcal Atomic # 7 Polarization: -91.44 SS G_CDS: -5.76 Total: -97.20 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.92 Total: -41.25 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -68.69 2.81 -65.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270451624.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.256 kcal (2) G-P(sol) polarization free energy of solvation -68.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds