Wall clock time and date at job start Sat Apr 11 2020 07:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00243 * 2 1 4 4 N 1.46903 * 109.46970 * 124.99982 * 3 2 1 5 5 C 1.46906 * 110.99791 * 298.73003 * 4 3 2 6 6 C 1.50701 * 109.47034 * 160.99737 * 5 4 3 7 7 H 1.07997 * 119.99889 * 4.98152 * 6 5 4 8 8 C 1.37876 * 120.00204 * 184.98869 * 6 5 4 9 9 N 1.31523 * 119.99621 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00175 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47299 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46808 * 120.00058 * 10 8 6 13 13 H 1.48504 * 109.47127 * 240.00182 * 10 8 6 14 14 C 1.46890 * 111.00048 * 174.77668 * 4 3 2 15 15 C 1.50711 * 109.46977 * 293.95200 * 14 4 3 16 16 O 1.21283 * 119.99552 * 359.97438 * 15 14 4 17 17 N 1.34777 * 119.99919 * 180.02562 * 15 14 4 18 18 C 1.39960 * 119.99763 * 174.42793 * 17 15 14 19 19 C 1.38619 * 119.99471 * 335.15770 * 18 17 15 20 20 C 1.39512 * 119.77101 * 179.97438 * 19 18 17 21 21 C 1.47741 * 120.11515 * 180.02562 * 20 19 18 22 22 O 1.21469 * 120.00378 * 0.02562 * 21 20 19 23 23 O 1.34711 * 119.99917 * 180.02562 * 21 20 19 24 24 C 1.45203 * 117.00230 * 179.97438 * 23 21 20 25 25 C 1.39668 * 119.76895 * 0.02562 * 20 19 18 26 26 C 1.37963 * 119.98913 * 359.97438 * 25 20 19 27 27 C 1.38259 * 120.22808 * 359.72986 * 26 25 20 28 28 C 1.50701 * 119.88526 * 180.27445 * 27 26 25 29 29 H 1.08001 * 119.99884 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00451 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99874 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47133 * 5.00247 * 3 2 1 33 33 H 1.08998 * 109.47107 * 245.00188 * 3 2 1 34 34 H 1.09001 * 109.46594 * 280.99143 * 5 4 3 35 35 H 1.08992 * 109.47396 * 40.99103 * 5 4 3 36 36 H 0.96992 * 119.99710 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.47636 * 53.95213 * 14 4 3 38 38 H 1.09000 * 109.47284 * 173.95513 * 14 4 3 39 39 H 0.96996 * 119.99785 * 354.42539 * 17 15 14 40 40 H 1.07998 * 120.11751 * 359.97438 * 19 18 17 41 41 H 1.09010 * 109.46775 * 60.00145 * 24 23 21 42 42 H 1.08998 * 109.47723 * 179.97438 * 24 23 21 43 43 H 1.09000 * 109.47411 * 300.00574 * 24 23 21 44 44 H 1.08000 * 120.00137 * 180.02562 * 25 20 19 45 45 H 1.07999 * 119.88586 * 180.02562 * 26 25 20 46 46 H 1.09002 * 109.46985 * 270.26630 * 28 27 26 47 47 H 1.08993 * 109.47292 * 30.27252 * 28 27 26 48 48 H 1.08997 * 109.47399 * 150.27398 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 2.2758 1.2328 2.4109 6 6 3.2297 0.7988 3.4939 7 1 4.2821 0.6929 3.2758 8 6 2.7589 0.5369 4.7630 9 7 1.4773 0.6663 5.0286 10 14 3.9412 -0.0017 6.1052 11 1 5.3183 -0.0698 5.5538 12 1 3.9030 0.9779 7.2207 13 1 3.5421 -1.3407 6.6083 14 6 3.8369 2.5359 1.0966 15 6 4.7399 2.4804 -0.1087 16 8 4.6885 1.5309 -0.8616 17 7 5.6052 3.4853 -0.3493 18 6 6.5239 3.3812 -1.4000 19 6 6.9177 2.1324 -1.8551 20 6 7.8333 2.0340 -2.9031 21 6 8.2578 0.7070 -3.3944 22 8 7.8092 -0.3010 -2.8862 23 8 9.1424 0.6147 -4.4062 24 6 9.5145 -0.7211 -4.8368 25 6 8.3472 3.1945 -3.4862 26 6 7.9486 4.4324 -3.0256 27 6 7.0365 4.5296 -1.9911 28 6 6.6018 5.8857 -1.4982 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.8541 2.2049 2.6664 35 1 1.4731 0.5013 2.3192 36 1 1.1461 0.4825 5.9215 37 1 3.2026 3.4202 1.0349 38 1 4.4420 2.5853 2.0019 39 1 5.5913 4.2806 0.2057 40 1 6.5171 1.2387 -1.3999 41 1 8.6261 -1.2545 -5.1750 42 1 10.2305 -0.6527 -5.6558 43 1 9.9659 -1.2591 -4.0031 44 1 9.0559 3.1227 -4.2980 45 1 8.3467 5.3286 -3.4780 46 1 7.2707 6.2149 -0.7030 47 1 6.6365 6.5996 -2.3210 48 1 5.5837 5.8235 -1.1139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292278650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:51 Heat of formation + Delta-G solvation = -56.355697 kcal Electronic energy + Delta-G solvation = -30069.229733 eV Core-core repulsion = 25897.532003 eV Total energy + Delta-G solvation = -4171.697730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.97707 -40.21976 -38.68805 -36.68463 -36.52137 -34.85517 -33.10504 -32.92104 -32.28651 -30.28030 -28.74331 -27.85148 -27.14973 -26.67634 -24.01104 -23.33911 -22.82873 -21.19374 -20.76600 -20.06400 -19.07118 -18.42185 -17.41942 -16.82527 -16.49148 -16.47059 -16.22509 -15.59312 -15.40586 -15.22018 -14.56856 -14.41122 -14.27577 -14.07759 -13.90506 -13.72047 -13.50388 -13.46814 -13.30138 -12.78533 -12.52274 -12.33501 -12.27067 -12.15139 -11.90937 -11.62329 -11.57258 -11.33913 -11.16240 -10.96181 -10.73260 -10.68291 -10.63835 -10.51051 -10.41458 -9.99827 -9.51314 -9.21958 -9.01455 -8.67062 -8.41131 -8.16853 -7.33238 -6.03982 -4.05674 0.51348 1.17617 2.34074 2.48141 2.83094 2.89438 3.03699 3.30031 3.38287 3.43327 3.64588 4.41795 4.45762 4.53032 4.71190 4.84021 4.88431 4.91981 4.99335 4.99449 5.12509 5.19437 5.27633 5.32020 5.33143 5.43218 5.54755 5.66169 5.74253 5.77032 5.78376 5.95272 5.98162 6.13487 6.14537 6.16978 6.23524 6.27330 6.36032 6.51652 6.82044 7.12139 7.20781 7.23193 7.36342 7.38498 7.64666 7.79374 8.02915 8.12617 8.29518 8.49016 9.01933 9.58668 11.06367 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009946 B = 0.002704 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.527476 B =10351.765719 C =10593.356167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.115 4.115 3 C 0.074 3.926 4 N -0.515 5.515 5 C 0.191 3.809 6 C -0.507 4.507 7 H 0.063 0.937 8 C 0.056 3.944 9 N -0.897 5.897 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.048 3.952 15 C 0.510 3.490 16 O -0.493 6.493 17 N -0.678 5.678 18 C 0.150 3.850 19 C -0.065 4.065 20 C -0.112 4.112 21 C 0.506 3.494 22 O -0.493 6.493 23 O -0.358 6.358 24 C 0.037 3.963 25 C -0.085 4.085 26 C -0.114 4.114 27 C -0.088 4.088 28 C -0.120 4.120 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.020 0.980 33 H 0.085 0.915 34 H -0.011 1.011 35 H 0.047 0.953 36 H 0.261 0.739 37 H 0.054 0.946 38 H 0.118 0.882 39 H 0.412 0.588 40 H 0.165 0.835 41 H 0.064 0.936 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.136 0.864 45 H 0.133 0.867 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.247 10.363 -18.202 24.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.133 4.133 3 C -0.053 4.053 4 N -0.239 5.239 5 C 0.067 3.933 6 C -0.546 4.546 7 H 0.081 0.919 8 C -0.145 4.145 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.210 1.210 14 C -0.083 4.083 15 C 0.299 3.701 16 O -0.365 6.365 17 N -0.324 5.324 18 C 0.054 3.946 19 C -0.086 4.086 20 C -0.114 4.114 21 C 0.351 3.649 22 O -0.381 6.381 23 O -0.275 6.275 24 C -0.057 4.057 25 C -0.105 4.105 26 C -0.133 4.133 27 C -0.091 4.091 28 C -0.176 4.176 29 H 0.107 0.893 30 H 0.111 0.889 31 H 0.129 0.871 32 H 0.038 0.962 33 H 0.103 0.897 34 H 0.007 0.993 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.135 0.865 39 H 0.249 0.751 40 H 0.183 0.817 41 H 0.082 0.918 42 H 0.120 0.880 43 H 0.082 0.918 44 H 0.154 0.846 45 H 0.151 0.849 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 13.181 8.862 -18.409 24.314 hybrid contribution 0.019 0.518 1.205 1.311 sum 13.199 9.379 -17.204 23.626 Atomic orbital electron populations 1.23644 0.95903 1.01056 1.04231 1.22784 0.95225 0.98838 0.96453 1.21375 0.93825 0.94087 0.96055 1.61872 1.23161 1.34467 1.04433 1.19865 0.94045 0.96133 0.83296 1.21196 0.94746 1.45182 0.93486 0.91893 1.24974 0.95160 0.95668 0.98688 1.69969 1.12850 1.49591 1.21236 0.86473 0.81268 0.78290 0.81595 1.19647 1.21150 1.20979 1.21896 0.96460 0.94293 0.95692 1.21494 0.80036 0.81347 0.87223 1.90649 1.66757 1.32127 1.46972 1.43778 1.34427 1.22271 1.31897 1.17447 0.92725 0.92938 0.91467 1.21614 0.93425 0.98742 0.94774 1.18887 1.01973 0.90260 1.00281 1.21205 0.76373 0.89920 0.77441 1.90898 1.53142 1.37924 1.56125 1.86517 1.57748 1.33787 1.49431 1.23275 1.01013 0.81073 1.00364 1.21330 0.98763 0.91225 0.99147 1.20767 0.97950 0.97642 0.96892 1.19912 0.98526 0.94386 0.96303 1.20819 1.01775 0.92947 1.02104 0.89339 0.88908 0.87117 0.96181 0.89657 0.99283 0.93516 0.92965 0.92809 0.86451 0.75141 0.81728 0.91756 0.88046 0.91772 0.84592 0.84914 0.90483 0.90694 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.68 14.27 29.01 0.41 -3.26 16 2 C -0.11 -2.22 8.18 -36.03 -0.29 -2.52 16 3 C 0.07 1.45 5.07 -4.97 -0.03 1.42 16 4 N -0.51 -11.14 4.20 -238.96 -1.00 -12.14 16 5 C 0.19 4.86 4.62 -4.97 -0.02 4.84 16 6 C -0.51 -13.99 8.60 -34.44 -0.30 -14.29 16 7 H 0.06 1.73 7.61 -52.49 -0.40 1.33 16 8 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 9 N -0.90 -26.30 13.29 55.43 0.74 -25.57 16 10 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 C 0.05 0.85 5.28 -4.98 -0.03 0.82 16 15 C 0.51 8.34 7.31 -10.98 -0.08 8.26 16 16 O -0.49 -9.73 11.51 5.55 0.06 -9.66 16 17 N -0.68 -8.38 4.96 -9.89 -0.05 -8.43 16 18 C 0.15 1.91 6.41 -83.74 -0.54 1.37 16 19 C -0.07 -0.99 8.26 -38.97 -0.32 -1.31 16 20 C -0.11 -1.50 5.87 -105.00 -0.62 -2.11 16 21 C 0.51 7.24 7.90 34.61 0.27 7.51 16 22 O -0.49 -8.74 16.13 -19.24 -0.31 -9.05 16 23 O -0.36 -4.06 9.81 -40.52 -0.40 -4.45 16 24 C 0.04 0.31 10.56 101.05 1.07 1.37 16 25 C -0.09 -0.86 9.61 -39.15 -0.38 -1.23 16 26 C -0.11 -0.98 9.67 -39.67 -0.38 -1.37 16 27 C -0.09 -0.85 5.90 -104.35 -0.62 -1.47 16 28 C -0.12 -0.78 9.44 36.01 0.34 -0.44 16 29 H 0.09 1.46 7.84 -52.49 -0.41 1.05 16 30 H 0.09 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.11 2.22 8.06 -52.49 -0.42 1.79 16 32 H 0.02 0.38 7.79 -51.93 -0.40 -0.03 16 33 H 0.09 1.66 5.81 -51.93 -0.30 1.36 16 34 H -0.01 -0.28 8.01 -51.93 -0.42 -0.70 16 35 H 0.05 1.30 6.59 -51.93 -0.34 0.95 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 38 H 0.12 2.10 7.26 -51.93 -0.38 1.72 16 39 H 0.41 3.70 7.40 -40.82 -0.30 3.40 16 40 H 0.17 3.06 5.38 -52.49 -0.28 2.78 16 41 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 42 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.14 1.08 7.61 -52.49 -0.40 0.68 16 45 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 48 H 0.07 0.44 6.97 -51.93 -0.36 0.08 16 LS Contribution 402.69 15.07 6.07 6.07 Total: -1.00 -34.62 402.69 -8.44 -43.06 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.93 Total: 4.60 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.60 Total: -0.91 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.32 Total: -46.14 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.64 Total: -23.16 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.62 -8.44 -43.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292278650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.291 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds