Wall clock time and date at job start Sat Apr 11 2020 07:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50701 * 120.00243 * 2 1 4 4 N 1.46903 * 109.46970 * 124.99982 * 3 2 1 5 5 C 1.46906 * 110.99791 * 298.73003 * 4 3 2 6 6 C 1.50701 * 109.47034 * 160.99737 * 5 4 3 7 7 H 1.07997 * 119.99889 * 4.98152 * 6 5 4 8 8 C 1.37876 * 120.00204 * 184.98869 * 6 5 4 9 9 N 1.31523 * 119.99621 * 359.97438 * 8 6 5 10 10 Si 1.86796 * 120.00175 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47299 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46808 * 120.00058 * 10 8 6 13 13 H 1.48504 * 109.47127 * 240.00182 * 10 8 6 14 14 C 1.46890 * 111.00048 * 174.77668 * 4 3 2 15 15 C 1.50711 * 109.46977 * 293.95200 * 14 4 3 16 16 O 1.21283 * 119.99552 * 359.97438 * 15 14 4 17 17 N 1.34777 * 119.99919 * 180.02562 * 15 14 4 18 18 C 1.39960 * 119.99763 * 174.42793 * 17 15 14 19 19 C 1.38619 * 119.99471 * 335.15770 * 18 17 15 20 20 C 1.39512 * 119.77101 * 179.97438 * 19 18 17 21 21 C 1.47741 * 120.11515 * 180.02562 * 20 19 18 22 22 O 1.21469 * 120.00378 * 0.02562 * 21 20 19 23 23 O 1.34711 * 119.99917 * 180.02562 * 21 20 19 24 24 C 1.45203 * 117.00230 * 179.97438 * 23 21 20 25 25 C 1.39668 * 119.76895 * 0.02562 * 20 19 18 26 26 C 1.37963 * 119.98913 * 359.97438 * 25 20 19 27 27 C 1.38259 * 120.22808 * 359.72986 * 26 25 20 28 28 C 1.50701 * 119.88526 * 180.27445 * 27 26 25 29 29 H 1.08001 * 119.99884 * 0.02562 * 1 2 3 30 30 H 1.08001 * 120.00451 * 179.97438 * 1 2 3 31 31 H 1.08002 * 119.99874 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47133 * 5.00247 * 3 2 1 33 33 H 1.08998 * 109.47107 * 245.00188 * 3 2 1 34 34 H 1.09001 * 109.46594 * 280.99143 * 5 4 3 35 35 H 1.08992 * 109.47396 * 40.99103 * 5 4 3 36 36 H 0.96992 * 119.99710 * 180.02562 * 9 8 6 37 37 H 1.09003 * 109.47636 * 53.95213 * 14 4 3 38 38 H 1.09000 * 109.47284 * 173.95513 * 14 4 3 39 39 H 0.96996 * 119.99785 * 354.42539 * 17 15 14 40 40 H 1.07998 * 120.11751 * 359.97438 * 19 18 17 41 41 H 1.09010 * 109.46775 * 60.00145 * 24 23 21 42 42 H 1.08998 * 109.47723 * 179.97438 * 24 23 21 43 43 H 1.09000 * 109.47411 * 300.00574 * 24 23 21 44 44 H 1.08000 * 120.00137 * 180.02562 * 25 20 19 45 45 H 1.07999 * 119.88586 * 180.02562 * 26 25 20 46 46 H 1.09002 * 109.46985 * 270.26630 * 28 27 26 47 47 H 1.08993 * 109.47292 * 30.27252 * 28 27 26 48 48 H 1.08997 * 109.47399 * 150.27398 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9964 1.3319 1.1345 5 6 2.2758 1.2328 2.4109 6 6 3.2297 0.7988 3.4939 7 1 4.2821 0.6929 3.2758 8 6 2.7589 0.5369 4.7630 9 7 1.4773 0.6663 5.0286 10 14 3.9412 -0.0017 6.1052 11 1 5.3183 -0.0698 5.5538 12 1 3.9030 0.9779 7.2207 13 1 3.5421 -1.3407 6.6083 14 6 3.8369 2.5359 1.0966 15 6 4.7399 2.4804 -0.1087 16 8 4.6885 1.5309 -0.8616 17 7 5.6052 3.4853 -0.3493 18 6 6.5239 3.3812 -1.4000 19 6 6.9177 2.1324 -1.8551 20 6 7.8333 2.0340 -2.9031 21 6 8.2578 0.7070 -3.3944 22 8 7.8092 -0.3010 -2.8862 23 8 9.1424 0.6147 -4.4062 24 6 9.5145 -0.7211 -4.8368 25 6 8.3472 3.1945 -3.4862 26 6 7.9486 4.4324 -3.0256 27 6 7.0365 4.5296 -1.9911 28 6 6.6018 5.8857 -1.4982 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6213 1.4026 -0.9314 34 1 1.8541 2.2049 2.6664 35 1 1.4731 0.5013 2.3192 36 1 1.1461 0.4825 5.9215 37 1 3.2026 3.4202 1.0349 38 1 4.4420 2.5853 2.0019 39 1 5.5913 4.2806 0.2057 40 1 6.5171 1.2387 -1.3999 41 1 8.6261 -1.2545 -5.1750 42 1 10.2305 -0.6527 -5.6558 43 1 9.9659 -1.2591 -4.0031 44 1 9.0559 3.1227 -4.2980 45 1 8.3467 5.3286 -3.4780 46 1 7.2707 6.2149 -0.7030 47 1 6.6365 6.5996 -2.3210 48 1 5.5837 5.8235 -1.1139 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292278650.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:51:50 Heat of formation + Delta-G solvation = -78.868646 kcal Electronic energy + Delta-G solvation = -30070.205968 eV Core-core repulsion = 25897.532003 eV Total energy + Delta-G solvation = -4172.673965 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.03063 -41.34018 -39.80519 -38.22528 -37.57597 -35.97860 -34.96608 -34.05506 -33.76050 -31.36472 -29.62674 -29.47433 -28.52059 -27.60380 -25.78467 -24.43640 -23.79904 -22.70698 -21.78054 -21.34470 -20.62173 -19.45166 -18.55643 -18.53568 -17.97526 -17.45874 -17.32220 -16.92109 -16.64545 -16.31113 -16.21897 -15.80391 -15.50016 -15.41377 -14.83754 -14.81173 -14.72557 -14.49734 -14.34776 -14.18329 -14.04118 -13.42101 -13.34593 -13.14526 -13.02836 -12.94856 -12.79359 -12.69862 -12.58283 -12.53178 -12.42565 -12.12683 -11.88291 -11.84323 -11.76389 -11.57265 -11.34228 -10.77629 -10.61721 -10.13395 -9.87263 -9.16246 -9.01828 -8.18662 -6.27980 -0.41268 0.24689 1.30601 1.38921 1.39527 1.42459 1.54429 1.56035 1.64441 1.92322 2.40939 2.73271 3.13009 3.35176 3.60080 3.67459 3.85172 3.92011 4.06202 4.14482 4.21451 4.27337 4.28543 4.28591 4.35020 4.39564 4.50667 4.64377 4.65734 4.70563 4.73506 4.85173 4.88598 5.01789 5.05546 5.15220 5.24447 5.24942 5.28565 5.30021 5.36631 5.43226 5.63059 5.71418 5.83522 5.89166 6.08675 6.19304 6.44158 6.56740 6.61410 6.86559 7.10052 7.41058 8.91658 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009946 B = 0.002704 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2814.527476 B =10351.765719 C =10593.356167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.147 4.147 3 C 0.082 3.918 4 N -0.534 5.534 5 C 0.210 3.790 6 C -0.521 4.521 7 H 0.056 0.944 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.963 3.037 11 H -0.269 1.269 12 H -0.273 1.273 13 H -0.283 1.283 14 C 0.048 3.952 15 C 0.515 3.485 16 O -0.533 6.533 17 N -0.658 5.658 18 C 0.127 3.873 19 C -0.095 4.095 20 C -0.137 4.137 21 C 0.506 3.494 22 O -0.544 6.544 23 O -0.349 6.349 24 C 0.028 3.972 25 C -0.069 4.069 26 C -0.104 4.104 27 C -0.070 4.070 28 C -0.122 4.122 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.030 0.970 33 H 0.084 0.916 34 H -0.026 1.026 35 H 0.019 0.981 36 H 0.264 0.736 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.429 0.571 40 H 0.119 0.881 41 H 0.057 0.943 42 H 0.144 0.856 43 H 0.059 0.941 44 H 0.163 0.837 45 H 0.179 0.821 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.092 13.511 -19.364 28.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.166 4.166 3 C -0.045 4.045 4 N -0.259 5.259 5 C 0.085 3.915 6 C -0.559 4.559 7 H 0.074 0.926 8 C -0.191 4.191 9 N -0.570 5.570 10 Si 0.788 3.212 11 H -0.193 1.193 12 H -0.198 1.198 13 H -0.209 1.209 14 C -0.083 4.083 15 C 0.304 3.696 16 O -0.409 6.409 17 N -0.305 5.305 18 C 0.032 3.968 19 C -0.116 4.116 20 C -0.138 4.138 21 C 0.353 3.647 22 O -0.435 6.435 23 O -0.265 6.265 24 C -0.065 4.065 25 C -0.088 4.088 26 C -0.122 4.122 27 C -0.073 4.073 28 C -0.178 4.178 29 H 0.120 0.880 30 H 0.128 0.872 31 H 0.113 0.887 32 H 0.048 0.952 33 H 0.102 0.898 34 H -0.008 1.008 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.129 0.871 39 H 0.269 0.731 40 H 0.137 0.863 41 H 0.076 0.924 42 H 0.162 0.838 43 H 0.078 0.922 44 H 0.181 0.819 45 H 0.196 0.804 46 H 0.115 0.885 47 H 0.117 0.883 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.070 12.073 -19.597 27.512 hybrid contribution -0.498 -0.403 1.432 1.569 sum 14.572 11.670 -18.165 26.048 Atomic orbital electron populations 1.23885 0.95192 1.02512 1.01125 1.22787 0.96144 0.98307 0.99353 1.21304 0.93610 0.94496 0.95060 1.61696 1.23571 1.37216 1.03416 1.19451 0.93126 0.94233 0.84724 1.21454 0.94772 1.45220 0.94484 0.92553 1.25788 0.96759 0.95589 1.00954 1.70075 1.14533 1.50458 1.21966 0.85434 0.79077 0.77900 0.78795 1.19294 1.19828 1.20882 1.21892 0.96467 0.93709 0.96237 1.21161 0.80381 0.81652 0.86449 1.90660 1.68069 1.33878 1.48251 1.43411 1.33272 1.21723 1.32093 1.17586 0.93617 0.93305 0.92282 1.21340 0.95403 0.98337 0.96473 1.18958 1.02947 0.91044 1.00877 1.21569 0.75959 0.89915 0.77299 1.90868 1.55150 1.39590 1.57936 1.86505 1.56548 1.35354 1.48098 1.23612 1.01637 0.79833 1.01411 1.21676 0.97895 0.90457 0.98738 1.21308 0.96544 0.98541 0.95767 1.20344 0.97006 0.94656 0.95272 1.20968 1.02098 0.91129 1.03585 0.88029 0.87174 0.88704 0.95177 0.89804 1.00833 0.96276 0.92692 0.90187 0.87052 0.73090 0.86328 0.92412 0.83848 0.92243 0.81936 0.80370 0.88545 0.88256 0.91285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -6.63 14.27 67.78 0.97 -5.66 16 2 C -0.15 -5.96 8.18 25.65 0.21 -5.75 16 3 C 0.08 3.34 5.07 85.56 0.43 3.78 16 4 N -0.53 -24.13 4.20 -909.92 -3.82 -27.95 16 5 C 0.21 11.10 4.62 85.56 0.39 11.49 16 6 C -0.52 -29.51 8.60 25.60 0.22 -29.29 16 7 H 0.06 3.20 7.61 -2.91 -0.02 3.18 16 8 C 0.01 0.42 5.46 84.65 0.46 0.88 16 9 N -0.93 -55.35 13.29 21.45 0.28 -55.06 16 10 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 11 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 13 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 14 C 0.05 1.73 5.28 85.56 0.45 2.19 16 15 C 0.52 17.53 7.31 87.66 0.64 18.17 16 16 O -0.53 -22.60 11.51 -3.04 -0.03 -22.64 16 17 N -0.66 -16.17 4.96 -303.59 -1.51 -17.68 16 18 C 0.13 3.18 6.41 38.11 0.24 3.43 16 19 C -0.09 -3.04 8.26 22.67 0.19 -2.85 16 20 C -0.14 -3.70 5.87 -20.11 -0.12 -3.82 16 21 C 0.51 15.18 7.90 70.33 0.56 15.74 16 22 O -0.54 -21.05 16.13 19.94 0.32 -20.73 16 23 O -0.35 -7.76 9.81 -56.21 -0.55 -8.31 16 24 C 0.03 0.46 10.56 113.37 1.20 1.66 16 25 C -0.07 -1.20 9.61 22.55 0.22 -0.98 16 26 C -0.10 -1.33 9.67 22.21 0.21 -1.12 16 27 C -0.07 -1.13 5.90 -19.69 -0.12 -1.24 16 28 C -0.12 -1.02 9.44 71.24 0.67 -0.35 16 29 H 0.10 3.27 7.84 -2.91 -0.02 3.25 16 30 H 0.11 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.09 4.07 8.06 -2.91 -0.02 4.05 16 32 H 0.03 1.14 7.79 -2.39 -0.02 1.12 16 33 H 0.08 3.43 5.81 -2.39 -0.01 3.41 16 34 H -0.03 -1.42 8.01 -2.39 -0.02 -1.44 16 35 H 0.02 1.11 6.59 -2.39 -0.02 1.09 16 36 H 0.26 14.78 8.31 -92.71 -0.77 14.00 16 37 H 0.08 2.44 8.12 -2.39 -0.02 2.42 16 38 H 0.11 4.11 7.26 -2.39 -0.02 4.09 16 39 H 0.43 7.11 7.40 -92.71 -0.69 6.43 16 40 H 0.12 4.95 5.38 -2.91 -0.02 4.93 16 41 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 42 H 0.14 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.16 1.93 7.61 -2.91 -0.02 1.91 16 45 H 0.18 0.78 8.06 -2.91 -0.02 0.76 16 46 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 47 H 0.10 0.44 8.08 -2.39 -0.02 0.42 16 48 H 0.07 0.63 6.97 -2.39 -0.02 0.61 16 Total: -1.00 -81.19 402.69 3.85 -77.34 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.29 Total: 22.17 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 6.84 Total: 6.26 kcal Atomic # 7 Polarization: -95.65 SS G_CDS: -5.04 Total: -100.69 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -0.26 Total: -51.68 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -81.19 3.85 -77.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292278650.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.531 kcal (2) G-P(sol) polarization free energy of solvation -81.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds