Wall clock time and date at job start Sat Apr 11 2020 07:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47252 * 2 1 4 4 C 1.52996 * 109.47332 * 120.00046 * 2 1 3 5 5 C 1.53005 * 109.46990 * 59.99793 * 4 2 1 6 6 C 1.52999 * 109.46691 * 60.00390 * 5 4 2 7 7 N 1.46500 * 109.47520 * 60.00168 * 6 5 4 8 8 S 1.65594 * 119.99984 * 52.87478 * 7 6 5 9 9 O 1.42107 * 104.27688 * 176.61646 * 8 7 6 10 10 O 1.42093 * 104.27977 * 304.47194 * 8 7 6 11 11 C 1.81403 * 104.45148 * 60.54699 * 8 7 6 12 12 C 1.52994 * 109.47561 * 174.36524 * 11 8 7 13 13 C 1.52989 * 109.47431 * 179.97438 * 12 11 8 14 14 C 1.50700 * 109.47611 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99585 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00424 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99645 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99982 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47284 * 60.00131 * 18 16 14 20 20 H 1.48500 * 109.47177 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47205 * 299.99920 * 18 16 14 22 22 C 1.50705 * 109.47151 * 180.02562 * 6 5 4 23 23 N 1.34770 * 120.00190 * 201.67949 * 22 6 5 24 24 O 1.21284 * 119.99449 * 21.67388 * 22 6 5 25 25 C 1.53008 * 109.47293 * 299.99719 * 6 5 4 26 26 C 1.52999 * 109.47382 * 240.00289 * 2 1 3 27 27 H 1.08999 * 109.47458 * 300.00310 * 1 2 3 28 28 H 1.09007 * 109.47406 * 59.99743 * 1 2 3 29 29 H 1.09003 * 109.47513 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47438 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47291 * 299.99974 * 3 2 1 32 32 H 1.08996 * 109.46782 * 60.00157 * 3 2 1 33 33 H 1.08996 * 109.47277 * 300.00195 * 4 2 1 34 34 H 1.09001 * 109.47815 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.46750 * 179.97438 * 5 4 2 36 36 H 1.08992 * 109.47080 * 300.00635 * 5 4 2 37 37 H 0.97004 * 120.00031 * 232.87782 * 7 6 5 38 38 H 1.09000 * 109.46795 * 294.36528 * 11 8 7 39 39 H 1.09002 * 109.47191 * 54.35765 * 11 8 7 40 40 H 1.09003 * 109.46684 * 300.00166 * 12 11 8 41 41 H 1.09004 * 109.47086 * 59.99767 * 12 11 8 42 42 H 1.09003 * 109.47498 * 299.99882 * 13 12 11 43 43 H 1.09004 * 109.47000 * 59.99930 * 13 12 11 44 44 H 0.97000 * 119.99564 * 179.97438 * 17 16 14 45 45 H 0.97006 * 120.00344 * 4.91536 * 23 22 6 46 46 H 0.97006 * 120.00064 * 184.91797 * 23 22 6 47 47 H 1.08999 * 109.46766 * 180.02562 * 25 6 5 48 48 H 1.08994 * 109.46764 * 300.00523 * 25 6 5 49 49 H 1.09004 * 109.47660 * 179.97438 * 26 2 1 50 50 H 1.09002 * 109.47165 * 60.00024 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0400 -2.8849 -0.0001 7 7 3.5050 -2.8850 -0.0001 8 16 4.3329 -3.4426 1.3212 9 8 5.6987 -3.3683 0.9359 10 8 3.8332 -2.6661 2.4012 11 6 3.8112 -5.1722 1.4856 12 6 4.6188 -5.8451 2.5972 13 6 4.1783 -7.3036 2.7363 14 6 4.9742 -7.9667 3.8308 15 1 5.7194 -7.4039 4.3732 16 6 4.7503 -9.2914 4.1403 17 7 3.8425 -9.9766 3.4801 18 14 5.7365 -10.1130 5.4975 19 1 5.5033 -9.4008 6.7794 20 1 5.3090 -11.5288 5.6324 21 1 7.1816 -10.0630 5.1591 22 6 1.5371 -4.3056 -0.0005 23 7 2.1757 -5.2463 -0.7242 24 8 0.5578 -4.6024 0.6506 25 6 1.5299 -2.1637 -1.2494 26 6 2.0400 -0.7212 -1.2493 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -0.2075 2.1392 34 1 3.1300 -0.7217 1.2490 35 1 1.8937 -2.6777 2.1389 36 1 0.4400 -2.1637 1.2491 37 1 3.9900 -2.5584 -0.7740 38 1 2.7504 -5.2096 1.7336 39 1 3.9828 -5.6945 0.5445 40 1 5.6796 -5.8076 2.3492 41 1 4.4470 -5.3227 3.5384 42 1 3.1175 -7.3407 2.9845 43 1 4.3497 -7.8262 1.7952 44 1 3.6852 -10.9087 3.6976 45 1 2.9990 -5.0259 -1.1875 46 1 1.8119 -6.1437 -0.7819 47 1 1.8930 -2.6778 -2.1393 48 1 0.4400 -2.1637 -1.2493 49 1 3.1300 -0.7208 -1.2495 50 1 1.6767 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340086970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:08 Heat of formation + Delta-G solvation = -132.884679 kcal Electronic energy + Delta-G solvation = -31179.418337 eV Core-core repulsion = 27139.846013 eV Total energy + Delta-G solvation = -4039.572324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.13226 -38.75258 -37.00721 -35.86707 -35.48107 -34.76327 -33.60112 -32.16149 -31.23075 -30.82556 -27.83790 -27.50550 -26.94554 -23.81827 -23.10432 -22.70212 -20.83976 -20.35963 -19.41445 -18.45397 -18.03394 -17.66434 -17.01719 -16.61162 -16.03007 -15.79521 -15.29009 -15.04533 -14.92490 -14.55941 -14.51272 -14.47780 -14.14804 -13.79831 -13.49986 -12.99052 -12.61713 -12.54965 -12.31921 -12.28282 -12.24698 -12.05199 -11.94532 -11.82679 -11.76872 -11.71130 -11.35785 -11.22403 -11.08915 -10.93115 -10.91433 -10.89190 -10.60370 -10.47830 -10.38013 -10.02243 -9.97221 -9.72472 -9.57453 -9.32302 -9.11880 -8.40394 -6.05476 -4.08688 0.33330 2.20633 2.76684 3.21468 3.32046 3.35995 3.39055 3.79092 4.25123 4.28134 4.35705 4.42328 4.45599 4.64623 4.72298 4.77181 4.95999 5.08584 5.12382 5.14776 5.21395 5.27043 5.30938 5.39819 5.44943 5.54191 5.58488 5.61993 5.73200 5.75857 5.82433 5.84748 5.90178 6.01868 6.12885 6.22080 6.23561 6.28189 6.40724 6.45997 6.63584 6.70385 6.85537 7.09133 7.56268 7.66987 7.92211 8.03044 8.32484 8.97149 9.55916 11.05639 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.003021 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.780233 B = 9267.345270 C = 9750.789981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.071 4.071 3 C -0.140 4.140 4 C -0.095 4.095 5 C -0.135 4.135 6 C 0.169 3.831 7 N -1.114 6.114 8 S 2.589 3.411 9 O -0.960 6.960 10 O -0.948 6.948 11 C -0.614 4.614 12 C -0.103 4.103 13 C 0.034 3.966 14 C -0.527 4.527 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C 0.499 3.501 23 N -0.850 5.850 24 O -0.520 6.520 25 C -0.111 4.111 26 C -0.105 4.105 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.418 0.582 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.019 0.981 44 H 0.262 0.738 45 H 0.401 0.599 46 H 0.409 0.591 47 H 0.074 0.926 48 H 0.087 0.913 49 H 0.068 0.932 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.657 20.036 -14.624 25.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.133 4.133 5 C -0.174 4.174 6 C 0.076 3.924 7 N -0.873 5.873 8 S 2.686 3.314 9 O -0.950 6.950 10 O -0.937 6.937 11 C -0.746 4.746 12 C -0.142 4.142 13 C -0.004 4.004 14 C -0.566 4.566 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.201 1.201 22 C 0.280 3.720 23 N -0.415 5.415 24 O -0.394 6.394 25 C -0.150 4.150 26 C -0.143 4.143 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.253 0.747 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.072 0.928 45 H 0.231 0.769 46 H 0.241 0.759 47 H 0.093 0.907 48 H 0.106 0.894 49 H 0.086 0.914 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.898 20.329 -13.487 25.099 hybrid contribution 0.573 -1.360 -0.236 1.494 sum -5.325 18.969 -13.724 24.011 Atomic orbital electron populations 1.21998 0.94657 1.02208 1.01533 1.20637 0.95740 0.95209 0.95531 1.21847 1.01028 0.95317 1.01580 1.21472 1.01435 0.93818 0.96527 1.22205 1.02341 0.96713 0.96114 1.20448 0.79967 0.91670 1.00286 1.55944 1.13668 1.80843 1.36855 1.05694 0.73810 0.78155 0.73734 1.93589 1.32165 1.87234 1.81997 1.93580 1.79919 1.66537 1.53697 1.30852 1.11977 1.21633 1.10118 1.21489 0.97803 1.01279 0.93631 1.19024 0.97008 0.87110 0.97305 1.21207 1.20912 0.95924 1.18537 0.92456 1.25012 0.95308 0.97414 0.96573 1.69948 1.32909 1.09388 1.41080 0.86620 0.80429 0.78341 0.82427 1.20102 1.21242 1.20139 1.21052 0.84122 0.87815 0.78997 1.44076 1.29295 1.14780 1.53391 1.90819 1.26407 1.81505 1.40636 1.21764 1.02351 0.96192 0.94715 1.21571 1.01009 0.93871 0.97801 0.92588 0.92986 0.91887 0.92657 0.92880 0.92576 0.91375 0.91130 0.88210 0.89443 0.74703 0.85275 0.85175 0.91498 0.91740 0.96074 0.96228 0.92844 0.76948 0.75881 0.90693 0.89450 0.91357 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 7.78 37.15 0.29 -0.81 16 2 C -0.07 -0.56 0.77 -154.51 -0.12 -0.68 16 3 C -0.14 -1.01 8.47 37.16 0.31 -0.70 16 4 C -0.09 -1.00 4.12 -26.73 -0.11 -1.11 16 5 C -0.13 -1.59 3.37 -26.73 -0.09 -1.68 16 6 C 0.17 1.66 0.67 -132.96 -0.09 1.57 16 7 N -1.11 -10.45 3.61 -0.40 0.00 -10.45 16 8 S 2.59 36.12 5.31 -107.50 -0.57 35.55 16 9 O -0.96 -15.81 18.08 -57.54 -1.04 -16.85 16 10 O -0.95 -15.41 13.28 -57.54 -0.76 -16.18 16 11 C -0.61 -9.53 4.16 37.15 0.15 -9.37 16 12 C -0.10 -2.08 5.16 -26.74 -0.14 -2.21 16 13 C 0.03 0.86 4.97 -27.89 -0.14 0.72 16 14 C -0.53 -14.89 9.11 -34.44 -0.31 -15.21 16 15 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 18 Si 0.89 21.68 29.54 -169.99 -5.02 16.65 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.50 5.85 4.23 -10.99 -0.05 5.80 16 23 N -0.85 -7.65 6.58 31.22 0.21 -7.45 16 24 O -0.52 -8.26 16.73 5.55 0.09 -8.16 16 25 C -0.11 -0.79 4.46 -26.73 -0.12 -0.91 16 26 C -0.10 -0.69 4.56 -26.73 -0.12 -0.82 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.50 4.81 -51.93 -0.25 0.26 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.81 6.53 -51.93 -0.34 0.47 16 35 H 0.10 1.43 5.65 -51.93 -0.29 1.14 16 36 H 0.09 1.01 6.17 -51.93 -0.32 0.69 16 37 H 0.42 2.76 7.68 -34.47 -0.26 2.50 16 38 H 0.13 2.07 6.19 -51.92 -0.32 1.75 16 39 H 0.13 1.69 6.49 -51.92 -0.34 1.35 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.40 2.52 7.77 -40.82 -0.32 2.21 16 46 H 0.41 3.68 8.93 -40.82 -0.36 3.32 16 47 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 48 H 0.09 0.64 6.43 -51.93 -0.33 0.30 16 49 H 0.07 0.43 7.02 -51.93 -0.36 0.07 16 50 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -36.03 382.44 -9.34 -45.37 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -8.12 Total: 5.46 kcal Atomic # 6 Polarization: -23.20 SS G_CDS: -0.62 Total: -23.82 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.94 Total: -43.78 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.71 Total: -41.19 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 36.12 SS G_CDS: -0.57 Total: 35.55 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -36.03 -9.34 -45.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340086970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.515 kcal (2) G-P(sol) polarization free energy of solvation -36.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds