Wall clock time and date at job start Sat Apr 11 2020 07:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47252 * 2 1 4 4 C 1.52996 * 109.47332 * 120.00046 * 2 1 3 5 5 C 1.53005 * 109.46990 * 59.99793 * 4 2 1 6 6 C 1.52999 * 109.46691 * 60.00390 * 5 4 2 7 7 N 1.46500 * 109.47520 * 60.00168 * 6 5 4 8 8 S 1.65594 * 119.99984 * 52.87478 * 7 6 5 9 9 O 1.42107 * 104.27688 * 176.61646 * 8 7 6 10 10 O 1.42093 * 104.27977 * 304.47194 * 8 7 6 11 11 C 1.81403 * 104.45148 * 60.54699 * 8 7 6 12 12 C 1.52994 * 109.47561 * 174.36524 * 11 8 7 13 13 C 1.52989 * 109.47431 * 179.97438 * 12 11 8 14 14 C 1.50700 * 109.47611 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99585 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00424 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99645 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99982 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47284 * 60.00131 * 18 16 14 20 20 H 1.48500 * 109.47177 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47205 * 299.99920 * 18 16 14 22 22 C 1.50705 * 109.47151 * 180.02562 * 6 5 4 23 23 N 1.34770 * 120.00190 * 201.67949 * 22 6 5 24 24 O 1.21284 * 119.99449 * 21.67388 * 22 6 5 25 25 C 1.53008 * 109.47293 * 299.99719 * 6 5 4 26 26 C 1.52999 * 109.47382 * 240.00289 * 2 1 3 27 27 H 1.08999 * 109.47458 * 300.00310 * 1 2 3 28 28 H 1.09007 * 109.47406 * 59.99743 * 1 2 3 29 29 H 1.09003 * 109.47513 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47438 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47291 * 299.99974 * 3 2 1 32 32 H 1.08996 * 109.46782 * 60.00157 * 3 2 1 33 33 H 1.08996 * 109.47277 * 300.00195 * 4 2 1 34 34 H 1.09001 * 109.47815 * 179.97438 * 4 2 1 35 35 H 1.09000 * 109.46750 * 179.97438 * 5 4 2 36 36 H 1.08992 * 109.47080 * 300.00635 * 5 4 2 37 37 H 0.97004 * 120.00031 * 232.87782 * 7 6 5 38 38 H 1.09000 * 109.46795 * 294.36528 * 11 8 7 39 39 H 1.09002 * 109.47191 * 54.35765 * 11 8 7 40 40 H 1.09003 * 109.46684 * 300.00166 * 12 11 8 41 41 H 1.09004 * 109.47086 * 59.99767 * 12 11 8 42 42 H 1.09003 * 109.47498 * 299.99882 * 13 12 11 43 43 H 1.09004 * 109.47000 * 59.99930 * 13 12 11 44 44 H 0.97000 * 119.99564 * 179.97438 * 17 16 14 45 45 H 0.97006 * 120.00344 * 4.91536 * 23 22 6 46 46 H 0.97006 * 120.00064 * 184.91797 * 23 22 6 47 47 H 1.08999 * 109.46766 * 180.02562 * 25 6 5 48 48 H 1.08994 * 109.46764 * 300.00523 * 25 6 5 49 49 H 1.09004 * 109.47660 * 179.97438 * 26 2 1 50 50 H 1.09002 * 109.47165 * 60.00024 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5299 -2.1638 1.2492 6 6 2.0400 -2.8849 -0.0001 7 7 3.5050 -2.8850 -0.0001 8 16 4.3329 -3.4426 1.3212 9 8 5.6987 -3.3683 0.9359 10 8 3.8332 -2.6661 2.4012 11 6 3.8112 -5.1722 1.4856 12 6 4.6188 -5.8451 2.5972 13 6 4.1783 -7.3036 2.7363 14 6 4.9742 -7.9667 3.8308 15 1 5.7194 -7.4039 4.3732 16 6 4.7503 -9.2914 4.1403 17 7 3.8425 -9.9766 3.4801 18 14 5.7365 -10.1130 5.4975 19 1 5.5033 -9.4008 6.7794 20 1 5.3090 -11.5288 5.6324 21 1 7.1816 -10.0630 5.1591 22 6 1.5371 -4.3056 -0.0005 23 7 2.1757 -5.2463 -0.7242 24 8 0.5578 -4.6024 0.6506 25 6 1.5299 -2.1637 -1.2494 26 6 2.0400 -0.7212 -1.2493 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6766 -0.2075 2.1392 34 1 3.1300 -0.7217 1.2490 35 1 1.8937 -2.6777 2.1389 36 1 0.4400 -2.1637 1.2491 37 1 3.9900 -2.5584 -0.7740 38 1 2.7504 -5.2096 1.7336 39 1 3.9828 -5.6945 0.5445 40 1 5.6796 -5.8076 2.3492 41 1 4.4470 -5.3227 3.5384 42 1 3.1175 -7.3407 2.9845 43 1 4.3497 -7.8262 1.7952 44 1 3.6852 -10.9087 3.6976 45 1 2.9990 -5.0259 -1.1875 46 1 1.8119 -6.1437 -0.7819 47 1 1.8930 -2.6778 -2.1393 48 1 0.4400 -2.1637 -1.2493 49 1 3.1300 -0.7208 -1.2495 50 1 1.6767 -0.2073 -2.1392 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340086970.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:07 Heat of formation + Delta-G solvation = -160.680444 kcal Electronic energy + Delta-G solvation = -31180.623652 eV Core-core repulsion = 27139.846013 eV Total energy + Delta-G solvation = -4040.777639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.98185 -39.60224 -38.25664 -37.12711 -36.54524 -36.35656 -34.63173 -34.05830 -31.90507 -31.69282 -29.69538 -28.09671 -27.67680 -25.69320 -23.87225 -23.50099 -22.50092 -21.38691 -20.43967 -19.28549 -18.97315 -18.74317 -18.57874 -17.84027 -17.32364 -17.02979 -16.52388 -16.25719 -15.92241 -15.87410 -15.59275 -15.37561 -15.15459 -14.64069 -14.45402 -14.33025 -14.01816 -13.82165 -13.57420 -13.41351 -13.24648 -13.17901 -13.01242 -12.98350 -12.76081 -12.69406 -12.64103 -12.50867 -12.42902 -12.23344 -12.09321 -11.95657 -11.80917 -11.77361 -11.43381 -11.29344 -11.14416 -11.00899 -10.78639 -10.64656 -10.59017 -10.36720 -8.24258 -6.35709 -0.87278 1.24255 1.38458 1.41259 1.49117 1.73273 2.34784 2.38204 2.61108 3.09111 3.13819 3.49064 3.56438 3.66297 3.75791 3.81219 3.97240 4.04716 4.07793 4.29022 4.32060 4.42204 4.54668 4.57977 4.59213 4.68868 4.85537 4.89294 4.91961 4.96789 5.01987 5.02931 5.10167 5.14403 5.24626 5.26690 5.28761 5.41971 5.42830 5.52704 5.56760 5.59248 5.70129 5.76647 5.79653 6.01810 6.17001 6.30373 6.79520 7.18087 7.33657 8.87015 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.020347 B = 0.003021 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.780233 B = 9267.345270 C = 9750.789981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 C -0.139 4.139 4 C -0.095 4.095 5 C -0.139 4.139 6 C 0.175 3.825 7 N -1.090 6.090 8 S 2.620 3.380 9 O -0.978 6.978 10 O -0.969 6.969 11 C -0.620 4.620 12 C -0.101 4.101 13 C 0.037 3.963 14 C -0.554 4.554 15 H 0.061 0.939 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.963 3.037 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.264 1.264 22 C 0.496 3.504 23 N -0.837 5.837 24 O -0.567 6.567 25 C -0.108 4.108 26 C -0.104 4.104 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.436 0.564 38 H 0.122 0.878 39 H 0.155 0.845 40 H 0.073 0.927 41 H 0.059 0.941 42 H -0.008 1.008 43 H 0.007 0.993 44 H 0.265 0.735 45 H 0.416 0.584 46 H 0.411 0.589 47 H 0.104 0.896 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.777 21.294 -16.552 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.070 4.070 3 C -0.196 4.196 4 C -0.133 4.133 5 C -0.179 4.179 6 C 0.082 3.918 7 N -0.854 5.854 8 S 2.715 3.285 9 O -0.968 6.968 10 O -0.959 6.959 11 C -0.749 4.749 12 C -0.141 4.141 13 C -0.001 4.001 14 C -0.592 4.592 15 H 0.079 0.921 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.787 3.213 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.189 1.189 22 C 0.278 3.722 23 N -0.403 5.403 24 O -0.445 6.445 25 C -0.147 4.147 26 C -0.142 4.142 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.276 0.724 38 H 0.140 0.860 39 H 0.172 0.828 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.011 0.989 43 H 0.026 0.974 44 H 0.074 0.926 45 H 0.249 0.751 46 H 0.243 0.757 47 H 0.122 0.878 48 H 0.107 0.893 49 H 0.094 0.906 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.965 21.579 -15.448 26.998 hybrid contribution 0.246 -1.728 0.347 1.780 sum -4.719 19.850 -15.101 25.384 Atomic orbital electron populations 1.21985 0.94384 1.01875 1.02045 1.20632 0.95949 0.95556 0.94831 1.21835 1.00936 0.94764 1.02111 1.21469 1.00705 0.93214 0.97866 1.22177 1.02304 0.97524 0.95848 1.20426 0.79456 0.90731 1.01161 1.55433 1.13550 1.79921 1.36511 1.04601 0.73118 0.76835 0.73961 1.93562 1.33608 1.87123 1.82500 1.93571 1.80256 1.66516 1.55545 1.30873 1.10754 1.23769 1.09551 1.21275 0.98853 0.98492 0.95439 1.18886 0.95032 0.90277 0.95933 1.21705 1.21395 0.96677 1.19461 0.92102 1.25942 0.96358 0.98159 0.99061 1.70069 1.34336 1.09781 1.42672 0.85534 0.79221 0.77291 0.79253 1.19416 1.20605 1.18921 1.21370 0.83609 0.88726 0.78451 1.44021 1.29428 1.14461 1.52353 1.90803 1.28691 1.82265 1.42727 1.21849 1.02500 0.96505 0.93816 1.21621 1.01514 0.93255 0.97775 0.93256 0.91331 0.92637 0.92785 0.91283 0.93171 0.92474 0.92124 0.91328 0.89683 0.72370 0.85999 0.82754 0.90795 0.92230 0.98917 0.97438 0.92634 0.75148 0.75703 0.87805 0.89311 0.90597 0.88992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 7.78 71.98 0.56 -1.39 16 2 C -0.07 -0.97 0.77 -52.18 -0.04 -1.01 16 3 C -0.14 -1.71 8.47 71.98 0.61 -1.10 16 4 C -0.09 -1.96 4.12 30.59 0.13 -1.83 16 5 C -0.14 -3.32 3.37 30.60 0.10 -3.22 16 6 C 0.17 3.21 0.67 2.86 0.00 3.21 16 7 N -1.09 -18.37 3.61 -155.17 -0.56 -18.93 16 8 S 2.62 71.24 5.31 -56.49 -0.30 70.94 16 9 O -0.98 -30.73 18.08 -127.65 -2.31 -33.03 16 10 O -0.97 -31.84 13.28 -127.65 -1.70 -33.54 16 11 C -0.62 -19.30 4.16 71.98 0.30 -19.00 16 12 C -0.10 -4.19 5.16 30.59 0.16 -4.03 16 13 C 0.04 1.94 4.97 29.84 0.15 2.08 16 14 C -0.55 -31.88 9.11 25.60 0.23 -31.65 16 15 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 16 C 0.00 0.18 5.46 84.65 0.46 0.65 16 17 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 18 Si 0.96 44.56 29.54 68.60 2.03 46.58 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 21 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 22 C 0.50 11.37 4.23 87.66 0.37 11.74 16 23 N -0.84 -14.00 6.58 -173.53 -1.14 -15.14 16 24 O -0.57 -18.50 16.73 -3.04 -0.05 -18.56 16 25 C -0.11 -1.20 4.46 30.60 0.14 -1.06 16 26 C -0.10 -1.01 4.56 30.59 0.14 -0.87 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.05 0.83 4.81 -2.39 -0.01 0.82 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.25 16 34 H 0.06 1.36 6.53 -2.39 -0.02 1.34 16 35 H 0.07 2.07 5.65 -2.39 -0.01 2.06 16 36 H 0.08 2.04 6.17 -2.39 -0.01 2.02 16 37 H 0.44 4.30 7.68 -96.74 -0.74 3.56 16 38 H 0.12 4.04 6.19 -2.39 -0.01 4.03 16 39 H 0.15 3.88 6.49 -2.39 -0.02 3.86 16 40 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 45 H 0.42 4.21 7.77 -92.70 -0.72 3.49 16 46 H 0.41 7.07 8.93 -92.70 -0.83 6.25 16 47 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.09 1.06 6.43 -2.39 -0.02 1.05 16 49 H 0.08 0.65 7.02 -2.39 -0.02 0.63 16 50 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -80.00 382.44 -1.75 -81.75 By element: Atomic # 1 Polarization: 24.72 SS G_CDS: -1.31 Total: 23.41 kcal Atomic # 6 Polarization: -50.79 SS G_CDS: 3.31 Total: -47.48 kcal Atomic # 7 Polarization: -88.66 SS G_CDS: -1.42 Total: -90.08 kcal Atomic # 8 Polarization: -81.07 SS G_CDS: -4.05 Total: -85.12 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 71.24 SS G_CDS: -0.30 Total: 70.94 kcal Total: -80.00 -1.75 -81.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340086970.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.930 kcal (2) G-P(sol) polarization free energy of solvation -80.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds