Wall clock time and date at job start Sat Apr 11 2020 07:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38166 * 120.03077 * 2 1 4 4 C 1.38237 * 120.05797 * 179.73691 * 3 2 1 5 5 C 1.38294 * 120.11173 * 0.28484 * 4 3 2 6 6 C 1.38122 * 120.05286 * 359.97438 * 5 4 3 7 7 C 1.38708 * 120.02517 * 180.27462 * 2 1 3 8 8 O 1.35897 * 120.06199 * 359.97438 * 7 2 1 9 9 C 1.42902 * 117.00369 * 174.76487 * 8 7 2 10 10 H 1.08997 * 109.47142 * 324.94528 * 9 8 7 11 11 C 1.52999 * 109.46685 * 84.94777 * 9 8 7 12 12 C 1.50700 * 109.46964 * 204.94566 * 9 8 7 13 13 O 1.21273 * 120.00360 * 344.63608 * 12 9 8 14 14 N 1.34781 * 119.99498 * 164.64422 * 12 9 8 15 15 C 1.46962 * 120.59601 * 4.69842 * 14 12 9 16 16 C 1.53815 * 108.39536 * 124.75974 * 15 14 12 17 17 N 1.46969 * 108.57643 * 49.64201 * 16 15 14 18 18 C 1.34779 * 120.59451 * 124.62467 * 17 16 15 19 19 O 1.21686 * 120.00073 * 185.27038 * 18 17 16 20 20 C 1.46371 * 119.99794 * 5.26555 * 18 17 16 21 21 H 1.08002 * 120.00054 * 9.16801 * 20 18 17 22 22 C 1.40051 * 119.99946 * 189.15466 * 20 18 17 23 23 N 1.30675 * 120.00110 * 0.02562 * 22 20 18 24 24 Si 1.86795 * 120.00040 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47305 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47188 * 120.00583 * 24 22 20 27 27 H 1.48503 * 109.47121 * 239.99974 * 24 22 20 28 28 C 1.46961 * 118.81140 * 304.64441 * 17 16 15 29 29 C 1.46965 * 120.58846 * 184.98696 * 14 12 9 30 30 H 1.09002 * 109.47369 * 89.99579 * 1 2 3 31 31 H 1.08994 * 109.47053 * 209.99653 * 1 2 3 32 32 H 1.08998 * 109.47231 * 329.99951 * 1 2 3 33 33 H 1.08003 * 119.97003 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.94651 * 180.25338 * 4 3 2 35 35 H 1.08000 * 119.96969 * 179.97438 * 5 4 3 36 36 H 1.08003 * 120.02662 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.46840 * 184.29025 * 11 9 8 38 38 H 1.09004 * 109.47008 * 304.28775 * 11 9 8 39 39 H 1.08996 * 109.47309 * 64.28842 * 11 9 8 40 40 H 1.08994 * 109.61324 * 244.54146 * 15 14 12 41 41 H 1.09002 * 109.60822 * 5.06209 * 15 14 12 42 42 H 1.09004 * 109.74488 * 289.85377 * 16 15 14 43 43 H 1.09005 * 109.53353 * 169.30373 * 16 15 14 44 44 H 0.96997 * 120.00413 * 180.02562 * 23 22 20 45 45 H 1.09006 * 109.61425 * 295.48242 * 28 17 16 46 46 H 1.09003 * 109.61007 * 174.97204 * 28 17 16 47 47 H 1.08997 * 109.61478 * 354.94268 * 29 14 12 48 48 H 1.09000 * 109.61275 * 115.45654 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1962 0.0000 4 6 3.5809 1.1968 0.0055 5 6 4.2752 0.0009 0.0051 6 6 3.5887 -1.1976 -0.0003 7 6 2.2011 -1.2009 -0.0058 8 8 1.5234 -2.3789 -0.0109 9 6 2.2988 -3.5730 -0.1328 10 1 3.1525 -3.3869 -0.7844 11 6 2.7959 -4.0015 1.2493 12 6 1.4464 -4.6674 -0.7217 13 8 0.2400 -4.5471 -0.7511 14 7 2.0250 -5.7801 -1.2155 15 6 3.4750 -5.9861 -1.0942 16 6 3.7169 -7.3362 -0.3981 17 7 2.9098 -8.3623 -1.0731 18 6 3.4884 -9.4745 -1.5678 19 8 2.8276 -10.2709 -2.2079 20 6 4.9117 -9.7244 -1.3350 21 1 5.4641 -9.1009 -0.6476 22 6 5.5572 -10.7722 -2.0035 23 7 4.8889 -11.5264 -2.8354 24 14 7.3734 -11.0915 -1.7059 25 1 7.8958 -10.1045 -0.7271 26 1 7.5532 -12.4645 -1.1693 27 1 8.1155 -10.9593 -2.9855 28 6 1.4606 -8.1536 -1.1994 29 6 1.2178 -6.8061 -1.8905 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3633 0.8900 0.5138 33 1 1.6585 2.1315 0.0004 34 1 4.1195 2.1329 0.0096 35 1 5.3552 0.0041 0.0089 36 1 4.1314 -2.1314 -0.0011 37 1 3.4495 -4.8678 1.1477 38 1 3.3486 -3.1811 1.7071 39 1 1.9438 -4.2608 1.8776 40 1 3.9273 -5.9966 -2.0858 41 1 3.9101 -5.1830 -0.4993 42 1 3.4216 -7.2687 0.6490 43 1 4.7729 -7.5976 -0.4669 44 1 5.3359 -12.2524 -3.2982 45 1 1.0045 -8.1444 -0.2094 46 1 1.0264 -8.9549 -1.7974 47 1 0.1618 -6.5447 -1.8218 48 1 1.5130 -6.8736 -2.9376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356834497.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:52:12 Heat of formation + Delta-G solvation = -88.048428 kcal Electronic energy + Delta-G solvation = -30732.959570 eV Core-core repulsion = 26559.887540 eV Total energy + Delta-G solvation = -4173.072030 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.96435 -40.89657 -39.69967 -38.37219 -37.54144 -34.99275 -34.53761 -33.99867 -33.16272 -31.80376 -30.84962 -29.21499 -27.94962 -27.68374 -25.73633 -24.73960 -23.95686 -22.91233 -22.43547 -21.48698 -20.03519 -19.26413 -18.64309 -17.95149 -17.63822 -17.21712 -16.87008 -16.55231 -16.47676 -16.15971 -16.12495 -15.84705 -15.72701 -15.39587 -15.04617 -14.73000 -14.57617 -14.14368 -14.04889 -13.97353 -13.65321 -13.51141 -13.41952 -13.16223 -13.12506 -13.06081 -12.81581 -12.77631 -12.73840 -12.33813 -12.30759 -12.20811 -12.06239 -12.00495 -11.91319 -11.69920 -10.94436 -10.86756 -10.16314 -9.79417 -9.73737 -9.08076 -9.04095 -8.28488 -6.82306 0.40203 0.49347 1.30965 1.41856 1.43459 1.45266 1.61606 2.24164 2.38409 2.47520 2.79585 2.83572 3.18737 3.59154 3.60739 3.81167 3.88816 3.89272 3.90888 3.95710 4.09954 4.23185 4.26352 4.34418 4.41691 4.44157 4.44359 4.57518 4.62539 4.64561 4.71752 4.76240 4.77747 4.78587 4.83694 4.99648 5.00770 5.14409 5.27239 5.31747 5.40543 5.43114 5.54876 5.63556 5.71507 5.87945 6.11755 6.17594 6.34866 6.42235 6.89789 6.92692 7.39751 8.45970 8.67982 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.017532 B = 0.002459 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1596.716601 B =11384.141541 C =12618.289928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.138 4.138 3 C -0.088 4.088 4 C -0.157 4.157 5 C -0.088 4.088 6 C -0.213 4.213 7 C 0.102 3.898 8 O -0.309 6.309 9 C 0.073 3.927 10 H 0.120 0.880 11 C -0.175 4.175 12 C 0.518 3.482 13 O -0.568 6.568 14 N -0.599 5.599 15 C 0.087 3.913 16 C 0.103 3.897 17 N -0.645 5.645 18 C 0.542 3.458 19 O -0.633 6.633 20 C -0.562 4.562 21 H 0.102 0.898 22 C 0.028 3.972 23 N -0.826 5.826 24 Si 0.995 3.005 25 H -0.237 1.237 26 H -0.277 1.277 27 H -0.271 1.271 28 C 0.111 3.889 29 C 0.112 3.888 30 H 0.063 0.937 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.148 0.852 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.078 0.922 41 H 0.131 0.869 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.273 0.727 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 25.708 8.290 27.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.138 4.138 3 C -0.106 4.106 4 C -0.175 4.175 5 C -0.106 4.106 6 C -0.231 4.231 7 C 0.057 3.943 8 O -0.222 6.222 9 C 0.013 3.987 10 H 0.138 0.862 11 C -0.232 4.232 12 C 0.306 3.694 13 O -0.446 6.446 14 N -0.333 5.333 15 C -0.036 4.036 16 C -0.020 4.020 17 N -0.382 5.382 18 C 0.349 3.651 19 O -0.520 6.520 20 C -0.598 4.598 21 H 0.120 0.880 22 C -0.187 4.187 23 N -0.455 5.455 24 Si 0.814 3.186 25 H -0.159 1.159 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.014 4.014 29 C -0.011 4.011 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.166 0.834 34 H 0.166 0.834 35 H 0.168 0.832 36 H 0.164 0.836 37 H 0.122 0.878 38 H 0.114 0.886 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.149 0.851 42 H 0.087 0.913 43 H 0.127 0.873 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.113 0.887 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.447 25.166 7.833 26.470 hybrid contribution 0.203 -0.977 -0.340 1.054 sum 2.651 24.190 7.492 25.462 Atomic orbital electron populations 1.20589 0.90600 1.02729 1.02158 1.19577 0.97018 0.90964 1.06277 1.21187 0.94830 0.96776 0.97815 1.21433 0.94068 0.99282 1.02703 1.21317 1.01232 0.91380 0.96700 1.21548 0.92145 1.01053 1.08367 1.19196 0.91562 0.85123 0.98390 1.86157 1.35869 1.12129 1.88060 1.22261 0.93311 0.82781 1.00314 0.86224 1.22451 1.02754 1.04536 0.93435 1.20661 0.88243 0.83054 0.77461 1.90682 1.16338 1.79862 1.57747 1.48015 1.09584 1.18995 1.56661 1.22697 0.78708 0.99081 1.03087 1.22150 0.98188 0.86197 0.95489 1.48048 1.06169 1.21808 1.62143 1.18766 0.89094 0.79355 0.77908 1.90555 1.66345 1.48910 1.46162 1.21486 0.93266 1.16793 1.28258 0.87989 1.27005 1.05302 0.93850 0.92524 1.70190 1.39231 1.14637 1.21491 0.85004 0.75238 0.79043 0.79265 1.15933 1.20222 1.19648 1.21492 0.83898 0.96201 0.99789 1.21835 0.96889 0.86680 0.95742 0.91816 0.93033 0.89761 0.83427 0.83445 0.83184 0.83558 0.87794 0.88607 0.92100 0.90372 0.85085 0.91261 0.87276 0.91721 0.92417 0.91416 0.88747 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 9.79 71.24 0.70 -1.34 16 2 C -0.14 -2.80 5.89 -19.77 -0.12 -2.92 16 3 C -0.09 -1.34 9.70 22.25 0.22 -1.12 16 4 C -0.16 -2.01 10.04 22.28 0.22 -1.79 16 5 C -0.09 -1.16 10.04 22.26 0.22 -0.94 16 6 C -0.21 -3.48 8.22 22.37 0.18 -3.30 16 7 C 0.10 2.23 6.56 22.51 0.15 2.38 16 8 O -0.31 -8.06 8.43 -73.82 -0.62 -8.69 16 9 C 0.07 1.56 1.78 29.85 0.05 1.61 16 10 H 0.12 1.94 5.46 -2.39 -0.01 1.92 16 11 C -0.17 -2.83 8.79 71.98 0.63 -2.20 16 12 C 0.52 15.20 7.01 87.66 0.61 15.82 16 13 O -0.57 -21.57 15.98 15.56 0.25 -21.32 16 14 N -0.60 -17.05 2.94 -817.16 -2.40 -19.45 16 15 C 0.09 2.02 5.89 86.57 0.51 2.53 16 16 C 0.10 3.09 6.48 86.56 0.56 3.65 16 17 N -0.64 -27.28 2.95 -822.20 -2.42 -29.70 16 18 C 0.54 29.77 7.60 86.36 0.66 30.42 16 19 O -0.63 -41.27 14.49 -4.30 -0.06 -41.33 16 20 C -0.56 -29.15 8.72 24.83 0.22 -28.93 16 21 H 0.10 4.52 5.90 -2.91 -0.02 4.50 16 22 C 0.03 1.48 5.50 85.30 0.47 1.94 16 23 N -0.83 -48.90 11.87 21.84 0.26 -48.64 16 24 Si 0.99 38.06 29.56 68.60 2.03 40.09 16 25 H -0.24 -7.97 7.11 99.48 0.71 -7.27 16 26 H -0.28 -10.56 7.11 99.48 0.71 -9.85 16 27 H -0.27 -10.09 7.11 99.48 0.71 -9.39 16 28 C 0.11 4.33 6.60 86.42 0.57 4.90 16 29 C 0.11 3.75 6.60 86.42 0.57 4.32 16 30 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.05 1.22 7.54 -2.39 -0.02 1.20 16 32 H 0.08 1.22 8.09 -2.39 -0.02 1.20 16 33 H 0.15 1.50 8.06 -2.91 -0.02 1.48 16 34 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.15 1.16 8.06 -2.91 -0.02 1.13 16 36 H 0.15 1.75 5.49 -2.91 -0.02 1.74 16 37 H 0.10 1.29 6.02 -2.39 -0.01 1.28 16 38 H 0.10 1.22 6.96 -2.38 -0.02 1.20 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 40 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.13 1.85 4.29 -2.39 -0.01 1.84 16 42 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.11 3.26 5.44 -2.38 -0.01 3.25 16 44 H 0.27 14.70 8.29 -92.71 -0.77 13.93 16 45 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 46 H 0.07 3.04 6.99 -2.39 -0.02 3.03 16 47 H 0.09 3.16 6.99 -2.39 -0.02 3.14 16 48 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -82.58 383.23 4.45 -78.13 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: 0.99 Total: 25.87 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: 6.43 Total: 25.04 kcal Atomic # 7 Polarization: -93.22 SS G_CDS: -4.57 Total: -97.79 kcal Atomic # 8 Polarization: -70.91 SS G_CDS: -0.44 Total: -71.34 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 2.03 Total: 40.09 kcal Total: -82.58 4.45 -78.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356834497.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.918 kcal (2) G-P(sol) polarization free energy of solvation -82.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds