Wall clock time and date at job start Sat Apr 11 2020 07:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.36661 * 119.77850 * 2 1 4 4 C 1.39661 * 119.71157 * 179.97438 * 3 2 1 5 5 C 1.46251 * 134.19352 * 179.97438 * 4 3 2 6 6 C 1.35811 * 106.08102 * 180.02562 * 5 4 3 7 7 C 1.46974 * 125.12843 * 179.97438 * 6 5 4 8 8 O 1.21651 * 120.00040 * 353.19503 * 7 6 5 9 9 N 1.34773 * 120.00026 * 173.20429 * 7 6 5 10 10 C 1.46504 * 120.00121 * 3.26390 * 9 7 6 11 11 C 1.46501 * 119.99969 * 183.26575 * 9 7 6 12 12 C 1.53001 * 109.47026 * 89.99987 * 11 9 7 13 13 H 1.09004 * 109.47045 * 60.00057 * 12 11 9 14 14 O 1.42899 * 109.47368 * 299.99924 * 12 11 9 15 15 C 1.53003 * 109.47311 * 179.97438 * 12 11 9 16 16 N 1.46498 * 109.47073 * 184.99809 * 15 12 11 17 17 C 1.36937 * 119.99721 * 180.02562 * 16 15 12 18 18 H 1.08001 * 119.99966 * 359.97438 * 17 16 15 19 19 C 1.38813 * 120.00085 * 180.02562 * 17 16 15 20 20 N 1.31617 * 119.99909 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00008 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47048 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47022 * 209.99413 * 21 19 17 24 24 H 1.48493 * 109.47466 * 329.99519 * 21 19 17 25 25 O 1.34955 * 109.74400 * 359.97438 * 6 5 4 26 26 C 1.34717 * 110.86201 * 0.02562 * 25 6 5 27 27 C 1.38987 * 133.24424 * 179.97438 * 26 25 6 28 28 C 1.37847 * 119.85238 * 179.78990 * 27 26 25 29 29 C 1.50695 * 119.62780 * 180.25697 * 28 27 26 30 30 H 1.09003 * 109.46978 * 90.00055 * 1 2 3 31 31 H 1.08999 * 109.47162 * 209.99701 * 1 2 3 32 32 H 1.09003 * 109.47088 * 330.00271 * 1 2 3 33 33 H 1.07996 * 120.14432 * 359.95491 * 3 2 1 34 34 H 1.07993 * 126.96146 * 0.02562 * 5 4 3 35 35 H 1.09002 * 109.46666 * 84.00601 * 10 9 7 36 36 H 1.09000 * 109.47386 * 204.00526 * 10 9 7 37 37 H 1.09000 * 109.47067 * 324.00621 * 10 9 7 38 38 H 1.09000 * 109.47028 * 209.99718 * 11 9 7 39 39 H 1.08995 * 109.47079 * 329.99859 * 11 9 7 40 40 H 0.96704 * 114.00206 * 300.00440 * 14 12 11 41 41 H 1.08996 * 109.46857 * 305.00177 * 15 12 11 42 42 H 1.08996 * 109.46596 * 64.99953 * 15 12 11 43 43 H 0.96997 * 120.00349 * 0.02562 * 16 15 12 44 44 H 0.97004 * 120.00416 * 180.02562 * 20 19 17 45 45 H 1.07998 * 120.07946 * 0.04270 * 27 26 25 46 46 H 1.09003 * 109.47515 * 270.22250 * 29 28 27 47 47 H 1.08999 * 109.47333 * 30.22956 * 29 28 27 48 48 H 1.09004 * 109.47069 * 150.22673 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1857 1.1862 0.0000 4 6 3.5823 1.1845 0.0005 5 6 4.6030 2.2319 0.0002 6 6 5.8002 1.5906 0.0005 7 6 7.1133 2.2508 -0.0001 8 8 7.1868 3.4585 -0.1259 9 7 8.2360 1.5181 0.1384 10 6 8.1524 0.0576 0.2178 11 6 9.5399 2.1822 0.2096 12 6 9.8722 2.4983 1.6692 13 1 9.9042 1.5722 2.2433 14 8 8.8687 3.3598 2.2105 15 6 11.2343 3.1913 1.7437 16 7 11.6067 3.3865 3.1470 17 6 12.7937 3.9921 3.4625 18 1 13.4554 4.3253 2.6767 19 6 13.1469 4.1767 4.7922 20 7 12.3407 3.7701 5.7497 21 14 14.7665 5.0021 5.2224 22 1 14.5609 6.4687 5.3318 23 1 15.2623 4.4738 6.5187 24 1 15.7638 4.7200 4.1590 25 8 5.6022 0.2556 0.0016 26 6 4.2866 -0.0343 0.0014 27 6 3.5745 -1.2279 0.0017 28 6 2.1963 -1.2047 0.0058 29 6 1.4293 -2.5018 0.0120 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6445 2.1207 -0.0007 34 1 4.4382 3.2992 -0.0002 35 1 8.1111 -0.3591 -0.7886 36 1 9.0304 -0.3289 0.7353 37 1 7.2537 -0.2256 0.7655 38 1 10.3053 1.5250 -0.2032 39 1 9.5078 3.1082 -0.3645 40 1 8.7843 4.2047 1.7476 41 1 11.9842 2.5722 1.2515 42 1 11.1773 4.1587 1.2449 43 1 11.0125 3.0869 3.8528 44 1 12.5873 3.8994 6.6790 45 1 4.0998 -2.1715 0.0029 46 1 1.2447 -2.8198 -1.0141 47 1 2.0103 -3.2650 0.5299 48 1 0.4781 -2.3591 0.5248 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755793798.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:26 Heat of formation + Delta-G solvation = -39.002288 kcal Electronic energy + Delta-G solvation = -29659.666234 eV Core-core repulsion = 25488.721005 eV Total energy + Delta-G solvation = -4170.945230 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.79014 -39.95943 -38.92967 -37.31352 -35.43298 -33.97908 -33.66860 -32.63272 -31.47348 -31.22081 -29.60609 -27.54679 -27.27623 -26.94631 -25.34287 -23.43676 -22.57028 -21.73068 -21.66733 -21.09883 -19.83051 -17.81428 -17.60138 -17.14378 -16.80123 -16.56299 -15.85274 -15.66889 -15.50767 -15.11726 -14.89566 -14.52733 -14.40637 -14.37182 -13.95925 -13.63311 -13.47111 -13.27223 -13.22928 -13.14266 -12.93934 -12.85705 -12.51967 -12.48336 -12.18379 -12.09421 -11.81569 -11.75034 -11.49900 -11.25129 -10.92642 -10.79716 -10.69792 -10.36824 -10.34751 -10.14269 -9.76622 -9.63580 -8.87303 -8.74868 -8.68500 -8.37691 -6.89641 -5.72435 -3.01942 0.30079 0.98375 1.59821 2.19555 2.80910 3.06302 3.28501 3.45720 3.50208 3.52262 3.99888 4.27125 4.36364 4.57154 4.58972 4.62363 4.73283 4.76442 4.87058 5.00104 5.03671 5.06770 5.11607 5.16472 5.23897 5.25296 5.31126 5.36651 5.40582 5.52445 5.55341 5.59014 5.64837 5.66658 5.73061 5.87366 5.89968 5.99695 6.04523 6.16435 6.21433 6.27758 6.38628 6.54012 6.73339 6.77176 7.15141 7.71125 7.90054 8.18913 8.45695 9.56946 10.14981 10.50549 11.49968 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.023510 B = 0.001844 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.685926 B =15180.356810 C =15272.237113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.106 4.106 3 C -0.058 4.058 4 C -0.142 4.142 5 C -0.115 4.115 6 C -0.017 4.017 7 C 0.603 3.397 8 O -0.512 6.512 9 N -0.596 5.596 10 C 0.072 3.928 11 C 0.084 3.916 12 C 0.085 3.915 13 H 0.097 0.903 14 O -0.548 6.548 15 C 0.127 3.873 16 N -0.725 5.725 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.930 5.930 21 Si 0.908 3.092 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.282 1.282 25 O -0.178 6.178 26 C 0.062 3.938 27 C -0.110 4.110 28 C -0.052 4.052 29 C -0.118 4.118 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.130 0.870 34 H 0.169 0.831 35 H 0.059 0.941 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.374 0.626 41 H 0.025 0.975 42 H 0.022 0.978 43 H 0.388 0.612 44 H 0.255 0.745 45 H 0.134 0.866 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.695 -13.723 -16.786 32.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.107 4.107 3 C -0.076 4.076 4 C -0.143 4.143 5 C -0.135 4.135 6 C -0.067 4.067 7 C 0.390 3.610 8 O -0.389 6.389 9 N -0.327 5.327 10 C -0.070 4.070 11 C -0.039 4.039 12 C 0.024 3.976 13 H 0.115 0.885 14 O -0.353 6.353 15 C -0.002 4.002 16 N -0.370 5.370 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.210 4.210 20 N -0.578 5.578 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 O -0.080 6.080 26 C 0.014 3.986 27 C -0.128 4.128 28 C -0.052 4.052 29 C -0.174 4.174 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.187 0.813 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.222 0.778 41 H 0.043 0.957 42 H 0.040 0.960 43 H 0.223 0.777 44 H 0.065 0.935 45 H 0.152 0.848 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -24.313 -13.721 -16.448 32.403 hybrid contribution 0.925 0.829 0.179 1.255 sum -23.388 -12.893 -16.270 31.272 Atomic orbital electron populations 1.20840 0.90600 1.03111 1.02495 1.19364 0.96423 0.92066 1.02805 1.20204 0.91118 0.98269 0.98012 1.19880 0.94509 0.92478 1.07446 1.22709 0.89190 1.00111 1.01526 1.22010 0.95902 0.80417 1.08365 1.16655 0.81220 0.85934 0.77221 1.90848 1.85271 1.12452 1.50331 1.47573 1.06357 1.07521 1.71259 1.22072 1.03933 0.78782 1.02255 1.22392 0.83009 0.99439 0.99081 1.22517 0.88600 0.94531 0.91919 0.88504 1.86558 1.57373 1.31473 1.59929 1.21230 0.92567 0.97005 0.89410 1.42246 1.22328 1.72076 1.00349 1.19224 0.95719 1.30932 0.91497 0.91235 1.24768 0.98693 1.01839 0.95680 1.69684 1.37026 1.52121 0.98995 0.86176 0.83267 0.79149 0.77494 1.21703 1.21767 1.20784 1.84306 1.23771 1.23652 1.76306 1.19803 0.81622 0.95565 1.01567 1.19764 0.92391 0.94765 1.05903 1.19549 0.92060 0.95448 0.98169 1.20900 1.00140 0.93536 1.02806 0.91087 0.90959 0.91429 0.85177 0.81306 0.92232 0.90146 0.89766 0.89069 0.89009 0.77827 0.95698 0.96009 0.77742 0.93505 0.84799 0.90647 0.91148 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.56 9.58 36.00 0.35 -0.21 16 2 C -0.11 -0.82 5.85 -104.99 -0.61 -1.44 16 3 C -0.06 -0.52 9.68 -39.62 -0.38 -0.91 16 4 C -0.14 -1.61 6.38 -105.19 -0.67 -2.28 16 5 C -0.11 -1.41 10.81 -37.23 -0.40 -1.81 16 6 C -0.02 -0.23 6.73 -36.91 -0.25 -0.48 16 7 C 0.60 8.85 7.10 -12.72 -0.09 8.76 16 8 O -0.51 -8.62 15.41 1.05 0.02 -8.60 16 9 N -0.60 -7.76 2.83 -183.02 -0.52 -8.28 16 10 C 0.07 0.73 9.60 59.85 0.57 1.31 16 11 C 0.08 1.11 5.14 -4.04 -0.02 1.09 16 12 C 0.09 1.44 3.27 -26.73 -0.09 1.35 16 13 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 14 O -0.55 -10.51 12.16 -39.41 -0.48 -10.98 16 15 C 0.13 2.55 5.90 -4.04 -0.02 2.53 16 16 N -0.73 -19.06 5.55 -59.91 -0.33 -19.39 16 17 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 18 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 21 Si 0.91 22.87 29.55 -169.99 -5.02 17.84 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 O -0.18 -2.15 7.12 2.75 0.02 -2.13 16 26 C 0.06 0.70 7.41 -38.35 -0.28 0.42 16 27 C -0.11 -0.97 9.70 -39.45 -0.38 -1.36 16 28 C -0.05 -0.39 5.88 -104.56 -0.61 -1.01 16 29 C -0.12 -0.53 9.58 36.00 0.34 -0.19 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.27 5.89 -51.93 -0.31 -0.03 16 32 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 33 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.73 8.03 -51.93 -0.42 0.31 16 37 H 0.08 0.90 5.38 -51.93 -0.28 0.62 16 38 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 39 H 0.09 1.25 7.38 -51.93 -0.38 0.87 16 40 H 0.37 6.64 8.55 45.56 0.39 7.03 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.39 11.02 7.67 -40.82 -0.31 10.71 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.07 0.28 8.08 -51.93 -0.42 -0.14 16 48 H 0.08 0.27 5.89 -51.93 -0.31 -0.04 16 LS Contribution 397.28 15.07 5.99 5.99 Total: -1.00 -35.20 397.28 -8.64 -43.83 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.22 Total: 11.93 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -2.81 Total: -1.85 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: -0.13 Total: -56.03 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.44 Total: -21.72 kcal Atomic # 14 Polarization: 22.87 SS G_CDS: -5.02 Total: 17.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.20 -8.64 -43.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755793798.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.833 kcal (2) G-P(sol) polarization free energy of solvation -35.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds