Wall clock time and date at job start Sat Apr 11 2020 07:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38841 * 119.77472 * 2 1 4 4 C 1.37789 * 120.74218 * 180.02562 * 3 2 1 5 5 C 1.39034 * 119.85567 * 359.97438 * 4 3 2 6 6 O 1.34717 * 133.24292 * 180.02562 * 5 4 3 7 7 C 1.34951 * 110.86172 * 179.97438 * 6 5 4 8 8 C 1.46972 * 125.13179 * 179.97438 * 7 6 5 9 9 O 1.21655 * 120.00137 * 186.68154 * 8 7 6 10 10 N 1.34776 * 119.99733 * 6.68956 * 8 7 6 11 11 C 1.46498 * 120.00616 * 5.37212 * 10 8 7 12 12 C 1.46510 * 119.99666 * 185.37831 * 10 8 7 13 13 C 1.53003 * 109.46673 * 269.99518 * 12 10 8 14 14 H 1.08993 * 109.46865 * 60.00575 * 13 12 10 15 15 O 1.42901 * 109.47306 * 299.99713 * 13 12 10 16 16 C 1.53002 * 109.46510 * 180.02562 * 13 12 10 17 17 N 1.46507 * 109.46760 * 185.00265 * 16 13 12 18 18 C 1.46498 * 119.99573 * 269.99716 * 17 16 13 19 19 C 1.36933 * 120.00324 * 89.99748 * 17 16 13 20 20 H 1.08000 * 119.99987 * 338.57221 * 19 17 16 21 21 C 1.38806 * 120.00238 * 158.29201 * 19 17 16 22 22 N 1.31626 * 120.00087 * 346.16048 * 21 19 17 23 23 Si 1.86800 * 120.00229 * 166.16009 * 21 19 17 24 24 H 1.48494 * 109.47185 * 60.00338 * 23 21 19 25 25 H 1.48500 * 109.46996 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47105 * 299.99930 * 23 21 19 27 27 C 1.35808 * 109.73351 * 0.25826 * 7 6 5 28 28 C 1.40723 * 119.16035 * 0.02562 * 5 4 3 29 29 C 1.36612 * 119.77800 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47017 * 269.97520 * 1 2 3 31 31 H 1.09004 * 109.47371 * 29.97437 * 1 2 3 32 32 H 1.08998 * 109.47019 * 149.97366 * 1 2 3 33 33 H 1.08000 * 119.63347 * 0.02886 * 3 2 1 34 34 H 1.08004 * 120.07726 * 180.02562 * 4 3 2 35 35 H 1.09005 * 109.47277 * 275.08170 * 11 10 8 36 36 H 1.09001 * 109.46787 * 35.07588 * 11 10 8 37 37 H 1.08993 * 109.47237 * 155.07572 * 11 10 8 38 38 H 1.09002 * 109.46682 * 149.99668 * 12 10 8 39 39 H 1.08993 * 109.46881 * 29.99692 * 12 10 8 40 40 H 0.96694 * 113.99974 * 300.00789 * 15 13 12 41 41 H 1.08995 * 109.47723 * 65.00248 * 16 13 12 42 42 H 1.09005 * 109.47234 * 304.99546 * 16 13 12 43 43 H 1.08995 * 109.47182 * 264.81167 * 18 17 16 44 44 H 1.09004 * 109.47275 * 24.81625 * 18 17 16 45 45 H 1.09004 * 109.46926 * 144.81339 * 18 17 16 46 46 H 0.96990 * 120.00412 * 179.97438 * 22 21 19 47 47 H 1.08003 * 126.95772 * 179.73765 * 27 7 6 48 48 H 1.08000 * 120.14583 * 359.95697 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1965 1.2051 0.0000 4 6 3.5742 1.2284 -0.0005 5 6 4.2866 0.0344 -0.0005 6 8 5.6022 -0.2553 -0.0005 7 6 5.8003 -1.5902 0.0000 8 6 7.1135 -2.2503 -0.0003 9 8 7.1869 -3.4585 -0.1224 10 7 8.2363 -1.5172 0.1347 11 6 8.1449 -0.0792 0.3994 12 6 9.5483 -2.1583 0.0165 13 6 10.0051 -2.6427 1.3941 14 1 9.2838 -3.3606 1.7843 15 8 10.0978 -1.5286 2.2842 16 6 11.3756 -3.3116 1.2707 17 7 11.7595 -3.8806 2.5651 18 6 12.5134 -3.0717 3.5260 19 6 11.4137 -5.1684 2.8766 20 1 10.5939 -5.6470 2.3615 21 6 12.1204 -5.8607 3.8502 22 7 13.2756 -5.3979 4.2790 23 14 11.4320 -7.4491 4.5521 24 1 11.2619 -8.4402 3.4596 25 1 12.3703 -7.9885 5.5688 26 1 10.1164 -7.1808 5.1864 27 6 4.6032 -2.2315 -0.0053 28 6 3.5826 -1.1841 -0.0005 29 6 2.1855 -1.1857 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5134 32 1 -0.3633 -0.8897 -0.5142 33 1 1.6469 2.1348 0.0005 34 1 4.0996 2.1720 -0.0001 35 1 8.0314 0.4572 -0.5427 36 1 7.2828 0.1188 1.0364 37 1 9.0523 0.2562 0.9015 38 1 10.2696 -1.4403 -0.3738 39 1 9.4776 -3.0080 -0.6625 40 1 10.7231 -0.8483 1.9990 41 1 12.1152 -2.5714 0.9655 42 1 11.3268 -4.1053 0.5251 43 1 13.5783 -3.2765 3.4169 44 1 12.3254 -2.0146 3.3377 45 1 12.1972 -3.3221 4.5387 46 1 13.7693 -5.8814 4.9596 47 1 4.4383 -3.2988 -0.0103 48 1 1.6442 -2.1203 -0.0002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755807726.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:40 Heat of formation + Delta-G solvation = -45.698940 kcal Electronic energy + Delta-G solvation = -30051.044113 eV Core-core repulsion = 25879.808495 eV Total energy + Delta-G solvation = -4171.235618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.62769 -41.02294 -39.25181 -38.92521 -36.98119 -36.08401 -33.93838 -33.35899 -33.15217 -31.63338 -30.55632 -28.29268 -27.91316 -27.81553 -27.05269 -24.91973 -23.54617 -22.71087 -22.52956 -22.30302 -20.98736 -18.99827 -18.69119 -18.52554 -17.80645 -17.60278 -16.99145 -16.80426 -16.59301 -16.23453 -16.11461 -15.83897 -15.45142 -15.10166 -15.06153 -14.75264 -14.69984 -14.45119 -14.29775 -14.14200 -14.07148 -13.73466 -13.24328 -13.02278 -12.99700 -12.83262 -12.76453 -12.65999 -12.57186 -12.52420 -12.22292 -12.08229 -11.98505 -11.91827 -11.86308 -11.57510 -11.33679 -11.29567 -10.64017 -9.82543 -9.48828 -9.29206 -8.70504 -7.83749 -5.30830 -0.54022 0.28415 0.73671 1.28849 1.40960 1.44049 1.50683 1.82290 1.99659 2.48300 2.63151 3.13834 3.26681 3.53230 3.55395 3.68338 3.82051 3.84256 4.00036 4.05487 4.13921 4.23830 4.24573 4.37178 4.42789 4.48753 4.51427 4.61999 4.73175 4.74259 4.76597 4.89671 4.91213 4.92140 4.99631 5.08115 5.12618 5.20102 5.24764 5.27632 5.35769 5.40752 5.56191 5.58493 5.59589 5.73059 5.97087 6.13513 6.31001 6.78320 7.01087 7.14721 7.88417 8.28722 9.17409 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.002204 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.928753 B =12702.933704 C =13603.245792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.075 4.075 4 C -0.111 4.111 5 C 0.038 3.962 6 O -0.177 6.177 7 C -0.036 4.036 8 C 0.584 3.416 9 O -0.556 6.556 10 N -0.590 5.590 11 C 0.081 3.919 12 C 0.093 3.907 13 C 0.089 3.911 14 H 0.049 0.951 15 O -0.561 6.561 16 C 0.124 3.876 17 N -0.612 5.612 18 C 0.186 3.814 19 C -0.263 4.263 20 H 0.059 0.941 21 C -0.054 4.054 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.275 1.275 25 H -0.288 1.288 26 H -0.286 1.286 27 C -0.122 4.122 28 C -0.160 4.160 29 C -0.076 4.076 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.172 0.828 34 H 0.158 0.842 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.380 0.620 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.002 0.998 44 H 0.041 0.959 45 H 0.002 0.998 46 H 0.248 0.752 47 H 0.168 0.832 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.235 20.468 -12.956 33.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.105 4.105 3 C -0.093 4.093 4 C -0.130 4.130 5 C -0.009 4.009 6 O -0.079 6.079 7 C -0.086 4.086 8 C 0.372 3.628 9 O -0.437 6.437 10 N -0.320 5.320 11 C -0.060 4.060 12 C -0.030 4.030 13 C 0.026 3.974 14 H 0.068 0.932 15 O -0.368 6.368 16 C -0.003 4.003 17 N -0.335 5.335 18 C 0.041 3.959 19 C -0.393 4.393 20 H 0.077 0.923 21 C -0.249 4.249 22 N -0.582 5.582 23 Si 0.791 3.209 24 H -0.200 1.200 25 H -0.214 1.214 26 H -0.213 1.213 27 C -0.143 4.143 28 C -0.161 4.161 29 C -0.094 4.094 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.189 0.811 34 H 0.176 0.824 35 H 0.095 0.905 36 H 0.086 0.914 37 H 0.119 0.881 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.228 0.772 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.021 0.979 44 H 0.059 0.941 45 H 0.021 0.979 46 H 0.058 0.942 47 H 0.186 0.814 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -23.240 19.662 -12.572 32.936 hybrid contribution 0.461 -1.340 0.461 1.490 sum -22.779 18.322 -12.111 31.643 Atomic orbital electron populations 1.20837 0.88297 1.04152 1.03383 1.19957 0.98148 0.92199 1.00212 1.21384 0.92080 0.99374 0.96454 1.20379 0.93739 0.94612 1.04221 1.20347 0.81092 0.96738 1.02764 1.84215 1.24721 1.22511 1.76471 1.21672 0.95209 0.81356 1.10368 1.17105 0.82529 0.85733 0.77395 1.90879 1.86127 1.14090 1.52600 1.47743 1.05143 1.10746 1.68326 1.22112 1.04318 0.77348 1.02230 1.22329 0.83305 0.99920 0.97425 1.22776 0.97984 0.87634 0.89016 0.93237 1.86625 1.66414 1.32577 1.51179 1.21513 0.94157 0.97335 0.87306 1.43959 1.64629 1.10501 1.14363 1.20467 0.93519 0.90730 0.91148 1.19392 1.10095 0.90572 1.19259 0.92304 1.25690 0.96059 1.01336 1.01790 1.70217 1.13667 1.41398 1.32920 0.85402 0.77228 0.80095 0.78131 1.20039 1.21383 1.21271 1.22941 0.89860 1.00661 1.00853 1.20078 0.95482 0.92115 1.08424 1.20511 0.90287 0.99933 0.98653 0.90228 0.89568 0.90953 0.81070 0.82389 0.90542 0.91366 0.88143 0.85546 0.89977 0.77190 0.90812 0.93193 0.97936 0.94094 0.97863 0.94244 0.81402 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.00 71.24 0.71 0.02 16 2 C -0.10 -1.30 5.85 -20.10 -0.12 -1.42 16 3 C -0.08 -0.80 9.66 22.31 0.22 -0.59 16 4 C -0.11 -1.61 10.07 22.35 0.23 -1.38 16 5 C 0.04 0.83 7.41 23.07 0.17 1.00 16 6 O -0.18 -4.30 7.38 -13.05 -0.10 -4.40 16 7 C -0.04 -1.04 6.66 24.00 0.16 -0.88 16 8 C 0.58 19.01 7.63 86.53 0.66 19.67 16 9 O -0.56 -22.21 16.47 -4.21 -0.07 -22.28 16 10 N -0.59 -15.82 2.80 -851.16 -2.38 -18.20 16 11 C 0.08 1.56 8.98 127.77 1.15 2.70 16 12 C 0.09 2.46 5.04 86.38 0.44 2.89 16 13 C 0.09 3.12 3.48 30.60 0.11 3.22 16 14 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 15 O -0.56 -18.24 11.07 -148.98 -1.65 -19.89 16 16 C 0.12 4.87 5.30 86.38 0.46 5.33 16 17 N -0.61 -31.73 2.89 -726.92 -2.10 -33.83 16 18 C 0.19 9.46 8.75 127.77 1.12 10.57 16 19 C -0.26 -15.40 9.66 84.03 0.81 -14.59 16 20 H 0.06 3.46 7.87 -2.91 -0.02 3.44 16 21 C -0.05 -3.19 5.09 84.86 0.43 -2.76 16 22 N -0.94 -57.53 10.68 21.65 0.23 -57.30 16 23 Si 0.96 48.11 29.58 68.60 2.03 50.14 16 24 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 27 C -0.12 -3.27 10.81 23.79 0.26 -3.02 16 28 C -0.16 -3.66 6.38 -20.24 -0.13 -3.79 16 29 C -0.08 -1.30 9.68 22.25 0.22 -1.08 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 0.26 8.08 -2.38 -0.02 0.24 16 32 H 0.07 0.42 8.08 -2.39 -0.02 0.40 16 33 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 34 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 35 H 0.08 1.17 8.13 -2.38 -0.02 1.15 16 36 H 0.07 1.46 5.95 -2.39 -0.01 1.44 16 37 H 0.10 1.54 7.00 -2.39 -0.02 1.52 16 38 H 0.13 2.22 8.07 -2.39 -0.02 2.20 16 39 H 0.08 2.40 7.50 -2.39 -0.02 2.38 16 40 H 0.38 8.45 8.79 -74.06 -0.65 7.80 16 41 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 42 H 0.05 2.02 8.04 -2.38 -0.02 2.00 16 43 H 0.00 0.13 7.36 -2.39 -0.02 0.11 16 44 H 0.04 1.70 7.22 -2.38 -0.02 1.69 16 45 H 0.00 0.14 7.28 -2.38 -0.02 0.13 16 46 H 0.25 14.82 8.31 -92.72 -0.77 14.05 16 47 H 0.17 4.28 8.06 -2.91 -0.02 4.26 16 48 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -80.71 396.87 3.17 -77.54 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.33 Total: 12.29 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 6.88 Total: 15.92 kcal Atomic # 7 Polarization: -105.08 SS G_CDS: -4.25 Total: -109.32 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -1.81 Total: -46.57 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Total: -80.71 3.17 -77.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755807726.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.838 kcal (2) G-P(sol) polarization free energy of solvation -80.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds