Wall clock time and date at job start Sat Apr 11 2020 07:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37840 * 120.07205 * 2 1 4 4 C 1.38797 * 120.74326 * 180.02562 * 3 2 1 5 5 C 1.36656 * 120.44352 * 359.95758 * 4 3 2 6 6 C 1.39668 * 119.70981 * 0.02562 * 5 4 3 7 7 C 1.46257 * 134.19238 * 180.31728 * 6 5 4 8 8 C 1.35801 * 106.07724 * 180.10838 * 7 6 5 9 9 C 1.46982 * 125.12546 * 179.86371 * 8 7 6 10 10 O 1.21650 * 120.00090 * 353.78003 * 9 8 7 11 11 N 1.34773 * 119.99870 * 174.05717 * 9 8 7 12 12 C 1.46498 * 120.00107 * 354.18860 * 11 9 8 13 13 C 1.46509 * 120.00007 * 174.19282 * 11 9 8 14 14 C 1.52995 * 109.47133 * 89.99700 * 13 11 9 15 15 O 1.42900 * 109.47223 * 65.00414 * 14 13 11 16 16 C 1.42905 * 114.00045 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47045 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47281 * 64.99775 * 17 16 15 19 19 C 1.36941 * 120.00077 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99752 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00306 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99839 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47431 * 59.99849 * 23 21 19 25 25 H 1.48502 * 109.47199 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46968 * 299.99572 * 23 21 19 27 27 O 1.34948 * 109.74885 * 359.59841 * 8 7 6 28 28 C 1.34714 * 110.86340 * 0.26971 * 27 8 7 29 29 H 1.09003 * 109.47440 * 269.99449 * 1 2 3 30 30 H 1.09003 * 109.47318 * 29.99944 * 1 2 3 31 31 H 1.09008 * 109.47185 * 149.99816 * 1 2 3 32 32 H 1.07994 * 119.62599 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.77576 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.14691 * 180.02562 * 5 4 3 35 35 H 1.07999 * 126.96293 * 359.97258 * 7 6 5 36 36 H 1.09000 * 109.46989 * 85.21466 * 12 11 9 37 37 H 1.09001 * 109.47122 * 205.21338 * 12 11 9 38 38 H 1.08996 * 109.47451 * 325.20836 * 12 11 9 39 39 H 1.09000 * 109.46995 * 210.00003 * 13 11 9 40 40 H 1.09002 * 109.46773 * 329.99558 * 13 11 9 41 41 H 1.09005 * 109.46906 * 185.00491 * 14 13 11 42 42 H 1.09003 * 109.47313 * 304.99764 * 14 13 11 43 43 H 1.08997 * 109.46771 * 300.00062 * 16 15 14 44 44 H 1.09003 * 109.46899 * 59.99688 * 16 15 14 45 45 H 1.09001 * 109.46884 * 185.00284 * 17 16 15 46 46 H 1.09001 * 109.46974 * 304.99708 * 17 16 15 47 47 H 0.96999 * 120.00202 * 0.02562 * 18 17 16 48 48 H 0.97003 * 120.00378 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1929 0.0000 4 6 3.5855 1.2091 -0.0005 5 6 4.2917 0.0392 -0.0002 6 6 3.6108 -1.1803 0.0001 7 6 4.0295 -2.5817 0.0064 8 6 2.8868 -3.3155 0.0005 9 6 2.8249 -4.7841 0.0009 10 8 3.8462 -5.4360 -0.1075 11 7 1.6360 -5.4083 0.1156 12 6 0.4210 -4.6295 0.3675 13 6 1.5586 -6.8658 -0.0115 14 6 1.7397 -7.5082 1.3652 15 8 0.6453 -7.1437 2.2086 16 6 0.7173 -7.6950 3.5251 17 6 -0.4984 -7.2408 4.3354 18 7 -1.7160 -7.8029 3.7459 19 6 -2.9360 -7.5317 4.3056 20 1 -3.0006 -6.9030 5.1814 21 6 -4.0897 -8.0647 3.7473 22 7 -4.0110 -8.8312 2.6802 23 14 -5.7539 -7.6942 4.5104 24 1 -5.9912 -6.2284 4.4930 25 1 -6.8184 -8.3777 3.7325 26 1 -5.7753 -8.1826 5.9126 27 8 1.8168 -2.4933 0.0003 28 6 2.2034 -1.2028 0.0000 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6528 2.1253 0.0004 33 1 4.1108 2.1527 -0.0009 34 1 5.3715 0.0574 -0.0002 35 1 5.0422 -2.9569 0.0120 36 1 0.0182 -4.2683 -0.5787 37 1 -0.3191 -5.2600 0.8604 38 1 0.6597 -3.7809 1.0085 39 1 0.5859 -7.1440 -0.4171 40 1 2.3447 -7.2143 -0.6814 41 1 1.7711 -8.5926 1.2589 42 1 2.6723 -7.1595 1.8090 43 1 0.7272 -8.7832 3.4632 44 1 1.6287 -7.3506 4.0139 45 1 -0.3993 -7.5871 5.3641 46 1 -0.5575 -6.1524 4.3226 47 1 -1.6580 -8.3678 2.9595 48 1 -4.8172 -9.2035 2.2898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755878654.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:45 Heat of formation + Delta-G solvation = -32.704437 kcal Electronic energy + Delta-G solvation = -29958.301281 eV Core-core repulsion = 25787.629146 eV Total energy + Delta-G solvation = -4170.672134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.80935 -39.92158 -38.33542 -37.72633 -35.76669 -34.36913 -33.91048 -31.68970 -31.61128 -30.65410 -29.40519 -27.63538 -27.22047 -26.57552 -24.53483 -23.49055 -22.94445 -22.35401 -21.12545 -20.99373 -19.90190 -18.09000 -17.55634 -17.15010 -16.81309 -16.64879 -16.27721 -15.90257 -15.51611 -15.29981 -15.07962 -14.53962 -14.14106 -14.02144 -13.98286 -13.63879 -13.41807 -13.36106 -13.09742 -13.06622 -12.92267 -12.70454 -12.61429 -12.27820 -12.13790 -11.98485 -11.78348 -11.65193 -11.37268 -11.25147 -10.90206 -10.77516 -10.50539 -10.42803 -10.32698 -10.02902 -9.68691 -9.23306 -8.95895 -8.85980 -8.80553 -8.40938 -6.86881 -5.71865 -2.99908 0.28191 1.02247 1.55585 2.20501 2.83479 2.95953 3.34064 3.46047 3.50179 3.51370 3.99734 4.02897 4.22577 4.51212 4.62843 4.63685 4.73115 4.87132 4.98412 5.12942 5.15398 5.19913 5.22230 5.34213 5.36502 5.44485 5.45831 5.53174 5.58495 5.60983 5.64059 5.68118 5.72898 5.83153 5.87157 5.96166 6.00811 6.01773 6.08794 6.12847 6.20556 6.36586 6.38484 6.62228 6.75977 6.77477 7.14944 7.58676 7.72399 7.81522 8.46852 9.58278 10.16919 10.53146 11.50913 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.002488 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.848222 B =11250.581179 C =12952.900348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 C -0.091 4.091 4 C -0.134 4.134 5 C -0.069 4.069 6 C -0.140 4.140 7 C -0.119 4.119 8 C -0.016 4.016 9 C 0.594 3.406 10 O -0.523 6.523 11 N -0.590 5.590 12 C 0.077 3.923 13 C 0.120 3.880 14 C 0.044 3.956 15 O -0.371 6.371 16 C 0.059 3.941 17 C 0.155 3.845 18 N -0.727 5.727 19 C -0.238 4.238 20 H 0.068 0.932 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.287 1.287 27 O -0.172 6.172 28 C 0.065 3.935 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.136 0.864 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.169 0.831 36 H 0.057 0.943 37 H 0.099 0.901 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.048 0.952 43 H 0.048 0.952 44 H 0.042 0.958 45 H 0.031 0.969 46 H 0.025 0.975 47 H 0.387 0.613 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.162 18.018 -8.615 26.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.073 4.073 3 C -0.109 4.109 4 C -0.152 4.152 5 C -0.087 4.087 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.066 4.066 9 C 0.381 3.619 10 O -0.402 6.402 11 N -0.320 5.320 12 C -0.065 4.065 13 C -0.002 4.002 14 C -0.034 4.034 15 O -0.290 6.290 16 C -0.018 4.018 17 C 0.027 3.973 18 N -0.372 5.372 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.214 1.214 27 O -0.074 6.074 28 C 0.017 3.983 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.154 0.846 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.186 0.814 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.043 0.957 47 H 0.221 0.779 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 17.088 17.719 -8.630 26.085 hybrid contribution -0.592 -0.109 0.326 0.684 sum 16.496 17.610 -8.304 25.518 Atomic orbital electron populations 1.20790 0.89943 1.03404 1.03143 1.18892 0.96509 0.88294 1.03574 1.20910 0.94211 0.96499 0.99286 1.20767 0.94038 0.98124 1.02308 1.20335 1.00022 0.90024 0.98297 1.19915 0.93062 0.93909 1.07160 1.22699 0.99163 0.90106 1.01998 1.21963 0.85438 0.90983 1.08243 1.16824 0.84076 0.83409 0.77626 1.90859 1.33773 1.64161 1.51410 1.47698 1.07491 1.07958 1.68886 1.22068 0.86499 0.96518 1.01418 1.21681 1.04308 0.77917 0.96314 1.22849 0.90470 0.98649 0.91460 1.87996 1.44421 1.73224 1.23381 1.22778 0.98424 0.97391 0.83174 1.20684 0.85672 0.96900 0.94044 1.42276 1.00692 1.59669 1.34515 1.19189 0.84348 1.24890 1.08529 0.91359 1.24722 0.97716 1.00450 0.98120 1.69659 1.27671 1.37585 1.23240 0.86278 0.84047 0.77644 0.78272 1.21308 1.21722 1.21352 1.84311 1.33311 1.13971 1.75786 1.19662 0.92814 0.83855 1.02013 0.90531 0.90956 0.91014 0.84649 0.85159 0.85284 0.81365 0.92453 0.88273 0.90626 0.88565 0.88449 0.92310 0.93337 0.93339 0.94005 0.95097 0.95694 0.77933 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 10.02 36.00 0.36 -0.56 16 2 C -0.07 -0.69 5.89 -104.49 -0.62 -1.31 16 3 C -0.09 -0.69 9.67 -39.52 -0.38 -1.07 16 4 C -0.13 -0.98 9.98 -39.95 -0.40 -1.37 16 5 C -0.07 -0.59 10.06 -39.62 -0.40 -0.99 16 6 C -0.14 -1.55 6.38 -105.19 -0.67 -2.22 16 7 C -0.12 -1.39 10.81 -37.23 -0.40 -1.79 16 8 C -0.02 -0.22 6.67 -36.91 -0.25 -0.46 16 9 C 0.59 8.46 7.63 -12.72 -0.10 8.36 16 10 O -0.52 -8.37 16.47 5.23 0.09 -8.28 16 11 N -0.59 -8.00 2.84 -183.01 -0.52 -8.52 16 12 C 0.08 1.01 9.08 59.85 0.54 1.55 16 13 C 0.12 1.53 5.75 -4.04 -0.02 1.51 16 14 C 0.04 0.62 6.28 37.15 0.23 0.85 16 15 O -0.37 -6.47 9.20 -35.23 -0.32 -6.80 16 16 C 0.06 1.02 6.07 37.16 0.23 1.24 16 17 C 0.15 3.22 6.64 -4.05 -0.03 3.20 16 18 N -0.73 -18.88 5.55 -59.91 -0.33 -19.21 16 19 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.44 13.06 55.49 0.72 -27.71 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 O -0.17 -2.18 7.36 2.77 0.02 -2.16 16 28 C 0.06 0.76 7.07 -38.35 -0.27 0.49 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 31 H 0.07 0.61 8.09 -51.92 -0.42 0.19 16 32 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.10 1.49 7.21 -51.93 -0.37 1.11 16 38 H 0.08 0.99 5.93 -51.93 -0.31 0.69 16 39 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 40 H 0.10 1.13 7.50 -51.93 -0.39 0.74 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.39 10.62 7.67 -40.82 -0.31 10.31 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 404.90 15.07 6.10 6.10 Total: -1.00 -33.73 404.90 -8.95 -42.68 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -7.26 Total: 6.38 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.42 Total: -0.01 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.13 Total: -55.44 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.22 Total: -17.24 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.73 -8.95 -42.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755878654.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.976 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds