Wall clock time and date at job start Sat Apr 11 2020 07:49:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37840 * 120.07205 * 2 1 4 4 C 1.38797 * 120.74326 * 180.02562 * 3 2 1 5 5 C 1.36656 * 120.44352 * 359.95758 * 4 3 2 6 6 C 1.39668 * 119.70981 * 0.02562 * 5 4 3 7 7 C 1.46257 * 134.19238 * 180.31728 * 6 5 4 8 8 C 1.35801 * 106.07724 * 180.10838 * 7 6 5 9 9 C 1.46982 * 125.12546 * 179.86371 * 8 7 6 10 10 O 1.21650 * 120.00090 * 353.78003 * 9 8 7 11 11 N 1.34773 * 119.99870 * 174.05717 * 9 8 7 12 12 C 1.46498 * 120.00107 * 354.18860 * 11 9 8 13 13 C 1.46509 * 120.00007 * 174.19282 * 11 9 8 14 14 C 1.52995 * 109.47133 * 89.99700 * 13 11 9 15 15 O 1.42900 * 109.47223 * 65.00414 * 14 13 11 16 16 C 1.42905 * 114.00045 * 179.97438 * 15 14 13 17 17 C 1.52996 * 109.47045 * 179.97438 * 16 15 14 18 18 N 1.46497 * 109.47281 * 64.99775 * 17 16 15 19 19 C 1.36941 * 120.00077 * 179.97438 * 18 17 16 20 20 H 1.07999 * 119.99752 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99938 * 180.02562 * 19 18 17 22 22 N 1.31617 * 120.00306 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99839 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47431 * 59.99849 * 23 21 19 25 25 H 1.48502 * 109.47199 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46968 * 299.99572 * 23 21 19 27 27 O 1.34948 * 109.74885 * 359.59841 * 8 7 6 28 28 C 1.34714 * 110.86340 * 0.26971 * 27 8 7 29 29 H 1.09003 * 109.47440 * 269.99449 * 1 2 3 30 30 H 1.09003 * 109.47318 * 29.99944 * 1 2 3 31 31 H 1.09008 * 109.47185 * 149.99816 * 1 2 3 32 32 H 1.07994 * 119.62599 * 0.02562 * 3 2 1 33 33 H 1.07993 * 119.77576 * 179.97438 * 4 3 2 34 34 H 1.07994 * 120.14691 * 180.02562 * 5 4 3 35 35 H 1.07999 * 126.96293 * 359.97258 * 7 6 5 36 36 H 1.09000 * 109.46989 * 85.21466 * 12 11 9 37 37 H 1.09001 * 109.47122 * 205.21338 * 12 11 9 38 38 H 1.08996 * 109.47451 * 325.20836 * 12 11 9 39 39 H 1.09000 * 109.46995 * 210.00003 * 13 11 9 40 40 H 1.09002 * 109.46773 * 329.99558 * 13 11 9 41 41 H 1.09005 * 109.46906 * 185.00491 * 14 13 11 42 42 H 1.09003 * 109.47313 * 304.99764 * 14 13 11 43 43 H 1.08997 * 109.46771 * 300.00062 * 16 15 14 44 44 H 1.09003 * 109.46899 * 59.99688 * 16 15 14 45 45 H 1.09001 * 109.46884 * 185.00284 * 17 16 15 46 46 H 1.09001 * 109.46974 * 304.99708 * 17 16 15 47 47 H 0.96999 * 120.00202 * 0.02562 * 18 17 16 48 48 H 0.97003 * 120.00378 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1977 1.1929 0.0000 4 6 3.5855 1.2091 -0.0005 5 6 4.2917 0.0392 -0.0002 6 6 3.6108 -1.1803 0.0001 7 6 4.0295 -2.5817 0.0064 8 6 2.8868 -3.3155 0.0005 9 6 2.8249 -4.7841 0.0009 10 8 3.8462 -5.4360 -0.1075 11 7 1.6360 -5.4083 0.1156 12 6 0.4210 -4.6295 0.3675 13 6 1.5586 -6.8658 -0.0115 14 6 1.7397 -7.5082 1.3652 15 8 0.6453 -7.1437 2.2086 16 6 0.7173 -7.6950 3.5251 17 6 -0.4984 -7.2408 4.3354 18 7 -1.7160 -7.8029 3.7459 19 6 -2.9360 -7.5317 4.3056 20 1 -3.0006 -6.9030 5.1814 21 6 -4.0897 -8.0647 3.7473 22 7 -4.0110 -8.8312 2.6802 23 14 -5.7539 -7.6942 4.5104 24 1 -5.9912 -6.2284 4.4930 25 1 -6.8184 -8.3777 3.7325 26 1 -5.7753 -8.1826 5.9126 27 8 1.8168 -2.4933 0.0003 28 6 2.2034 -1.2028 0.0000 29 1 -0.3634 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5139 32 1 1.6528 2.1253 0.0004 33 1 4.1108 2.1527 -0.0009 34 1 5.3715 0.0574 -0.0002 35 1 5.0422 -2.9569 0.0120 36 1 0.0182 -4.2683 -0.5787 37 1 -0.3191 -5.2600 0.8604 38 1 0.6597 -3.7809 1.0085 39 1 0.5859 -7.1440 -0.4171 40 1 2.3447 -7.2143 -0.6814 41 1 1.7711 -8.5926 1.2589 42 1 2.6723 -7.1595 1.8090 43 1 0.7272 -8.7832 3.4632 44 1 1.6287 -7.3506 4.0139 45 1 -0.3993 -7.5871 5.3641 46 1 -0.5575 -6.1524 4.3226 47 1 -1.6580 -8.3678 2.9595 48 1 -4.8172 -9.2035 2.2898 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755878654.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:43 Heat of formation + Delta-G solvation = -53.047374 kcal Electronic energy + Delta-G solvation = -29959.183417 eV Core-core repulsion = 25787.629146 eV Total energy + Delta-G solvation = -4171.554270 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.63739 -40.98934 -39.13494 -38.95322 -36.99804 -36.18908 -34.64439 -33.45772 -32.41834 -31.85824 -30.43026 -29.28662 -27.86226 -27.67815 -25.64968 -25.37897 -23.67041 -23.33743 -22.80040 -21.77297 -20.85786 -19.24461 -18.99963 -18.41904 -17.84028 -17.72018 -17.44785 -16.96154 -16.57625 -16.43103 -16.31501 -15.89620 -15.53401 -15.26733 -14.80708 -14.77372 -14.64555 -14.37427 -14.28097 -14.23249 -14.07650 -13.96260 -13.43280 -13.26755 -13.19402 -13.02108 -12.91588 -12.75273 -12.68979 -12.59446 -12.53821 -12.18290 -11.94062 -11.91617 -11.71290 -11.53580 -11.13871 -10.95100 -10.53372 -9.93749 -9.65441 -9.16666 -8.97829 -7.92128 -5.20906 -0.53381 0.32743 0.72417 1.32470 1.47999 1.51346 1.57440 1.83245 1.94674 2.57717 2.67016 2.74760 3.12887 3.41260 3.51859 3.80211 3.91483 3.94755 3.97301 4.01181 4.08934 4.22859 4.28643 4.29885 4.36881 4.43636 4.44726 4.47921 4.51354 4.54844 4.57087 4.63870 4.75955 4.77444 4.84460 4.89688 4.98411 5.04847 5.11989 5.20976 5.28078 5.29796 5.40217 5.45913 5.49443 5.58401 5.98185 6.09801 6.27816 6.32580 6.73640 7.35889 8.11250 8.36487 9.31161 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.011257 B = 0.002488 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.848222 B =11250.581179 C =12952.900348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.081 4.081 4 C -0.129 4.129 5 C -0.073 4.073 6 C -0.161 4.161 7 C -0.110 4.110 8 C -0.046 4.046 9 C 0.594 3.406 10 O -0.547 6.547 11 N -0.592 5.592 12 C 0.089 3.911 13 C 0.119 3.881 14 C 0.045 3.955 15 O -0.393 6.393 16 C 0.067 3.933 17 C 0.152 3.848 18 N -0.739 5.739 19 C -0.247 4.247 20 H 0.074 0.926 21 C -0.075 4.075 22 N -0.968 5.968 23 Si 0.974 3.026 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.278 1.278 27 O -0.184 6.184 28 C 0.040 3.960 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.167 0.833 33 H 0.165 0.835 34 H 0.152 0.848 35 H 0.180 0.820 36 H 0.069 0.931 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.074 0.926 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.070 0.930 45 H 0.043 0.957 46 H 0.020 0.980 47 H 0.376 0.624 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.897 20.479 -8.272 28.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.093 4.093 3 C -0.099 4.099 4 C -0.147 4.147 5 C -0.091 4.091 6 C -0.162 4.162 7 C -0.131 4.131 8 C -0.095 4.095 9 C 0.382 3.618 10 O -0.428 6.428 11 N -0.322 5.322 12 C -0.054 4.054 13 C -0.003 4.003 14 C -0.032 4.032 15 O -0.313 6.313 16 C -0.010 4.010 17 C 0.025 3.975 18 N -0.382 5.382 19 C -0.379 4.379 20 H 0.092 0.908 21 C -0.267 4.267 22 N -0.618 5.618 23 Si 0.803 3.197 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.204 1.204 27 O -0.086 6.086 28 C -0.008 4.008 29 H 0.094 0.906 30 H 0.113 0.887 31 H 0.076 0.924 32 H 0.185 0.815 33 H 0.183 0.817 34 H 0.169 0.831 35 H 0.197 0.803 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.092 0.908 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.088 0.912 45 H 0.060 0.940 46 H 0.038 0.962 47 H 0.208 0.792 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 17.845 20.204 -8.258 28.193 hybrid contribution -0.718 -0.706 0.222 1.031 sum 17.127 19.498 -8.036 27.167 Atomic orbital electron populations 1.20799 0.89243 1.03850 1.03211 1.19255 0.97366 0.88267 1.04398 1.21386 0.94757 0.96863 0.96877 1.21227 0.94060 0.99030 1.00392 1.20716 1.01371 0.89461 0.97552 1.20159 0.93120 0.94400 1.08511 1.22969 0.99268 0.90693 1.00141 1.21796 0.86209 0.90610 1.10906 1.16954 0.83776 0.83989 0.77058 1.90826 1.34329 1.64906 1.52752 1.47763 1.07462 1.08286 1.68651 1.21919 0.85871 0.95828 1.01741 1.21753 1.04922 0.77616 0.95963 1.22963 0.89321 0.99649 0.91311 1.87968 1.45984 1.73611 1.23734 1.22642 0.97675 0.97433 0.83208 1.20845 0.85349 0.96302 0.95001 1.42457 1.01720 1.59747 1.34296 1.19603 0.85550 1.24256 1.08483 0.90789 1.25564 1.01393 1.00858 0.98898 1.69822 1.28260 1.38984 1.24780 0.85210 0.79330 0.77650 0.77546 1.20395 1.22087 1.20382 1.84243 1.33329 1.14617 1.76409 1.20157 0.93745 0.83904 1.02968 0.90625 0.88684 0.92409 0.81507 0.81728 0.83058 0.80270 0.91278 0.90353 0.90910 0.88338 0.87149 0.90832 0.93472 0.93124 0.91206 0.93970 0.96197 0.79205 0.94034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.72 10.02 71.23 0.71 -1.01 16 2 C -0.09 -1.66 5.89 -19.78 -0.12 -1.78 16 3 C -0.08 -0.99 9.67 22.31 0.22 -0.78 16 4 C -0.13 -1.44 9.98 22.03 0.22 -1.22 16 5 C -0.07 -1.09 10.06 22.24 0.22 -0.87 16 6 C -0.16 -3.47 6.38 -20.23 -0.13 -3.60 16 7 C -0.11 -2.59 10.81 23.79 0.26 -2.34 16 8 C -0.05 -1.24 6.67 24.00 0.16 -1.08 16 9 C 0.59 17.43 7.63 86.54 0.66 18.09 16 10 O -0.55 -17.84 16.47 -4.19 -0.07 -17.91 16 11 N -0.59 -16.52 2.84 -851.17 -2.41 -18.94 16 12 C 0.09 2.43 9.08 127.77 1.16 3.59 16 13 C 0.12 3.09 5.75 86.38 0.50 3.58 16 14 C 0.05 1.26 6.28 71.98 0.45 1.71 16 15 O -0.39 -13.77 9.20 -148.98 -1.37 -15.14 16 16 C 0.07 2.26 6.07 71.98 0.44 2.70 16 17 C 0.15 6.28 6.64 86.38 0.57 6.85 16 18 N -0.74 -38.76 5.55 -343.46 -1.91 -40.67 16 19 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 20 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 22 N -0.97 -59.89 13.06 21.65 0.28 -59.61 16 23 Si 0.97 46.48 29.55 68.60 2.03 48.51 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 27 O -0.18 -4.85 7.36 -12.99 -0.10 -4.94 16 28 C 0.04 0.94 7.07 23.07 0.16 1.10 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 0.94 8.09 -2.39 -0.02 0.92 16 31 H 0.06 1.01 8.09 -2.38 -0.02 0.99 16 32 H 0.17 0.94 8.06 -2.91 -0.02 0.91 16 33 H 0.17 0.70 8.06 -2.91 -0.02 0.67 16 34 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.18 3.59 8.06 -2.91 -0.02 3.56 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.08 2.48 7.21 -2.39 -0.02 2.46 16 38 H 0.07 2.03 5.93 -2.39 -0.01 2.01 16 39 H 0.10 2.49 8.07 -2.39 -0.02 2.47 16 40 H 0.11 2.57 7.50 -2.39 -0.02 2.55 16 41 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.38 21.06 7.67 -92.71 -0.71 20.35 16 48 H 0.25 15.04 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -73.24 404.90 3.51 -69.73 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 0.26 Total: 31.16 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 6.79 Total: 7.81 kcal Atomic # 7 Polarization: -115.18 SS G_CDS: -4.04 Total: -119.22 kcal Atomic # 8 Polarization: -36.46 SS G_CDS: -1.54 Total: -37.99 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -73.24 3.51 -69.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755878654.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.683 kcal (2) G-P(sol) polarization free energy of solvation -73.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds