Wall clock time and date at job start Sat Apr 11 2020 07:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86806 * 120.00125 * 2 1 4 4 H 1.48495 * 109.47156 * 239.99933 * 3 2 1 5 5 H 1.48507 * 109.47020 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47019 * 119.99546 * 3 2 1 7 7 C 1.37875 * 120.00117 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00059 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99731 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47079 * 181.60182 * 9 7 2 11 11 C 1.46900 * 110.99967 * 203.00825 * 10 9 7 12 12 C 1.53001 * 109.46842 * 66.04857 * 11 10 9 13 13 N 1.46900 * 109.46932 * 179.97438 * 12 11 10 14 14 C 1.47006 * 111.00264 * 293.63484 * 13 12 11 15 15 C 1.53102 * 109.25778 * 177.60818 * 14 13 12 16 16 O 1.43017 * 109.26175 * 56.84957 * 15 14 13 17 17 C 1.43021 * 113.73462 * 301.33102 * 16 15 14 18 18 C 1.47015 * 110.99648 * 169.99711 * 13 12 11 19 19 C 1.46904 * 110.99877 * 79.05656 * 10 9 7 20 20 C 1.52999 * 109.47395 * 283.19283 * 19 10 9 21 21 H 1.08995 * 110.01148 * 58.91576 * 20 19 10 22 22 C 1.53872 * 110.02772 * 180.29848 * 20 19 10 23 23 C 1.54169 * 108.70330 * 166.47100 * 22 20 19 24 24 S 1.82917 * 105.08405 * 332.09043 * 23 22 20 25 25 O 1.42107 * 109.35173 * 115.52273 * 24 23 22 26 26 O 1.42102 * 109.35519 * 248.72147 * 24 23 22 27 27 C 1.55053 * 110.02459 * 297.49127 * 20 19 10 28 28 H 0.97005 * 119.99981 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47568 * 61.60182 * 9 7 2 30 30 H 1.09007 * 109.47362 * 301.59852 * 9 7 2 31 31 H 1.09008 * 109.47075 * 186.04230 * 11 10 9 32 32 H 1.08999 * 109.47511 * 306.04818 * 11 10 9 33 33 H 1.08997 * 109.47092 * 299.99973 * 12 11 10 34 34 H 1.08999 * 109.47099 * 59.99708 * 12 11 10 35 35 H 1.08997 * 109.50838 * 297.54226 * 14 13 12 36 36 H 1.08997 * 109.51065 * 57.67342 * 14 13 12 37 37 H 1.09001 * 109.50408 * 296.91215 * 15 14 13 38 38 H 1.09004 * 109.54418 * 176.80937 * 15 14 13 39 39 H 1.08992 * 109.50645 * 298.73513 * 17 16 15 40 40 H 1.09001 * 109.50150 * 178.60289 * 17 16 15 41 41 H 1.09002 * 109.50916 * 302.32822 * 18 13 12 42 42 H 1.09001 * 109.50936 * 62.41944 * 18 13 12 43 43 H 1.09000 * 109.47379 * 43.19351 * 19 10 9 44 44 H 1.09003 * 109.46991 * 163.19073 * 19 10 9 45 45 H 1.09002 * 109.64438 * 286.32142 * 22 20 19 46 46 H 1.09000 * 109.65009 * 46.61902 * 22 20 19 47 47 H 1.08999 * 110.31904 * 90.98863 * 23 22 20 48 48 H 1.09000 * 110.31932 * 213.18737 * 23 22 20 49 49 H 1.09006 * 110.78901 * 316.54108 * 27 20 19 50 50 H 1.08995 * 110.79316 * 80.00498 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2051 -3.6154 0.0399 11 6 1.6009 -4.8434 -0.4938 12 6 1.3127 -4.6633 -1.9856 13 7 0.7090 -5.8915 -2.5194 14 6 1.6666 -7.0064 -2.4871 15 6 0.9797 -8.2769 -2.9950 16 8 0.4660 -8.0425 -4.3090 17 6 -0.4703 -6.9635 -4.3769 18 6 0.2019 -5.6797 -3.8830 19 6 2.7118 -3.8271 1.4024 20 6 3.7567 -2.7585 1.7298 21 1 3.3144 -1.7660 1.6451 22 6 4.3017 -2.9730 3.1527 23 6 5.5713 -2.1164 3.3301 24 16 6.2771 -1.9578 1.6501 25 8 6.2394 -0.5946 1.2503 26 8 7.4963 -2.6844 1.5809 27 6 4.9659 -2.8860 0.7677 28 1 -0.4850 0.8401 -0.0004 29 1 0.6464 -2.5696 -0.9036 30 1 0.6026 -2.5443 0.8756 31 1 2.2892 -5.6771 -0.3548 32 1 0.6696 -5.0492 0.0339 33 1 0.6245 -3.8296 -2.1246 34 1 2.2440 -4.4575 -2.5133 35 1 2.5185 -6.7731 -3.1258 36 1 2.0096 -7.1622 -1.4643 37 1 0.1608 -8.5403 -2.3256 38 1 1.7010 -9.0937 -3.0266 39 1 -1.3314 -7.1887 -3.7477 40 1 -0.7972 -6.8297 -5.4081 41 1 -0.5244 -4.8669 -3.8791 42 1 1.0303 -5.4244 -4.5439 43 1 1.8869 -3.7580 2.1116 44 1 3.1681 -4.8146 1.4710 45 1 3.5506 -2.6704 3.8823 46 1 4.5466 -4.0253 3.2967 47 1 5.3130 -1.1344 3.7264 48 1 6.2773 -2.6186 3.9915 49 1 5.2504 -3.9305 0.6401 50 1 4.7453 -2.4236 -0.1944 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771679662.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:50 Heat of formation + Delta-G solvation = -125.537724 kcal Electronic energy + Delta-G solvation = -30017.920190 eV Core-core repulsion = 25978.666453 eV Total energy + Delta-G solvation = -4039.253736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 346.176 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.58170 -39.34717 -37.98415 -37.31611 -36.93964 -36.02763 -34.56757 -32.18899 -31.51365 -30.31947 -29.29657 -27.73159 -26.16061 -25.08945 -24.73002 -23.52029 -21.61291 -21.18743 -21.11303 -19.72130 -18.65645 -17.73749 -17.52216 -17.29558 -17.10179 -16.80631 -16.50951 -16.28571 -16.00683 -15.96375 -15.76981 -15.52726 -15.10882 -14.91262 -14.77221 -14.30269 -14.08576 -13.96579 -13.84670 -13.25589 -13.16852 -13.12217 -13.06616 -12.97525 -12.89040 -12.64599 -12.52279 -12.43551 -12.34139 -12.29912 -12.20547 -12.01303 -11.57534 -11.47545 -11.30729 -11.25648 -11.10386 -10.92085 -10.64201 -10.47418 -9.41093 -8.94918 -8.14920 -6.19155 -0.75763 1.41066 1.41819 1.51724 1.73458 2.40454 2.64073 2.76167 2.96695 3.15805 3.18257 3.37690 3.71096 3.84279 3.88867 3.95941 4.03574 4.05353 4.13604 4.20124 4.26835 4.28923 4.36164 4.43543 4.55519 4.56927 4.66844 4.70022 4.75502 4.82505 4.83368 4.90668 4.92652 4.95592 4.97500 5.00929 5.03834 5.08405 5.27533 5.33307 5.33957 5.55985 5.78168 5.92825 6.00193 6.17305 6.18658 6.47105 6.69364 6.96968 7.48594 8.94582 Molecular weight = 346.18amu Principal moments of inertia in cm(-1) A = 0.009769 B = 0.003524 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2865.571485 B = 7943.096524 C = 9849.986873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.014 3.986 3 Si 0.927 3.073 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.078 0.922 9 C 0.205 3.795 10 N -0.541 5.541 11 C 0.071 3.929 12 C 0.070 3.930 13 N -0.543 5.543 14 C 0.015 3.985 15 C 0.064 3.936 16 O -0.404 6.404 17 C 0.069 3.931 18 C 0.016 3.984 19 C 0.086 3.914 20 C -0.103 4.103 21 H 0.094 0.906 22 C -0.105 4.105 23 C -0.565 4.565 24 S 2.366 3.634 25 O -0.994 6.994 26 O -0.980 6.980 27 C -0.542 4.542 28 H 0.260 0.740 29 H 0.007 0.993 30 H -0.031 1.031 31 H 0.090 0.910 32 H 0.022 0.978 33 H 0.053 0.947 34 H 0.032 0.968 35 H 0.035 0.965 36 H 0.100 0.900 37 H 0.063 0.937 38 H 0.118 0.882 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.034 0.966 43 H 0.028 0.972 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.113 0.887 47 H 0.140 0.860 48 H 0.166 0.834 49 H 0.157 0.843 50 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.414 -15.750 2.550 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.184 4.184 3 Si 0.754 3.246 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.543 4.543 8 H 0.096 0.904 9 C 0.079 3.921 10 N -0.265 5.265 11 C -0.058 4.058 12 C -0.058 4.058 13 N -0.269 5.269 14 C -0.113 4.113 15 C -0.013 4.013 16 O -0.323 6.323 17 C -0.008 4.008 18 C -0.112 4.112 19 C -0.043 4.043 20 C -0.123 4.123 21 H 0.112 0.888 22 C -0.144 4.144 23 C -0.698 4.698 24 S 2.557 3.443 25 O -0.991 6.991 26 O -0.977 6.977 27 C -0.675 4.675 28 H 0.069 0.931 29 H 0.025 0.975 30 H -0.014 1.014 31 H 0.108 0.892 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.136 0.864 39 H 0.081 0.919 40 H 0.133 0.867 41 H 0.100 0.900 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.131 0.869 47 H 0.158 0.842 48 H 0.184 0.816 49 H 0.175 0.825 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.208 -15.269 2.043 16.261 hybrid contribution -0.744 1.595 0.146 1.766 sum 4.464 -13.674 2.189 14.550 Atomic orbital electron populations 1.70043 1.07208 1.27309 1.52571 1.25567 0.95250 1.01769 0.95806 0.86069 0.78535 0.80600 0.79423 1.20323 1.21101 1.19072 1.21637 0.94204 0.90490 1.48013 0.90416 1.19510 0.89754 0.88786 0.94036 1.61930 1.37983 1.04494 1.22102 1.21921 0.97641 0.92593 0.93618 1.21935 0.97263 0.90927 0.95640 1.62186 1.37366 1.05882 1.21445 1.22913 0.93766 0.91878 1.02729 1.22813 0.98640 0.96251 0.83559 1.87941 1.61480 1.52556 1.30314 1.22723 0.91037 0.84293 1.02734 1.22811 0.99743 0.99880 0.88786 1.21868 0.96008 0.98063 0.88366 1.22225 0.94454 1.03628 0.92016 0.88762 1.22007 0.94817 1.01631 0.95967 1.30263 1.09442 1.10700 1.19365 1.09340 0.77643 0.75384 0.81903 1.93559 1.88173 1.35084 1.82301 1.93522 1.43434 1.73929 1.86852 1.30348 1.11898 1.14827 1.10383 0.93072 0.97548 1.01364 0.89190 0.95958 0.92812 0.95008 0.94706 0.88195 0.91909 0.86367 0.91927 0.86717 0.89970 0.94752 0.95342 0.88564 0.88351 0.86877 0.84191 0.81585 0.82455 0.85717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.83 13.29 21.45 0.28 -53.55 16 2 C 0.01 0.79 5.46 84.65 0.46 1.25 16 3 Si 0.93 44.35 29.54 68.60 2.03 46.38 16 4 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 5 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 6 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 7 C -0.51 -25.90 7.27 25.60 0.19 -25.72 16 8 H 0.08 3.83 4.97 -2.91 -0.01 3.82 16 9 C 0.21 9.69 4.63 85.56 0.40 10.08 16 10 N -0.54 -19.23 4.10 -900.77 -3.70 -22.93 16 11 C 0.07 2.14 4.87 86.30 0.42 2.56 16 12 C 0.07 2.24 4.93 86.30 0.43 2.66 16 13 N -0.54 -14.42 4.73 -895.22 -4.23 -18.65 16 14 C 0.02 0.32 5.44 86.32 0.47 0.79 16 15 C 0.06 1.18 7.01 72.02 0.50 1.68 16 16 O -0.40 -9.13 10.83 -148.98 -1.61 -10.74 16 17 C 0.07 1.41 7.01 72.02 0.50 1.91 16 18 C 0.02 0.40 5.65 86.32 0.49 0.89 16 19 C 0.09 2.45 4.45 86.30 0.38 2.83 16 20 C -0.10 -2.87 2.04 -9.80 -0.02 -2.89 16 21 H 0.09 3.46 5.10 -2.39 -0.01 3.45 16 22 C -0.11 -1.94 5.75 31.28 0.18 -1.76 16 23 C -0.56 -10.29 7.26 72.38 0.53 -9.76 16 24 S 2.37 64.41 6.11 -56.49 -0.34 64.07 16 25 O -0.99 -37.85 18.15 -127.49 -2.31 -40.16 16 26 O -0.98 -30.52 18.15 -127.49 -2.31 -32.83 16 27 C -0.54 -14.28 6.14 72.69 0.45 -13.83 16 28 H 0.26 14.50 8.31 -92.70 -0.77 13.73 16 29 H 0.01 0.34 5.84 -2.39 -0.01 0.33 16 30 H -0.03 -1.64 7.65 -2.38 -0.02 -1.65 16 31 H 0.09 2.17 6.19 -2.38 -0.01 2.15 16 32 H 0.02 0.72 8.12 -2.39 -0.02 0.71 16 33 H 0.05 2.06 6.13 -2.39 -0.01 2.05 16 34 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 35 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.10 1.85 6.38 -2.39 -0.02 1.83 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.12 1.61 8.14 -2.38 -0.02 1.59 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 2.08 8.09 -2.39 -0.02 2.06 16 42 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.03 0.87 7.67 -2.39 -0.02 0.85 16 44 H 0.10 1.99 7.71 -2.39 -0.02 1.98 16 45 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 46 H 0.11 1.35 8.10 -2.39 -0.02 1.33 16 47 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.17 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.16 3.10 8.10 -2.38 -0.02 3.08 16 50 H 0.12 3.95 7.20 -2.39 -0.02 3.94 16 Total: -1.00 -74.71 391.07 -5.91 -80.62 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.92 Total: 17.11 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 5.37 Total: -29.31 kcal Atomic # 7 Polarization: -87.49 SS G_CDS: -7.64 Total: -95.13 kcal Atomic # 8 Polarization: -77.49 SS G_CDS: -6.24 Total: -83.73 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 64.41 SS G_CDS: -0.34 Total: 64.07 kcal Total: -74.71 -5.91 -80.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771679662.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.921 kcal (2) G-P(sol) polarization free energy of solvation -74.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds