Wall clock time and date at job start Sat Apr 11 2020 07:49:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00182 * 2 1 4 4 C 1.52995 * 109.47095 * 179.97438 * 3 2 1 5 5 C 1.53008 * 110.29326 * 60.67998 * 4 3 2 6 6 C 1.54619 * 110.32554 * 182.91987 * 4 3 2 7 7 C 1.54605 * 102.90877 * 140.58941 * 6 4 3 8 8 N 1.48114 * 103.42220 * 322.87060 * 7 6 4 9 9 C 1.34773 * 127.03067 * 219.28464 * 8 7 6 10 10 O 1.21356 * 120.00324 * 179.68447 * 9 8 7 11 11 C 1.49362 * 120.00311 * 359.68521 * 9 8 7 12 12 O 1.21375 * 119.99817 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00311 * 180.02562 * 11 9 8 14 14 C 1.39745 * 119.99871 * 185.18896 * 13 11 9 15 15 C 1.39345 * 119.94899 * 213.04749 * 14 13 11 16 16 C 1.38472 * 120.41920 * 180.02562 * 15 14 13 17 17 C 1.37688 * 120.32979 * 359.96558 * 16 15 14 18 18 C 1.40746 * 119.90159 * 0.02562 * 17 16 15 19 19 C 1.41399 * 120.21297 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00205 * 155.15374 * 19 18 17 21 21 C 1.39932 * 120.00261 * 335.15654 * 19 18 17 22 22 N 1.30834 * 119.99541 * 342.41090 * 21 19 18 23 23 Si 1.86801 * 120.00487 * 162.41272 * 21 19 18 24 24 H 1.48500 * 109.47220 * 94.70041 * 23 21 19 25 25 H 1.48494 * 109.47344 * 214.70371 * 23 21 19 26 26 H 1.48507 * 109.46703 * 334.70174 * 23 21 19 27 27 C 1.38298 * 119.95619 * 33.03219 * 14 13 11 28 28 C 1.47477 * 105.93253 * 39.02447 * 8 7 6 29 29 H 1.08995 * 109.46950 * 60.00654 * 1 2 3 30 30 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47216 * 300.00304 * 1 2 3 32 32 H 1.08994 * 109.47219 * 59.99690 * 3 2 1 33 33 H 1.09003 * 109.46692 * 299.99291 * 3 2 1 34 34 H 1.08996 * 109.46773 * 299.31899 * 5 4 3 35 35 H 1.09000 * 109.47050 * 59.31567 * 5 4 3 36 36 H 1.08998 * 109.46684 * 179.31889 * 5 4 3 37 37 H 1.08993 * 110.74401 * 259.07309 * 6 4 3 38 38 H 1.09003 * 110.74060 * 22.22556 * 6 4 3 39 39 H 1.09004 * 110.61475 * 204.35372 * 7 6 4 40 40 H 1.08994 * 110.54463 * 81.35317 * 7 6 4 41 41 H 0.97003 * 119.99969 * 5.18644 * 13 11 9 42 42 H 1.07994 * 119.78757 * 359.97438 * 15 14 13 43 43 H 1.08002 * 119.83153 * 179.97438 * 16 15 14 44 44 H 1.08005 * 120.05125 * 180.02562 * 17 16 15 45 45 H 0.97001 * 119.99291 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.16131 * 0.27460 * 27 14 13 47 47 H 1.09003 * 109.91514 * 94.14181 * 28 8 7 48 48 H 1.09005 * 109.91385 * 215.41370 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0094 0.4418 -1.2503 6 6 4.1852 2.5857 0.0745 7 6 5.3826 2.3613 1.0264 8 7 4.8536 1.4032 2.0245 9 6 5.0873 1.4021 3.3518 10 8 4.5803 0.5541 4.0565 11 6 5.9704 2.4444 3.9556 12 8 6.4771 3.2929 3.2509 13 7 6.2045 2.4429 5.2828 14 6 6.9409 3.4789 5.8636 15 6 7.7580 3.2205 6.9623 16 6 8.4915 4.2399 7.5457 17 6 8.4219 5.5208 7.0455 18 6 7.6010 5.7971 5.9360 19 6 7.5241 7.1103 5.4173 20 1 7.2490 7.2678 4.3849 21 6 7.8045 8.2057 6.2416 22 7 7.7986 8.0641 7.5422 23 14 8.1873 9.8702 5.4850 24 1 6.9452 10.6813 5.4186 25 1 9.1938 10.5738 6.3199 26 1 8.7274 9.6788 4.1149 27 6 6.8579 4.7591 5.3468 28 6 4.0137 0.4547 1.2695 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8462 -0.8901 34 1 3.5829 -0.5611 -1.2608 35 1 3.6857 0.9836 -2.1390 36 1 5.0972 0.3740 -1.2421 37 1 4.5271 2.9050 -0.9099 38 1 3.4894 3.3122 0.4943 39 1 5.6717 3.2963 1.5064 40 1 6.2246 1.9285 0.4865 41 1 5.8618 1.7227 5.8350 42 1 7.8189 2.2191 7.3619 43 1 9.1215 4.0291 8.3972 44 1 8.9962 6.3124 7.5038 45 1 7.9933 8.8235 8.1135 46 1 6.2217 4.9614 4.4979 47 1 4.5995 -0.4225 0.9948 48 1 3.1557 0.1573 1.8725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453806943.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:07 Heat of formation + Delta-G solvation = -83.523539 kcal Electronic energy + Delta-G solvation = -30175.829173 eV Core-core repulsion = 26002.953357 eV Total energy + Delta-G solvation = -4172.875816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.85517 -39.60381 -38.34926 -37.31085 -37.12941 -34.69894 -33.45455 -32.96232 -29.88128 -29.84708 -28.61138 -27.78211 -27.19448 -26.02531 -25.35967 -23.98093 -22.84045 -21.19065 -20.64903 -19.56807 -19.40337 -17.96919 -17.19226 -16.85530 -16.52749 -16.46810 -15.98917 -15.67889 -15.36245 -15.17026 -14.91938 -14.69966 -14.39888 -13.99293 -13.69550 -13.51735 -13.11128 -12.97915 -12.91388 -12.86616 -12.56991 -12.35689 -12.19857 -12.08062 -11.74325 -11.70080 -11.44834 -11.29834 -11.15211 -11.12476 -10.95271 -10.86880 -10.75246 -10.51673 -10.08616 -10.00077 -9.72574 -9.40217 -9.10853 -8.96805 -8.85724 -7.50703 -7.00002 -6.76455 -4.37450 1.54840 2.38984 2.74772 2.92047 3.07315 3.11573 3.19053 3.35289 3.57037 3.70912 3.93332 4.19720 4.28871 4.52599 4.60526 4.67118 4.84044 4.94318 4.98431 5.02313 5.08442 5.16886 5.29273 5.34000 5.41157 5.50709 5.56483 5.66281 5.70852 5.76038 5.82106 5.83644 6.00195 6.11238 6.20833 6.35863 6.63410 6.78954 6.85712 6.97490 7.00789 7.17517 7.22773 7.39536 7.63737 7.76558 7.90032 8.03399 8.09095 8.16453 8.44816 8.62979 8.88613 8.93090 10.17400 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.002418 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.421686 B =11578.081599 C =12699.671026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.074 3.926 4 C -0.073 4.073 5 C -0.133 4.133 6 C -0.126 4.126 7 C 0.086 3.914 8 N -0.596 5.596 9 C 0.528 3.472 10 O -0.526 6.526 11 C 0.501 3.499 12 O -0.495 6.495 13 N -0.632 5.632 14 C 0.146 3.854 15 C -0.256 4.256 16 C -0.091 4.091 17 C -0.170 4.170 18 C 0.120 3.880 19 C -0.457 4.457 20 H 0.079 0.921 21 C 0.076 3.924 22 N -0.793 5.793 23 Si 0.908 3.092 24 H -0.271 1.271 25 H -0.275 1.275 26 H -0.260 1.260 27 C -0.210 4.210 28 C 0.118 3.882 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.052 0.948 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.122 0.878 40 H 0.076 0.924 41 H 0.411 0.589 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.120 0.880 45 H 0.280 0.720 46 H 0.107 0.893 47 H 0.074 0.926 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.579 -11.161 -14.668 20.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C -0.003 4.003 4 C -0.074 4.074 5 C -0.191 4.191 6 C -0.165 4.165 7 C -0.036 4.036 8 N -0.330 5.330 9 C 0.311 3.689 10 O -0.402 6.402 11 C 0.282 3.718 12 O -0.370 6.370 13 N -0.277 5.277 14 C 0.054 3.946 15 C -0.278 4.278 16 C -0.110 4.110 17 C -0.189 4.189 18 C 0.117 3.883 19 C -0.486 4.486 20 H 0.097 0.903 21 C -0.142 4.142 22 N -0.418 5.418 23 Si 0.732 3.268 24 H -0.196 1.196 25 H -0.200 1.200 26 H -0.183 1.183 27 C -0.231 4.231 28 C -0.004 4.004 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.096 0.904 39 H 0.140 0.860 40 H 0.094 0.906 41 H 0.246 0.754 42 H 0.110 0.890 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.091 0.909 46 H 0.125 0.875 47 H 0.092 0.908 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.363 -11.055 -14.477 20.481 hybrid contribution -0.353 0.575 0.066 0.678 sum -9.716 -10.480 -14.411 20.296 Atomic orbital electron populations 1.22735 0.80953 1.02797 0.99994 1.87866 1.19666 1.27750 1.95399 1.22604 0.92282 0.84832 1.00547 1.21537 0.93509 0.96494 0.95886 1.21804 1.01145 1.00747 0.95358 1.22814 0.97649 0.95219 1.00779 1.23021 0.95673 0.95737 0.89152 1.48541 1.47841 1.31139 1.05524 1.19942 0.82237 0.85533 0.81154 1.90744 1.50919 1.38637 1.59920 1.19858 0.82660 0.85767 0.83489 1.90696 1.48522 1.37898 1.59888 1.43143 1.51900 1.25780 1.06871 1.17456 0.95055 0.86440 0.95608 1.20062 1.06799 0.98232 1.02663 1.20469 0.98617 0.93428 0.98444 1.21370 1.02106 0.95064 1.00377 1.17472 0.88148 0.92237 0.90478 1.19562 1.40948 0.90137 0.97991 0.90294 1.25916 0.92451 1.01393 0.94451 1.69832 1.34636 1.33061 1.04267 0.86309 0.79039 0.80993 0.80462 1.19601 1.20033 1.18348 1.20959 1.05874 0.91000 1.05271 1.22169 0.95143 0.91667 0.91442 0.94132 0.89583 0.94018 0.92934 0.92735 0.91470 0.92226 0.92152 0.89221 0.90367 0.85983 0.90553 0.75354 0.88987 0.88820 0.86249 0.90868 0.87470 0.90818 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.63 9.63 -35.23 -0.34 -3.97 16 3 C 0.07 0.63 4.55 37.16 0.17 0.79 16 4 C -0.07 -0.64 0.77 -153.13 -0.12 -0.76 16 5 C -0.13 -0.97 8.07 37.16 0.30 -0.67 16 6 C -0.13 -1.10 6.16 -25.04 -0.15 -1.25 16 7 C 0.09 1.00 6.60 -2.31 -0.02 0.99 16 8 N -0.60 -8.12 3.29 -170.52 -0.56 -8.68 16 9 C 0.53 8.74 7.95 -11.63 -0.09 8.65 16 10 O -0.53 -9.47 16.82 5.49 0.09 -9.38 16 11 C 0.50 9.36 7.60 -11.63 -0.09 9.27 16 12 O -0.50 -10.10 11.35 5.47 0.06 -10.04 16 13 N -0.63 -12.15 5.32 -10.34 -0.06 -12.21 16 14 C 0.15 3.31 6.28 -83.82 -0.53 2.79 16 15 C -0.26 -5.67 9.97 -39.08 -0.39 -6.06 16 16 C -0.09 -2.09 10.01 -39.70 -0.40 -2.49 16 17 C -0.17 -4.38 8.69 -38.84 -0.34 -4.72 16 18 C 0.12 3.22 5.57 -106.85 -0.60 2.63 16 19 C -0.46 -12.20 9.05 -37.75 -0.34 -12.54 16 20 H 0.08 2.06 7.91 -52.48 -0.41 1.64 16 21 C 0.08 1.89 5.14 -17.34 -0.09 1.80 16 22 N -0.79 -20.31 10.96 55.55 0.61 -19.70 16 23 Si 0.91 18.61 29.59 -169.99 -5.03 13.58 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.50 7.11 56.52 0.40 -5.09 16 26 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 27 C -0.21 -5.31 8.39 -38.67 -0.32 -5.63 16 28 C 0.12 1.34 6.09 -2.99 -0.02 1.32 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.48 8.13 -51.93 -0.42 0.05 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.52 7.78 -51.93 -0.40 0.12 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.61 7.86 -51.93 -0.41 0.20 16 38 H 0.08 0.70 7.86 -51.93 -0.41 0.29 16 39 H 0.12 1.72 5.45 -51.93 -0.28 1.43 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.41 6.93 8.29 -40.82 -0.34 6.59 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 44 H 0.12 3.16 6.17 -52.48 -0.32 2.83 16 45 H 0.28 6.51 8.30 -40.82 -0.34 6.17 16 46 H 0.11 2.73 6.39 -52.49 -0.34 2.40 16 47 H 0.07 0.79 7.68 -51.93 -0.40 0.40 16 48 H 0.08 1.07 7.36 -51.93 -0.38 0.69 16 LS Contribution 392.46 15.07 5.91 5.91 Total: -1.00 -30.20 392.46 -8.27 -38.47 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -7.06 Total: 10.57 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.91 Total: -4.56 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: -0.01 Total: -40.59 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.18 Total: -23.38 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.20 -8.27 -38.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453806943.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.055 kcal (2) G-P(sol) polarization free energy of solvation -30.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds