Wall clock time and date at job start Sat Apr 11 2020 07:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00182 * 2 1 4 4 C 1.52995 * 109.47095 * 179.97438 * 3 2 1 5 5 C 1.53008 * 110.29326 * 60.67998 * 4 3 2 6 6 C 1.54619 * 110.32554 * 182.91987 * 4 3 2 7 7 C 1.54605 * 102.90877 * 140.58941 * 6 4 3 8 8 N 1.48114 * 103.42220 * 322.87060 * 7 6 4 9 9 C 1.34773 * 127.03067 * 219.28464 * 8 7 6 10 10 O 1.21356 * 120.00324 * 179.68447 * 9 8 7 11 11 C 1.49362 * 120.00311 * 359.68521 * 9 8 7 12 12 O 1.21375 * 119.99817 * 0.02562 * 11 9 8 13 13 N 1.34773 * 120.00311 * 180.02562 * 11 9 8 14 14 C 1.39745 * 119.99871 * 185.18896 * 13 11 9 15 15 C 1.39345 * 119.94899 * 213.04749 * 14 13 11 16 16 C 1.38472 * 120.41920 * 180.02562 * 15 14 13 17 17 C 1.37688 * 120.32979 * 359.96558 * 16 15 14 18 18 C 1.40746 * 119.90159 * 0.02562 * 17 16 15 19 19 C 1.41399 * 120.21297 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00205 * 155.15374 * 19 18 17 21 21 C 1.39932 * 120.00261 * 335.15654 * 19 18 17 22 22 N 1.30834 * 119.99541 * 342.41090 * 21 19 18 23 23 Si 1.86801 * 120.00487 * 162.41272 * 21 19 18 24 24 H 1.48500 * 109.47220 * 94.70041 * 23 21 19 25 25 H 1.48494 * 109.47344 * 214.70371 * 23 21 19 26 26 H 1.48507 * 109.46703 * 334.70174 * 23 21 19 27 27 C 1.38298 * 119.95619 * 33.03219 * 14 13 11 28 28 C 1.47477 * 105.93253 * 39.02447 * 8 7 6 29 29 H 1.08995 * 109.46950 * 60.00654 * 1 2 3 30 30 H 1.09003 * 109.47022 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47216 * 300.00304 * 1 2 3 32 32 H 1.08994 * 109.47219 * 59.99690 * 3 2 1 33 33 H 1.09003 * 109.46692 * 299.99291 * 3 2 1 34 34 H 1.08996 * 109.46773 * 299.31899 * 5 4 3 35 35 H 1.09000 * 109.47050 * 59.31567 * 5 4 3 36 36 H 1.08998 * 109.46684 * 179.31889 * 5 4 3 37 37 H 1.08993 * 110.74401 * 259.07309 * 6 4 3 38 38 H 1.09003 * 110.74060 * 22.22556 * 6 4 3 39 39 H 1.09004 * 110.61475 * 204.35372 * 7 6 4 40 40 H 1.08994 * 110.54463 * 81.35317 * 7 6 4 41 41 H 0.97003 * 119.99969 * 5.18644 * 13 11 9 42 42 H 1.07994 * 119.78757 * 359.97438 * 15 14 13 43 43 H 1.08002 * 119.83153 * 179.97438 * 16 15 14 44 44 H 1.08005 * 120.05125 * 180.02562 * 17 16 15 45 45 H 0.97001 * 119.99291 * 179.97438 * 22 21 19 46 46 H 1.08000 * 120.16131 * 0.27460 * 27 14 13 47 47 H 1.09003 * 109.91514 * 94.14181 * 28 8 7 48 48 H 1.09005 * 109.91385 * 215.41370 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0094 0.4418 -1.2503 6 6 4.1852 2.5857 0.0745 7 6 5.3826 2.3613 1.0264 8 7 4.8536 1.4032 2.0245 9 6 5.0873 1.4021 3.3518 10 8 4.5803 0.5541 4.0565 11 6 5.9704 2.4444 3.9556 12 8 6.4771 3.2929 3.2509 13 7 6.2045 2.4429 5.2828 14 6 6.9409 3.4789 5.8636 15 6 7.7580 3.2205 6.9623 16 6 8.4915 4.2399 7.5457 17 6 8.4219 5.5208 7.0455 18 6 7.6010 5.7971 5.9360 19 6 7.5241 7.1103 5.4173 20 1 7.2490 7.2678 4.3849 21 6 7.8045 8.2057 6.2416 22 7 7.7986 8.0641 7.5422 23 14 8.1873 9.8702 5.4850 24 1 6.9452 10.6813 5.4186 25 1 9.1938 10.5738 6.3199 26 1 8.7274 9.6788 4.1149 27 6 6.8579 4.7591 5.3468 28 6 4.0137 0.4547 1.2695 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8463 0.8899 33 1 1.6887 1.8462 -0.8901 34 1 3.5829 -0.5611 -1.2608 35 1 3.6857 0.9836 -2.1390 36 1 5.0972 0.3740 -1.2421 37 1 4.5271 2.9050 -0.9099 38 1 3.4894 3.3122 0.4943 39 1 5.6717 3.2963 1.5064 40 1 6.2246 1.9285 0.4865 41 1 5.8618 1.7227 5.8350 42 1 7.8189 2.2191 7.3619 43 1 9.1215 4.0291 8.3972 44 1 8.9962 6.3124 7.5038 45 1 7.9933 8.8235 8.1135 46 1 6.2217 4.9614 4.4979 47 1 4.5995 -0.4225 0.9948 48 1 3.1557 0.1573 1.8725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453806943.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:06 Heat of formation + Delta-G solvation = -101.970546 kcal Electronic energy + Delta-G solvation = -30176.629095 eV Core-core repulsion = 26002.953357 eV Total energy + Delta-G solvation = -4173.675738 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.16504 -40.79771 -39.58092 -38.85198 -38.16470 -36.38906 -34.96148 -34.25169 -31.79305 -30.72154 -30.35318 -28.39254 -28.22987 -27.28992 -26.71415 -25.22145 -23.89540 -22.97249 -22.35670 -20.91448 -20.34994 -19.63234 -18.63748 -18.11346 -17.59144 -17.39709 -17.17091 -16.84030 -16.74885 -16.49377 -16.38612 -16.09940 -15.76300 -15.20382 -14.97772 -14.68118 -14.47475 -14.38674 -14.06911 -13.86831 -13.64130 -13.56764 -13.47421 -13.11791 -13.05596 -12.94993 -12.80347 -12.74259 -12.58215 -12.30988 -12.19684 -11.91135 -11.88523 -11.66887 -11.56301 -11.53929 -11.15837 -10.92445 -10.62461 -10.50184 -10.00666 -9.43356 -8.84272 -8.63893 -6.37078 0.08671 0.93755 1.00221 1.18998 1.38535 1.48756 1.55007 2.06022 2.21416 2.39402 2.72030 2.75001 3.17649 3.46782 3.50203 3.70893 3.83354 4.14077 4.19535 4.26892 4.41067 4.43055 4.50287 4.56774 4.57850 4.60457 4.61754 4.69033 4.78617 4.81032 4.86853 4.96034 5.00098 5.05458 5.07910 5.08584 5.11828 5.15498 5.18353 5.29544 5.44471 5.61975 5.77026 6.00472 6.04163 6.06751 6.19367 6.24442 6.27047 6.59519 6.66199 6.86562 6.94938 7.00370 8.32242 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.014426 B = 0.002418 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.421686 B =11578.081599 C =12699.671026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.406 6.406 3 C 0.074 3.926 4 C -0.066 4.066 5 C -0.128 4.128 6 C -0.117 4.117 7 C 0.080 3.920 8 N -0.590 5.590 9 C 0.530 3.470 10 O -0.545 6.545 11 C 0.500 3.500 12 O -0.514 6.514 13 N -0.630 5.630 14 C 0.152 3.848 15 C -0.250 4.250 16 C -0.088 4.088 17 C -0.194 4.194 18 C 0.091 3.909 19 C -0.496 4.496 20 H 0.069 0.931 21 C 0.037 3.963 22 N -0.820 5.820 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.262 1.262 26 H -0.261 1.261 27 C -0.232 4.232 28 C 0.115 3.885 29 H 0.055 0.945 30 H 0.095 0.905 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.423 0.577 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.290 0.710 46 H 0.094 0.906 47 H 0.083 0.917 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.875 -11.787 -16.171 22.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.326 6.326 3 C -0.003 4.003 4 C -0.067 4.067 5 C -0.185 4.185 6 C -0.155 4.155 7 C -0.041 4.041 8 N -0.323 5.323 9 C 0.313 3.687 10 O -0.424 6.424 11 C 0.282 3.718 12 O -0.390 6.390 13 N -0.276 5.276 14 C 0.059 3.941 15 C -0.271 4.271 16 C -0.107 4.107 17 C -0.214 4.214 18 C 0.088 3.912 19 C -0.525 4.525 20 H 0.088 0.912 21 C -0.178 4.178 22 N -0.446 5.446 23 Si 0.802 3.198 24 H -0.187 1.187 25 H -0.186 1.186 26 H -0.185 1.185 27 C -0.253 4.253 28 C -0.006 4.006 29 H 0.073 0.927 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.137 0.863 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.111 0.889 41 H 0.261 0.739 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.125 0.875 45 H 0.101 0.899 46 H 0.112 0.888 47 H 0.101 0.899 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.682 -11.713 -16.008 22.072 hybrid contribution -0.314 0.631 0.506 0.868 sum -9.996 -11.082 -15.502 21.518 Atomic orbital electron populations 1.22886 0.79766 1.03715 1.00598 1.87834 1.21053 1.28174 1.95525 1.22618 0.91919 0.84759 1.00971 1.21525 0.93862 0.96124 0.95160 1.21777 1.01403 1.00428 0.94919 1.22800 0.96154 0.95210 1.01299 1.23152 0.97653 0.94241 0.89060 1.48674 1.47136 1.31605 1.04846 1.19435 0.82182 0.84890 0.82202 1.90732 1.51847 1.39160 1.60621 1.20333 0.82385 0.85896 0.83180 1.90706 1.49136 1.38767 1.60349 1.43063 1.51750 1.25351 1.07399 1.17522 0.94754 0.86386 0.95433 1.20459 1.05264 0.99638 1.01762 1.20816 0.98511 0.92494 0.98879 1.21354 1.02956 0.96134 1.00983 1.17815 0.88967 0.92972 0.91435 1.19749 1.43419 0.91307 0.98059 0.91239 1.26735 0.91514 1.04846 0.94715 1.69866 1.34695 1.34657 1.05388 0.85208 0.79216 0.75996 0.79391 1.18695 1.18609 1.18494 1.20935 1.06583 0.92225 1.05604 1.22380 0.94312 0.91848 0.92044 0.92680 0.88613 0.94240 0.94107 0.90702 0.91951 0.90500 0.91663 0.86342 0.90701 0.88588 0.88896 0.73875 0.85402 0.85747 0.87548 0.89945 0.88832 0.89926 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -6.98 9.63 -148.98 -1.44 -8.42 16 3 C 0.07 1.12 4.55 71.98 0.33 1.44 16 4 C -0.07 -1.02 0.77 -51.29 -0.04 -1.06 16 5 C -0.13 -1.48 8.07 71.98 0.58 -0.90 16 6 C -0.12 -1.80 6.16 31.69 0.20 -1.61 16 7 C 0.08 1.80 6.60 86.62 0.57 2.37 16 8 N -0.59 -15.81 3.29 -811.78 -2.67 -18.48 16 9 C 0.53 17.60 7.95 87.24 0.69 18.29 16 10 O -0.55 -19.59 16.82 -3.27 -0.05 -19.65 16 11 C 0.50 18.94 7.60 87.24 0.66 19.60 16 12 O -0.51 -21.60 11.35 -3.33 -0.04 -21.64 16 13 N -0.63 -24.18 5.32 -304.98 -1.62 -25.80 16 14 C 0.15 6.93 6.28 38.16 0.24 7.17 16 15 C -0.25 -10.74 9.97 22.59 0.23 -10.51 16 16 C -0.09 -4.02 10.01 22.20 0.22 -3.80 16 17 C -0.19 -10.30 8.69 22.75 0.20 -10.10 16 18 C 0.09 5.10 5.57 -21.31 -0.12 4.98 16 19 C -0.50 -27.71 9.05 23.46 0.21 -27.50 16 20 H 0.07 3.84 7.91 -2.91 -0.02 3.82 16 21 C 0.04 1.90 5.14 85.25 0.44 2.34 16 22 N -0.82 -42.92 10.96 21.82 0.24 -42.68 16 23 Si 0.98 38.64 29.59 68.60 2.03 40.67 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 27 C -0.23 -12.20 8.39 22.86 0.19 -12.00 16 28 C 0.12 2.50 6.09 86.53 0.53 3.02 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.04 0.70 8.13 -2.39 -0.02 0.69 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.06 0.81 7.78 -2.39 -0.02 0.80 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.12 1.20 7.86 -2.39 -0.02 1.18 16 38 H 0.07 1.23 7.86 -2.39 -0.02 1.22 16 39 H 0.10 2.75 5.45 -2.38 -0.01 2.73 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.42 13.98 8.29 -92.71 -0.77 13.21 16 42 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 44 H 0.11 5.82 6.17 -2.91 -0.02 5.80 16 45 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 46 H 0.09 5.05 6.39 -2.91 -0.02 5.03 16 47 H 0.08 1.66 7.68 -2.39 -0.02 1.65 16 48 H 0.07 1.74 7.36 -2.38 -0.02 1.72 16 Total: -1.00 -67.65 392.46 3.04 -64.61 By element: Atomic # 1 Polarization: 37.87 SS G_CDS: 0.22 Total: 38.08 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 6.37 Total: -6.69 kcal Atomic # 7 Polarization: -82.91 SS G_CDS: -4.06 Total: -86.96 kcal Atomic # 8 Polarization: -48.18 SS G_CDS: -1.53 Total: -49.71 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 2.03 Total: 40.67 kcal Total: -67.65 3.04 -64.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453806943.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.359 kcal (2) G-P(sol) polarization free energy of solvation -67.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds