Wall clock time and date at job start Sat Apr 11 2020 07:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00202 * 2 1 4 4 C 1.53005 * 109.46977 * 179.97438 * 3 2 1 5 5 C 1.52999 * 110.88906 * 303.88023 * 4 3 2 6 6 C 1.55157 * 111.00093 * 179.97438 * 4 3 2 7 7 C 1.54323 * 102.94464 * 206.38810 * 6 4 3 8 8 N 1.47022 * 107.26887 * 22.19582 * 7 6 4 9 9 C 1.34778 * 125.65019 * 181.02579 * 8 7 6 10 10 O 1.21354 * 119.99897 * 180.02562 * 9 8 7 11 11 C 1.49355 * 119.99876 * 0.02562 * 9 8 7 12 12 O 1.21376 * 119.99689 * 0.02562 * 11 9 8 13 13 N 1.34769 * 120.00086 * 180.27998 * 11 9 8 14 14 C 1.39744 * 120.00137 * 174.61451 * 13 11 9 15 15 C 1.39343 * 119.95293 * 325.52917 * 14 13 11 16 16 C 1.38473 * 120.41927 * 179.71782 * 15 14 13 17 17 C 1.37697 * 120.33050 * 0.55444 * 16 15 14 18 18 C 1.40750 * 119.89615 * 359.72236 * 17 16 15 19 19 C 1.41404 * 120.20663 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99811 * 25.18806 * 19 18 17 21 21 C 1.39932 * 120.00035 * 205.18216 * 19 18 17 22 22 N 1.30827 * 119.99814 * 16.78979 * 21 19 18 23 23 Si 1.86797 * 119.99990 * 196.79036 * 21 19 18 24 24 H 1.48493 * 109.47222 * 59.99961 * 23 21 19 25 25 H 1.48500 * 109.47043 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47222 * 299.99714 * 23 21 19 27 27 C 1.38303 * 119.94998 * 145.80111 * 14 13 11 28 28 C 1.47429 * 108.70213 * 1.28531 * 8 7 6 29 29 H 1.08991 * 109.47378 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47110 * 300.00144 * 1 2 3 31 31 H 1.09001 * 109.46877 * 59.99898 * 1 2 3 32 32 H 1.09003 * 109.46968 * 59.99928 * 3 2 1 33 33 H 1.08996 * 109.47271 * 300.00248 * 3 2 1 34 34 H 1.08999 * 109.46958 * 296.12070 * 5 4 3 35 35 H 1.08996 * 109.47063 * 56.12053 * 5 4 3 36 36 H 1.09000 * 109.46794 * 176.12076 * 5 4 3 37 37 H 1.09010 * 110.71942 * 88.02199 * 6 4 3 38 38 H 1.08997 * 110.72249 * 324.75589 * 6 4 3 39 39 H 1.08997 * 109.88191 * 262.77986 * 7 6 4 40 40 H 1.08994 * 109.88156 * 141.61065 * 7 6 4 41 41 H 0.97002 * 120.00189 * 354.61112 * 13 11 9 42 42 H 1.08000 * 119.78610 * 359.97438 * 15 14 13 43 43 H 1.07996 * 119.82993 * 180.29715 * 16 15 14 44 44 H 1.07999 * 120.05139 * 179.70056 * 17 16 15 45 45 H 0.97005 * 119.99686 * 180.02562 * 22 21 19 46 46 H 1.08003 * 120.16913 * 0.02562 * 27 14 13 47 47 H 1.09003 * 110.36521 * 94.48314 * 28 8 7 48 48 H 1.09002 * 110.36765 * 216.80422 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0159 0.3473 1.1877 6 6 4.2043 2.5846 0.0000 7 6 5.5693 2.3154 -0.6678 8 7 5.4321 1.0849 -1.4606 9 6 6.4104 0.5017 -2.1813 10 8 6.1829 -0.5169 -2.8005 11 6 7.7744 1.1090 -2.2179 12 8 8.0019 2.1275 -1.5981 13 7 8.7511 0.5290 -2.9431 14 6 9.9938 1.1555 -3.0690 15 6 10.0697 2.5458 -3.1234 16 6 11.2965 3.1769 -3.2422 17 6 12.4548 2.4364 -3.3194 18 6 12.3935 1.0310 -3.2716 19 6 13.5789 0.2641 -3.3508 20 1 14.5215 0.6939 -3.0456 21 6 13.5305 -1.0517 -3.8246 22 7 12.4858 -1.4683 -4.4929 23 14 14.9576 -2.2133 -3.5029 24 1 15.1510 -2.3661 -2.0386 25 1 14.6626 -3.5384 -4.1048 26 1 16.1940 -1.6585 -4.1103 27 6 11.1462 0.3946 -3.1451 28 6 4.0456 0.5980 -1.3418 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.7617 0.8560 2.1176 35 1 3.5316 -0.6288 1.1635 36 1 5.0966 0.2184 1.1277 37 1 4.3384 2.9484 1.0188 38 1 3.6195 3.2911 -0.5889 39 1 6.3354 2.1809 0.0958 40 1 5.8341 3.1483 -1.3189 41 1 8.5915 -0.3234 -3.3776 42 1 9.1663 3.1350 -3.0684 43 1 11.3447 4.2552 -3.2787 44 1 13.4088 2.9331 -3.4169 45 1 12.4521 -2.3806 -4.8210 46 1 11.0883 -0.6833 -3.1079 47 1 3.4424 0.9647 -2.1723 48 1 4.0275 -0.4914 -1.3106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453806945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:10 Heat of formation + Delta-G solvation = -87.717208 kcal Electronic energy + Delta-G solvation = -30065.320445 eV Core-core repulsion = 25892.262777 eV Total energy + Delta-G solvation = -4173.057667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.85179 -39.56342 -38.35671 -37.35703 -37.12498 -34.50673 -33.43708 -33.09944 -29.92074 -29.60947 -28.75306 -27.76877 -27.41312 -26.04041 -25.28601 -24.04882 -22.69287 -21.30330 -20.45190 -19.68871 -19.39376 -17.68864 -17.42100 -16.83967 -16.61236 -16.36239 -16.22455 -15.76768 -15.23091 -14.96861 -14.77990 -14.71754 -14.39890 -14.19428 -13.86581 -13.45117 -13.21250 -12.96694 -12.84086 -12.74493 -12.52361 -12.38555 -12.31364 -12.15978 -11.79867 -11.67248 -11.48640 -11.27301 -11.12531 -11.10192 -10.96957 -10.89496 -10.75101 -10.60465 -10.06643 -10.01222 -9.78253 -9.45995 -9.17474 -8.95465 -8.80437 -7.42667 -7.08307 -6.72530 -4.39527 1.58787 2.43173 2.77137 2.90679 3.07036 3.09486 3.22003 3.28238 3.57589 3.75532 3.92762 4.12195 4.22097 4.49199 4.61075 4.75883 4.76689 4.88283 4.90253 4.96371 5.01944 5.08672 5.22312 5.29079 5.40229 5.52033 5.60163 5.63125 5.67624 5.71497 5.78009 5.86960 6.03719 6.12374 6.21029 6.55052 6.60107 6.73853 6.77819 6.95690 7.02726 7.16013 7.22816 7.48476 7.54685 7.77790 7.88403 7.99182 8.10021 8.25316 8.41537 8.62888 8.85950 8.90686 10.17546 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.002175 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.453559 B =12870.867657 C =13705.368171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.386 6.386 3 C 0.078 3.922 4 C -0.074 4.074 5 C -0.133 4.133 6 C -0.125 4.125 7 C 0.110 3.890 8 N -0.594 5.594 9 C 0.523 3.477 10 O -0.521 6.521 11 C 0.500 3.500 12 O -0.504 6.504 13 N -0.629 5.629 14 C 0.140 3.860 15 C -0.227 4.227 16 C -0.085 4.085 17 C -0.225 4.225 18 C 0.120 3.880 19 C -0.462 4.462 20 H 0.079 0.921 21 C 0.076 3.924 22 N -0.796 5.796 23 Si 0.909 3.091 24 H -0.264 1.264 25 H -0.279 1.279 26 H -0.265 1.265 27 C -0.176 4.176 28 C 0.120 3.880 29 H 0.086 0.914 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.414 0.586 42 H 0.101 0.899 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.281 0.719 46 H 0.125 0.875 47 H 0.072 0.928 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.163 3.769 8.717 23.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.001 3.999 4 C -0.074 4.074 5 C -0.190 4.190 6 C -0.163 4.163 7 C -0.013 4.013 8 N -0.329 5.329 9 C 0.307 3.693 10 O -0.397 6.397 11 C 0.281 3.719 12 O -0.380 6.380 13 N -0.274 5.274 14 C 0.048 3.952 15 C -0.248 4.248 16 C -0.103 4.103 17 C -0.245 4.245 18 C 0.117 3.883 19 C -0.492 4.492 20 H 0.097 0.903 21 C -0.142 4.142 22 N -0.422 5.422 23 Si 0.733 3.267 24 H -0.188 1.188 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.197 4.197 28 C -0.002 4.002 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.107 0.893 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.251 0.749 42 H 0.119 0.881 43 H 0.111 0.889 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.142 0.858 47 H 0.090 0.910 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.057 3.527 8.626 23.027 hybrid contribution 0.242 -0.727 -0.223 0.798 sum -20.815 2.800 8.403 22.621 Atomic orbital electron populations 1.22741 0.80967 1.02884 0.99907 1.87908 1.19620 1.27587 1.95384 1.22443 0.91863 0.84971 1.00586 1.21824 0.93226 0.96319 0.96078 1.21675 1.01496 1.00087 0.95720 1.22830 0.95643 0.95629 1.02185 1.22161 0.97142 0.86591 0.95360 1.48192 1.10309 1.26968 1.47456 1.20043 0.85384 0.84271 0.79637 1.90760 1.82464 1.23638 1.42847 1.19842 0.85427 0.85548 0.81094 1.90743 1.81819 1.23559 1.41844 1.43186 1.11380 1.24372 1.48482 1.17610 0.82642 0.92041 1.02888 1.20256 0.97129 0.92113 1.15276 1.20403 0.92623 0.97350 0.99971 1.21060 0.96367 0.94251 1.12850 1.17359 0.92408 0.90923 0.87585 1.19509 0.94912 0.96444 1.38335 0.90277 1.25901 0.97107 0.98761 0.92409 1.69794 1.29189 1.18212 1.24960 0.86355 0.81531 0.78894 0.79873 1.18845 1.20358 1.19009 1.21119 0.90230 0.99582 1.08765 1.22375 0.80907 1.00860 0.96055 0.89553 0.94120 0.94064 0.92592 0.92837 0.92283 0.91325 0.92193 0.89312 0.90245 0.89922 0.90072 0.74938 0.88120 0.88885 0.88719 0.90782 0.85778 0.91030 0.89475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.31 9.80 -35.23 -0.35 -3.65 16 3 C 0.08 0.55 4.91 37.16 0.18 0.73 16 4 C -0.07 -0.62 0.75 -152.24 -0.11 -0.73 16 5 C -0.13 -1.17 8.45 37.16 0.31 -0.86 16 6 C -0.12 -0.94 5.91 -24.90 -0.15 -1.09 16 7 C 0.11 1.24 5.17 -3.06 -0.02 1.23 16 8 N -0.59 -8.02 3.31 -170.92 -0.57 -8.58 16 9 C 0.52 8.84 7.91 -11.63 -0.09 8.75 16 10 O -0.52 -9.76 16.74 5.49 0.09 -9.67 16 11 C 0.50 9.51 7.58 -11.63 -0.09 9.42 16 12 O -0.50 -10.09 11.86 5.47 0.06 -10.03 16 13 N -0.63 -12.91 5.32 -10.34 -0.05 -12.97 16 14 C 0.14 3.31 6.24 -83.82 -0.52 2.79 16 15 C -0.23 -5.31 8.66 -39.08 -0.34 -5.65 16 16 C -0.08 -1.94 10.01 -39.69 -0.40 -2.34 16 17 C -0.23 -5.53 9.79 -38.83 -0.38 -5.91 16 18 C 0.12 3.19 5.57 -106.85 -0.59 2.59 16 19 C -0.46 -12.12 9.05 -37.74 -0.34 -12.47 16 20 H 0.08 1.99 7.90 -52.49 -0.41 1.57 16 21 C 0.08 1.88 5.16 -17.35 -0.09 1.79 16 22 N -0.80 -20.25 10.94 55.55 0.61 -19.64 16 23 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 C -0.18 -4.52 8.60 -38.66 -0.33 -4.85 16 28 C 0.12 1.34 5.74 -2.41 -0.01 1.32 16 29 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.33 8.07 -51.93 -0.42 -0.09 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.65 7.57 -51.93 -0.39 0.26 16 36 H 0.06 0.62 7.91 -51.93 -0.41 0.20 16 37 H 0.09 0.55 8.05 -51.92 -0.42 0.13 16 38 H 0.08 0.49 8.04 -51.93 -0.42 0.08 16 39 H 0.08 1.02 7.58 -51.93 -0.39 0.63 16 40 H 0.08 0.97 7.69 -51.93 -0.40 0.57 16 41 H 0.41 7.98 8.30 -40.82 -0.34 7.64 16 42 H 0.10 2.28 6.48 -52.49 -0.34 1.94 16 43 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 45 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 46 H 0.12 3.26 6.17 -52.48 -0.32 2.94 16 47 H 0.07 0.75 7.99 -51.93 -0.42 0.33 16 48 H 0.09 1.09 7.95 -51.93 -0.41 0.68 16 LS Contribution 394.20 15.07 5.94 5.94 Total: -1.00 -30.06 394.20 -8.34 -38.40 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -7.19 Total: 10.62 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: -1.86 Total: -3.98 kcal Atomic # 7 Polarization: -41.18 SS G_CDS: -0.01 Total: -41.20 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.19 Total: -23.35 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -30.06 -8.34 -38.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453806945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.315 kcal (2) G-P(sol) polarization free energy of solvation -30.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds