Wall clock time and date at job start Sat Apr 11 2020 07:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00202 * 2 1 4 4 C 1.53005 * 109.46977 * 179.97438 * 3 2 1 5 5 C 1.52999 * 110.88906 * 303.88023 * 4 3 2 6 6 C 1.55157 * 111.00093 * 179.97438 * 4 3 2 7 7 C 1.54323 * 102.94464 * 206.38810 * 6 4 3 8 8 N 1.47022 * 107.26887 * 22.19582 * 7 6 4 9 9 C 1.34778 * 125.65019 * 181.02579 * 8 7 6 10 10 O 1.21354 * 119.99897 * 180.02562 * 9 8 7 11 11 C 1.49355 * 119.99876 * 0.02562 * 9 8 7 12 12 O 1.21376 * 119.99689 * 0.02562 * 11 9 8 13 13 N 1.34769 * 120.00086 * 180.27998 * 11 9 8 14 14 C 1.39744 * 120.00137 * 174.61451 * 13 11 9 15 15 C 1.39343 * 119.95293 * 325.52917 * 14 13 11 16 16 C 1.38473 * 120.41927 * 179.71782 * 15 14 13 17 17 C 1.37697 * 120.33050 * 0.55444 * 16 15 14 18 18 C 1.40750 * 119.89615 * 359.72236 * 17 16 15 19 19 C 1.41404 * 120.20663 * 179.97438 * 18 17 16 20 20 H 1.08001 * 119.99811 * 25.18806 * 19 18 17 21 21 C 1.39932 * 120.00035 * 205.18216 * 19 18 17 22 22 N 1.30827 * 119.99814 * 16.78979 * 21 19 18 23 23 Si 1.86797 * 119.99990 * 196.79036 * 21 19 18 24 24 H 1.48493 * 109.47222 * 59.99961 * 23 21 19 25 25 H 1.48500 * 109.47043 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47222 * 299.99714 * 23 21 19 27 27 C 1.38303 * 119.94998 * 145.80111 * 14 13 11 28 28 C 1.47429 * 108.70213 * 1.28531 * 8 7 6 29 29 H 1.08991 * 109.47378 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47110 * 300.00144 * 1 2 3 31 31 H 1.09001 * 109.46877 * 59.99898 * 1 2 3 32 32 H 1.09003 * 109.46968 * 59.99928 * 3 2 1 33 33 H 1.08996 * 109.47271 * 300.00248 * 3 2 1 34 34 H 1.08999 * 109.46958 * 296.12070 * 5 4 3 35 35 H 1.08996 * 109.47063 * 56.12053 * 5 4 3 36 36 H 1.09000 * 109.46794 * 176.12076 * 5 4 3 37 37 H 1.09010 * 110.71942 * 88.02199 * 6 4 3 38 38 H 1.08997 * 110.72249 * 324.75589 * 6 4 3 39 39 H 1.08997 * 109.88191 * 262.77986 * 7 6 4 40 40 H 1.08994 * 109.88156 * 141.61065 * 7 6 4 41 41 H 0.97002 * 120.00189 * 354.61112 * 13 11 9 42 42 H 1.08000 * 119.78610 * 359.97438 * 15 14 13 43 43 H 1.07996 * 119.82993 * 180.29715 * 16 15 14 44 44 H 1.07999 * 120.05139 * 179.70056 * 17 16 15 45 45 H 0.97005 * 119.99686 * 180.02562 * 22 21 19 46 46 H 1.08003 * 120.16913 * 0.02562 * 27 14 13 47 47 H 1.09003 * 110.36521 * 94.48314 * 28 8 7 48 48 H 1.09002 * 110.36765 * 216.80422 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.0159 0.3473 1.1877 6 6 4.2043 2.5846 0.0000 7 6 5.5693 2.3154 -0.6678 8 7 5.4321 1.0849 -1.4606 9 6 6.4104 0.5017 -2.1813 10 8 6.1829 -0.5169 -2.8005 11 6 7.7744 1.1090 -2.2179 12 8 8.0019 2.1275 -1.5981 13 7 8.7511 0.5290 -2.9431 14 6 9.9938 1.1555 -3.0690 15 6 10.0697 2.5458 -3.1234 16 6 11.2965 3.1769 -3.2422 17 6 12.4548 2.4364 -3.3194 18 6 12.3935 1.0310 -3.2716 19 6 13.5789 0.2641 -3.3508 20 1 14.5215 0.6939 -3.0456 21 6 13.5305 -1.0517 -3.8246 22 7 12.4858 -1.4683 -4.4929 23 14 14.9576 -2.2133 -3.5029 24 1 15.1510 -2.3661 -2.0386 25 1 14.6626 -3.5384 -4.1048 26 1 16.1940 -1.6585 -4.1103 27 6 11.1462 0.3946 -3.1451 28 6 4.0456 0.5980 -1.3418 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.7617 0.8560 2.1176 35 1 3.5316 -0.6288 1.1635 36 1 5.0966 0.2184 1.1277 37 1 4.3384 2.9484 1.0188 38 1 3.6195 3.2911 -0.5889 39 1 6.3354 2.1809 0.0958 40 1 5.8341 3.1483 -1.3189 41 1 8.5915 -0.3234 -3.3776 42 1 9.1663 3.1350 -3.0684 43 1 11.3447 4.2552 -3.2787 44 1 13.4088 2.9331 -3.4169 45 1 12.4521 -2.3806 -4.8210 46 1 11.0883 -0.6833 -3.1079 47 1 3.4424 0.9647 -2.1723 48 1 4.0275 -0.4914 -1.3106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453806945.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:09 Heat of formation + Delta-G solvation = -106.007157 kcal Electronic energy + Delta-G solvation = -30066.113556 eV Core-core repulsion = 25892.262777 eV Total energy + Delta-G solvation = -4173.850779 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.16387 -40.77984 -39.55214 -38.85324 -38.16977 -36.19159 -35.17139 -34.20021 -31.52055 -30.74647 -30.52702 -28.44475 -28.30837 -27.21895 -26.72079 -25.21595 -23.73657 -23.16196 -22.09105 -20.94331 -20.45324 -19.33342 -18.88869 -18.05056 -17.71011 -17.43342 -17.14637 -16.77817 -16.65538 -16.56244 -16.29285 -15.98642 -15.55378 -15.27928 -14.91746 -14.74323 -14.56011 -14.39248 -14.22301 -14.14091 -13.53516 -13.50777 -13.28282 -13.17260 -13.03003 -12.90166 -12.84562 -12.72841 -12.57108 -12.32381 -12.27257 -11.82996 -11.80744 -11.73780 -11.61858 -11.57239 -11.22395 -10.96367 -10.59299 -10.53287 -9.93527 -9.36491 -8.94098 -8.58821 -6.37421 0.08756 0.93513 1.04324 1.17514 1.39474 1.50239 1.54581 2.04988 2.21133 2.38959 2.73567 2.79528 3.18465 3.44977 3.46976 3.68930 3.83691 4.14864 4.18296 4.24810 4.43314 4.45848 4.54895 4.59638 4.63025 4.65448 4.66663 4.68149 4.79434 4.81355 4.87782 4.92615 4.97331 4.99889 5.03188 5.10878 5.12593 5.14146 5.15059 5.30542 5.38313 5.65474 5.73047 5.94632 5.99106 6.06021 6.17662 6.28396 6.37448 6.57511 6.62493 6.85840 6.92191 6.99183 8.32377 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.019819 B = 0.002175 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.453559 B =12870.867657 C =13705.368171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.080 3.920 4 C -0.066 4.066 5 C -0.130 4.130 6 C -0.110 4.110 7 C 0.102 3.898 8 N -0.584 5.584 9 C 0.524 3.476 10 O -0.547 6.547 11 C 0.502 3.498 12 O -0.513 6.513 13 N -0.634 5.634 14 C 0.143 3.857 15 C -0.234 4.234 16 C -0.080 4.080 17 C -0.241 4.241 18 C 0.092 3.908 19 C -0.495 4.495 20 H 0.081 0.919 21 C 0.035 3.965 22 N -0.823 5.823 23 Si 0.982 3.018 24 H -0.262 1.262 25 H -0.269 1.269 26 H -0.258 1.258 27 C -0.200 4.200 28 C 0.114 3.886 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.418 0.582 42 H 0.110 0.890 43 H 0.127 0.873 44 H 0.106 0.894 45 H 0.288 0.712 46 H 0.110 0.890 47 H 0.084 0.916 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.749 4.904 9.786 25.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.333 6.333 3 C 0.003 3.997 4 C -0.067 4.067 5 C -0.187 4.187 6 C -0.148 4.148 7 C -0.020 4.020 8 N -0.317 5.317 9 C 0.306 3.694 10 O -0.426 6.426 11 C 0.284 3.716 12 O -0.388 6.388 13 N -0.279 5.279 14 C 0.051 3.949 15 C -0.255 4.255 16 C -0.098 4.098 17 C -0.261 4.261 18 C 0.089 3.911 19 C -0.525 4.525 20 H 0.099 0.901 21 C -0.180 4.180 22 N -0.449 5.449 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.194 1.194 26 H -0.182 1.182 27 C -0.222 4.222 28 C -0.007 4.007 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.130 0.870 38 H 0.121 0.879 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.255 0.745 42 H 0.128 0.872 43 H 0.145 0.855 44 H 0.124 0.876 45 H 0.099 0.901 46 H 0.128 0.872 47 H 0.102 0.898 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.696 4.698 9.720 25.133 hybrid contribution 0.610 -1.011 -0.521 1.291 sum -22.086 3.688 9.200 24.207 Atomic orbital electron populations 1.22877 0.79610 1.03485 1.00932 1.87874 1.21200 1.28616 1.95625 1.22491 0.90194 0.84776 1.02246 1.21812 0.94683 0.96349 0.93843 1.21648 0.99976 1.00083 0.97036 1.22832 0.93052 0.95420 1.03450 1.22359 0.99560 0.85233 0.94834 1.48317 1.10519 1.27135 1.45724 1.19568 0.85066 0.84230 0.80504 1.90748 1.82642 1.24704 1.44467 1.20242 0.86003 0.85204 0.80170 1.90721 1.82248 1.23937 1.41943 1.43170 1.10894 1.24673 1.49195 1.17687 0.83311 0.92377 1.01545 1.20474 0.97795 0.92008 1.15235 1.20756 0.91790 0.99076 0.98219 1.21266 0.97590 0.93795 1.13447 1.17759 0.92980 0.92192 0.88176 1.19788 0.95028 0.97864 1.39789 0.90132 1.26758 0.99905 0.99816 0.91533 1.69853 1.30930 1.18913 1.25202 0.85249 0.78078 0.76744 0.79643 1.18656 1.19355 1.18186 1.21043 0.91062 0.99061 1.10989 1.22618 0.79492 1.00077 0.98496 0.89330 0.92795 0.93268 0.90428 0.91581 0.90206 0.92388 0.94239 0.87040 0.87901 0.91156 0.90527 0.74533 0.87214 0.85494 0.87585 0.90101 0.87243 0.89813 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -6.25 9.80 -148.98 -1.46 -7.71 16 3 C 0.08 0.86 4.91 71.98 0.35 1.21 16 4 C -0.07 -0.96 0.75 -50.71 -0.04 -0.99 16 5 C -0.13 -2.11 8.45 71.98 0.61 -1.50 16 6 C -0.11 -1.30 5.91 31.78 0.19 -1.12 16 7 C 0.10 2.16 5.17 86.73 0.45 2.61 16 8 N -0.58 -15.48 3.31 -813.04 -2.69 -18.18 16 9 C 0.52 17.96 7.91 87.24 0.69 18.65 16 10 O -0.55 -21.01 16.74 -3.26 -0.05 -21.07 16 11 C 0.50 19.38 7.58 87.24 0.66 20.04 16 12 O -0.51 -20.54 11.86 -3.33 -0.04 -20.58 16 13 N -0.63 -26.80 5.32 -304.99 -1.62 -28.42 16 14 C 0.14 6.95 6.24 38.16 0.24 7.19 16 15 C -0.23 -10.94 8.66 22.59 0.20 -10.74 16 16 C -0.08 -3.61 10.01 22.20 0.22 -3.39 16 17 C -0.24 -11.93 9.79 22.76 0.22 -11.71 16 18 C 0.09 5.01 5.57 -21.31 -0.12 4.90 16 19 C -0.50 -26.66 9.05 23.46 0.21 -26.44 16 20 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 21 C 0.04 1.76 5.16 85.25 0.44 2.20 16 22 N -0.82 -42.95 10.94 21.82 0.24 -42.71 16 23 Si 0.98 38.31 29.59 68.60 2.03 40.34 16 24 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 25 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 26 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 27 C -0.20 -10.68 8.60 22.86 0.20 -10.48 16 28 C 0.11 2.43 5.74 86.93 0.50 2.93 16 29 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.07 0.56 8.07 -2.39 -0.02 0.54 16 34 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.06 1.06 7.57 -2.39 -0.02 1.05 16 36 H 0.04 0.79 7.91 -2.39 -0.02 0.77 16 37 H 0.11 0.91 8.05 -2.38 -0.02 0.89 16 38 H 0.10 0.82 8.04 -2.39 -0.02 0.80 16 39 H 0.07 1.69 7.58 -2.39 -0.02 1.67 16 40 H 0.08 1.73 7.69 -2.39 -0.02 1.71 16 41 H 0.42 16.86 8.30 -92.71 -0.77 16.09 16 42 H 0.11 4.88 6.48 -2.91 -0.02 4.86 16 43 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 44 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 45 H 0.29 13.68 8.30 -92.70 -0.77 12.91 16 46 H 0.11 6.06 6.17 -2.91 -0.02 6.04 16 47 H 0.08 1.61 7.99 -2.39 -0.02 1.59 16 48 H 0.07 1.74 7.95 -2.39 -0.02 1.72 16 Total: -1.00 -66.75 394.20 2.88 -63.87 By element: Atomic # 1 Polarization: 39.39 SS G_CDS: 0.21 Total: 39.59 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 6.27 Total: -5.15 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -4.07 Total: -89.31 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -1.55 Total: -49.35 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -66.75 2.88 -63.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453806945.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.132 kcal (2) G-P(sol) polarization free energy of solvation -66.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds