Wall clock time and date at job start Sat Apr 11 2020 07:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38360 * 119.40205 * 2 1 4 4 C 1.38339 * 119.45368 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.82130 * 180.02562 * 4 3 2 6 6 C 1.39987 * 118.35197 * 359.97438 * 4 3 2 7 7 C 1.47520 * 120.59689 * 180.02562 * 6 4 3 8 8 O 1.21591 * 120.00108 * 90.00227 * 7 6 4 9 9 N 1.34781 * 120.00068 * 270.00066 * 7 6 4 10 10 C 1.47571 * 134.49423 * 180.02562 * 9 7 6 11 11 C 1.53946 * 86.11996 * 155.35733 * 10 9 7 12 12 O 1.42904 * 113.73883 * 269.15369 * 11 10 9 13 13 C 1.50701 * 113.74318 * 137.95533 * 11 10 9 14 14 H 1.08002 * 119.99761 * 1.91855 * 13 11 10 15 15 C 1.37871 * 119.99694 * 182.20418 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48494 * 109.47230 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47301 * 119.99669 * 17 15 13 20 20 H 1.48498 * 109.47430 * 239.99516 * 17 15 13 21 21 C 1.47807 * 134.45550 * 359.86515 * 9 7 6 22 22 C 1.40281 * 118.80264 * 0.27516 * 6 4 3 23 23 O 1.35429 * 119.79893 * 179.70115 * 22 6 4 24 24 C 1.42896 * 117.00229 * 179.97438 * 23 22 6 25 25 C 1.53775 * 113.61868 * 247.50123 * 24 23 22 26 26 C 1.53780 * 87.08259 * 220.02114 * 25 24 23 27 27 C 1.53780 * 87.08171 * 25.43276 * 26 25 24 28 28 N 1.31877 * 119.40999 * 180.02562 * 2 1 3 29 29 H 1.09001 * 109.47252 * 90.00633 * 1 2 3 30 30 H 1.09008 * 109.46902 * 209.99712 * 1 2 3 31 31 H 1.08993 * 109.47283 * 329.99797 * 1 2 3 32 32 H 1.07995 * 120.27079 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.46946 * 269.97476 * 5 4 3 34 34 H 1.08993 * 109.47015 * 29.97810 * 5 4 3 35 35 H 1.08999 * 109.46941 * 149.98002 * 5 4 3 36 36 H 1.09004 * 113.77444 * 41.05348 * 10 9 7 37 37 H 1.09000 * 113.77320 * 269.65884 * 10 9 7 38 38 H 0.96703 * 113.99734 * 178.06891 * 12 11 10 39 39 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 40 40 H 1.08997 * 113.77160 * 90.37973 * 21 9 7 41 41 H 1.09008 * 113.84085 * 318.92046 * 21 9 7 42 42 H 1.09006 * 112.84925 * 18.80994 * 24 23 22 43 43 H 1.09006 * 113.61575 * 334.56569 * 25 24 23 44 44 H 1.09003 * 113.61555 * 105.46767 * 25 24 23 45 45 H 1.09004 * 113.61481 * 270.88002 * 26 25 24 46 46 H 1.08999 * 113.61510 * 139.98303 * 26 25 24 47 47 H 1.09001 * 113.61046 * 220.01997 * 27 26 25 48 48 H 1.08995 * 113.69114 * 89.12485 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.3406 2.5015 0.0000 6 6 4.2356 -0.0247 -0.0005 7 6 5.7097 -0.0812 -0.0005 8 8 6.3172 -0.1045 1.0525 9 7 6.3831 -0.1070 -1.1677 10 6 7.8108 -0.1621 -1.5371 11 6 7.3361 -0.7844 -2.8627 12 8 7.2675 -2.2115 -2.8364 13 6 8.0571 -0.2532 -4.0748 14 1 8.8486 0.4723 -3.9575 15 6 7.7024 -0.6890 -5.3338 16 7 6.7386 -1.5724 -5.4767 17 14 8.5908 -0.0247 -6.8368 18 1 9.6261 0.9501 -6.4092 19 1 9.2368 -1.1458 -7.5657 20 1 7.6154 0.6499 -7.7305 21 6 5.9872 -0.0943 -2.5917 22 6 3.4758 -1.2040 -0.0059 23 8 4.0992 -2.4062 -0.0121 24 6 3.2676 -3.5682 -0.0167 25 6 3.3487 -4.3891 1.2811 26 6 3.3120 -5.6459 0.3957 27 6 3.9008 -4.7761 -0.7275 28 7 2.1546 -1.1488 -0.0005 29 1 -0.3634 -0.0001 -1.0277 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3633 0.8899 0.5138 32 1 1.6410 2.1376 0.0004 33 1 4.5265 2.8141 -1.0275 34 1 3.7619 3.2687 0.5142 35 1 5.2912 2.3581 0.5137 36 1 8.3987 -0.8406 -0.9189 37 1 8.2730 0.8183 -1.6526 38 1 6.9417 -2.6048 -3.6575 39 1 6.4888 -1.8787 -6.3625 40 1 5.9121 0.9060 -3.0180 41 1 5.1219 -0.7188 -2.8141 42 1 2.2477 -3.3576 -0.3387 43 1 4.2876 -4.2621 1.8202 44 1 2.4735 -4.2806 1.9218 45 1 2.3038 -6.0042 0.1876 46 1 3.9822 -6.4369 0.7323 47 1 3.4713 -4.9800 -1.7083 48 1 4.9905 -4.7540 -0.7388 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526017434.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:12 Heat of formation + Delta-G solvation = -54.044013 kcal Electronic energy + Delta-G solvation = -31836.009507 eV Core-core repulsion = 27664.412020 eV Total energy + Delta-G solvation = -4171.597488 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.17855 -40.99656 -40.17925 -38.97617 -37.65539 -35.84060 -35.21151 -34.17406 -32.90253 -30.79876 -29.33176 -28.43710 -27.11951 -27.07807 -26.73393 -26.16407 -24.15813 -22.74247 -21.85837 -20.74429 -20.13210 -19.39655 -19.31581 -18.35716 -17.99338 -17.56473 -16.97806 -16.70191 -16.35581 -16.13288 -15.97495 -15.83937 -15.35143 -15.02934 -14.92871 -14.52176 -14.27555 -14.20300 -14.05980 -13.72045 -13.70566 -13.55249 -13.46309 -13.44918 -13.21172 -13.04319 -12.90502 -12.82577 -12.79132 -12.40512 -12.26049 -12.22535 -12.19615 -11.60838 -11.48234 -11.25599 -11.17167 -10.74128 -10.62829 -10.58204 -10.30656 -9.65082 -9.47446 -8.27600 -6.45716 -0.17744 0.14454 1.43598 1.44758 1.49463 1.59899 1.86432 1.94346 2.39539 2.52375 2.93968 3.04058 3.40479 3.49379 3.51252 3.57457 3.73961 3.77664 3.80191 3.93059 4.05619 4.11233 4.26216 4.38536 4.44429 4.51064 4.54278 4.57515 4.62395 4.66049 4.68643 4.70504 4.81843 4.81925 4.86361 4.88238 4.90319 4.93819 4.96394 5.04591 5.15966 5.17065 5.18957 5.30092 5.53800 5.70674 5.89978 6.21980 6.60924 6.67531 6.74655 7.01656 7.28025 7.40817 8.78879 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.009644 B = 0.004088 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2902.562185 B = 6848.289125 C = 8028.023231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.175 3.825 3 C -0.206 4.206 4 C 0.021 3.979 5 C -0.118 4.118 6 C -0.234 4.234 7 C 0.595 3.405 8 O -0.595 6.595 9 N -0.621 5.621 10 C 0.111 3.889 11 C 0.224 3.776 12 O -0.585 6.585 13 C -0.554 4.554 14 H 0.076 0.924 15 C 0.033 3.967 16 N -0.918 5.918 17 Si 0.970 3.030 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.276 1.276 21 C 0.102 3.898 22 C 0.344 3.656 23 O -0.312 6.312 24 C 0.046 3.954 25 C -0.148 4.148 26 C -0.114 4.114 27 C -0.142 4.142 28 N -0.553 5.553 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.187 0.813 33 H 0.093 0.907 34 H 0.117 0.883 35 H 0.048 0.952 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.386 0.614 39 H 0.275 0.725 40 H 0.095 0.905 41 H 0.046 0.954 42 H 0.120 0.880 43 H 0.070 0.930 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.089 0.911 47 H 0.082 0.918 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.289 2.992 6.989 17.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.038 3.962 3 C -0.225 4.225 4 C 0.013 3.987 5 C -0.174 4.174 6 C -0.240 4.240 7 C 0.385 3.615 8 O -0.478 6.478 9 N -0.353 5.353 10 C -0.010 4.010 11 C 0.183 3.817 12 O -0.396 6.396 13 C -0.592 4.592 14 H 0.094 0.906 15 C -0.167 4.167 16 N -0.558 5.558 17 Si 0.795 3.205 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.202 1.202 21 C -0.021 4.021 22 C 0.166 3.834 23 O -0.219 6.219 24 C -0.009 4.009 25 C -0.185 4.185 26 C -0.151 4.151 27 C -0.180 4.180 28 N -0.279 5.279 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.129 0.871 32 H 0.204 0.796 33 H 0.111 0.889 34 H 0.135 0.865 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.129 0.871 38 H 0.239 0.761 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.138 0.862 43 H 0.089 0.911 44 H 0.106 0.894 45 H 0.128 0.872 46 H 0.108 0.892 47 H 0.101 0.899 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.110 2.088 8.177 17.307 hybrid contribution 1.024 0.442 -1.313 1.723 sum -14.086 2.531 6.864 15.873 Atomic orbital electron populations 1.20913 0.84771 1.05242 1.04676 1.21955 0.98861 0.86687 0.88743 1.22009 0.92261 1.00953 1.07299 1.20530 0.95051 0.93183 0.89923 1.20961 0.99450 0.92846 1.04175 1.19763 0.93010 0.93786 1.17416 1.17770 0.86911 0.74870 0.81966 1.90675 1.70818 1.54284 1.32009 1.50189 1.09694 1.69636 1.05748 1.23532 0.82593 1.00747 0.94172 1.20081 0.90532 0.79416 0.91650 1.86070 1.89128 1.20873 1.43525 1.21735 1.20462 1.26121 0.90884 0.90605 1.25777 0.94755 0.94324 1.01892 1.69504 1.29663 1.31494 1.25125 0.85314 0.78561 0.78234 0.78360 1.18901 1.20823 1.20173 1.24053 1.00834 1.00895 0.76276 1.19802 0.88127 0.85460 0.90046 1.86406 1.36645 1.12756 1.86088 1.24558 0.96020 0.80762 0.99600 1.23395 1.02761 0.96059 0.96333 1.22609 1.02926 0.95490 0.94116 1.23280 1.00959 0.93862 0.99888 1.67151 1.06390 1.32119 1.22211 0.88578 0.90305 0.87140 0.79585 0.88901 0.86463 0.93284 0.92387 0.87146 0.76051 0.91529 0.88742 0.93568 0.86233 0.91088 0.89447 0.87159 0.89209 0.89946 0.91304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.37 10.16 71.24 0.72 -0.65 16 2 C 0.17 4.27 6.78 42.58 0.29 4.56 16 3 C -0.21 -4.67 9.41 22.32 0.21 -4.46 16 4 C 0.02 0.63 5.95 -19.42 -0.12 0.51 16 5 C -0.12 -2.93 9.69 71.24 0.69 -2.24 16 6 C -0.23 -9.36 5.40 -19.91 -0.11 -9.47 16 7 C 0.59 27.84 5.65 86.69 0.49 28.33 16 8 O -0.60 -31.36 17.83 -4.00 -0.07 -31.44 16 9 N -0.62 -28.81 3.61 -843.49 -3.05 -31.86 16 10 C 0.11 5.15 8.23 86.49 0.71 5.86 16 11 C 0.22 11.23 1.40 -10.89 -0.02 11.22 16 12 O -0.58 -32.07 13.48 -148.98 -2.01 -34.08 16 13 C -0.55 -27.95 8.61 25.60 0.22 -27.73 16 14 H 0.08 3.68 7.81 -2.91 -0.02 3.66 16 15 C 0.03 1.64 5.40 84.65 0.46 2.10 16 16 N -0.92 -47.11 11.21 21.45 0.24 -46.87 16 17 Si 0.97 39.40 29.54 68.60 2.03 41.43 16 18 H -0.26 -10.46 7.11 99.48 0.71 -9.76 16 19 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 20 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 21 C 0.10 4.72 8.00 86.43 0.69 5.41 16 22 C 0.34 13.60 7.51 85.13 0.64 14.24 16 23 O -0.31 -13.17 9.58 -87.25 -0.84 -14.01 16 24 C 0.05 1.49 4.18 31.12 0.13 1.62 16 25 C -0.15 -3.93 7.91 31.12 0.25 -3.68 16 26 C -0.11 -2.44 8.08 31.12 0.25 -2.19 16 27 C -0.14 -4.18 7.91 31.12 0.25 -3.94 16 28 N -0.55 -17.84 8.49 -296.05 -2.51 -20.36 16 29 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.11 0.85 8.07 -2.39 -0.02 0.83 16 32 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 33 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.12 1.92 8.10 -2.39 -0.02 1.90 16 35 H 0.05 1.49 7.19 -2.39 -0.02 1.47 16 36 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 37 H 0.11 4.50 8.09 -2.39 -0.02 4.48 16 38 H 0.39 21.32 6.61 -74.06 -0.49 20.84 16 39 H 0.27 13.31 8.31 -92.71 -0.77 12.54 16 40 H 0.09 4.03 8.09 -2.39 -0.02 4.01 16 41 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 42 H 0.12 3.62 6.88 -2.38 -0.02 3.61 16 43 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 44 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 46 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 47 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -71.25 402.10 0.04 -71.22 By element: Atomic # 1 Polarization: 45.98 SS G_CDS: 0.49 Total: 46.47 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 5.76 Total: 19.49 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -5.32 Total: -99.08 kcal Atomic # 8 Polarization: -76.61 SS G_CDS: -2.92 Total: -79.52 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -71.25 0.04 -71.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526017434.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.173 kcal (2) G-P(sol) polarization free energy of solvation -71.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds