Wall clock time and date at job start Sat Apr 11 2020 07:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30181 * 126.80029 * 2 1 4 4 O 1.20920 * 111.60420 * 180.25233 * 3 2 1 5 5 C 1.34051 * 111.56594 * 359.75068 * 4 3 2 6 6 C 1.50695 * 126.77382 * 179.97438 * 5 4 3 7 7 C 1.35445 * 106.44276 * 359.97438 * 5 4 3 8 8 C 1.50708 * 128.00307 * 179.97438 * 7 5 4 9 9 N 1.46892 * 109.47382 * 89.99561 * 8 7 5 10 10 C 1.46899 * 110.99968 * 179.97438 * 9 8 7 11 11 C 1.53005 * 109.47189 * 180.02562 * 10 9 8 12 12 H 1.08998 * 109.46878 * 59.99552 * 11 10 9 13 13 O 1.42901 * 109.46781 * 300.00322 * 11 10 9 14 14 C 1.53001 * 109.47303 * 179.97438 * 11 10 9 15 15 O 1.42898 * 109.46956 * 184.99728 * 14 11 10 16 16 C 1.35679 * 116.99614 * 180.02562 * 15 14 11 17 17 C 1.39309 * 119.81808 * 359.72490 * 16 15 14 18 18 C 1.36437 * 120.18677 * 179.76415 * 17 16 15 19 19 C 1.40834 * 119.80869 * 0.50929 * 18 17 16 20 20 C 1.41218 * 120.18032 * 179.71921 * 19 18 17 21 21 H 1.08004 * 119.99743 * 155.16854 * 20 19 18 22 22 C 1.39891 * 120.00130 * 335.17420 * 20 19 18 23 23 N 1.30881 * 119.99725 * 342.14916 * 22 20 19 24 24 Si 1.86794 * 120.00189 * 162.15609 * 22 20 19 25 25 H 1.48497 * 109.47100 * 94.65192 * 24 22 20 26 26 H 1.48496 * 109.47243 * 214.65583 * 24 22 20 27 27 H 1.48503 * 109.47035 * 334.65474 * 24 22 20 28 28 C 1.40840 * 119.64046 * 359.74803 * 19 18 17 29 29 C 1.36435 * 119.80962 * 359.97438 * 28 19 18 30 30 H 1.09006 * 109.46495 * 270.16224 * 1 2 3 31 31 H 1.08999 * 109.46992 * 30.15708 * 1 2 3 32 32 H 1.08995 * 109.46837 * 150.16414 * 1 2 3 33 33 H 1.08997 * 109.47297 * 269.99817 * 6 5 4 34 34 H 1.08998 * 109.47523 * 30.00348 * 6 5 4 35 35 H 1.09008 * 109.46710 * 149.99834 * 6 5 4 36 36 H 1.08999 * 109.46625 * 329.99566 * 8 7 5 37 37 H 1.09002 * 109.46942 * 209.99657 * 8 7 5 38 38 H 1.00906 * 111.00135 * 56.04566 * 9 8 7 39 39 H 1.09001 * 109.46946 * 299.99823 * 10 9 8 40 40 H 1.08996 * 109.47061 * 60.00231 * 10 9 8 41 41 H 0.96697 * 113.99820 * 299.99233 * 13 11 10 42 42 H 1.08998 * 109.46733 * 305.00119 * 14 11 10 43 43 H 1.08998 * 109.46515 * 64.99742 * 14 11 10 44 44 H 1.08001 * 119.90834 * 0.02562 * 17 16 15 45 45 H 1.07995 * 120.10214 * 180.25708 * 18 17 16 46 46 H 0.96998 * 119.99986 * 179.97438 * 23 22 20 47 47 H 1.08004 * 120.09375 * 179.97438 * 28 19 18 48 48 H 1.08001 * 119.90019 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7254 -0.0050 5 6 3.6025 -0.6068 -0.0036 6 6 4.9022 -1.3694 -0.0090 7 6 2.3540 -1.1319 0.0037 8 6 1.9591 -2.5864 0.0075 9 7 1.8382 -3.0573 1.3936 10 6 1.4531 -4.4743 1.4365 11 6 1.3367 -4.9274 2.8932 12 1 0.5795 -4.3295 3.4003 13 8 2.5956 -4.7559 3.5473 14 6 0.9350 -6.4030 2.9379 15 8 0.7131 -6.7954 4.2939 16 6 0.3476 -8.0840 4.5103 17 6 0.2002 -8.9527 3.4313 18 6 -0.1623 -10.2513 3.6405 19 6 -0.3981 -10.7098 4.9511 20 6 -0.7795 -12.0507 5.1762 21 1 -0.5785 -12.5165 6.1297 22 6 -1.4175 -12.7758 4.1643 23 7 -1.9723 -12.1474 3.1592 24 14 -1.4777 -14.6410 4.2474 25 1 -2.7524 -15.0674 4.8786 26 1 -1.3934 -15.2007 2.8746 27 1 -0.3349 -15.1375 5.0554 28 6 -0.2521 -9.8236 6.0359 29 6 0.1166 -8.5296 5.8098 30 1 -0.3632 0.0029 1.0278 31 1 -0.3633 0.8886 -0.5163 32 1 -0.3633 -0.8914 -0.5113 33 1 5.2103 -1.5550 -1.0379 34 1 5.6686 -0.7850 0.5000 35 1 4.7677 -2.3201 0.5072 36 1 2.7201 -3.1707 -0.5097 37 1 1.0023 -2.7044 -0.5011 38 1 1.1853 -2.4896 1.9128 39 1 0.4926 -4.6049 0.9379 40 1 2.2102 -5.0721 0.9290 41 1 3.3180 -5.2601 3.1485 42 1 0.0202 -6.5480 2.3633 43 1 1.7329 -7.0098 2.5100 44 1 0.3776 -8.5984 2.4265 45 1 -0.2721 -10.9246 2.8034 46 1 -2.4144 -12.6501 2.4573 47 1 -0.4315 -10.1673 7.0440 48 1 0.2285 -7.8486 6.6405 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000557222256.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:17 Heat of formation + Delta-G solvation = -36.359487 kcal Electronic energy + Delta-G solvation = -28743.685715 eV Core-core repulsion = 24572.855086 eV Total energy + Delta-G solvation = -4170.830629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.90584 -40.63322 -39.10446 -37.93073 -37.03306 -35.22734 -35.16887 -34.25188 -31.82680 -31.48447 -30.75963 -29.66379 -28.99940 -27.47957 -26.54982 -24.96885 -23.27681 -22.60057 -22.44530 -21.94144 -21.09559 -19.26368 -18.72335 -18.63537 -17.99543 -17.74614 -17.44776 -16.87146 -16.47577 -16.03182 -15.76478 -15.56681 -15.46943 -15.31324 -14.82459 -14.46979 -14.37645 -14.30249 -14.17067 -13.90049 -13.79598 -13.75722 -13.57460 -13.44157 -13.21176 -13.18057 -12.92395 -12.81636 -12.73027 -12.68219 -12.29749 -11.87911 -11.86188 -11.68588 -11.57194 -11.21773 -10.97580 -10.86026 -10.83471 -10.14444 -9.56022 -9.38086 -8.89697 -8.59832 -6.21804 0.50105 0.94587 1.05141 1.17000 1.40382 1.49885 1.56139 2.21020 2.23481 2.44169 2.72941 3.21542 3.33247 3.54069 3.59834 3.71282 3.85342 3.93131 4.01803 4.08901 4.10657 4.30790 4.36915 4.40231 4.42547 4.50759 4.54823 4.62363 4.63544 4.70770 4.73291 4.78949 4.85173 4.89905 4.96961 5.01102 5.08087 5.16037 5.16110 5.30339 5.37712 5.53416 5.66906 5.93572 5.97932 6.07032 6.24784 6.29650 6.57123 6.80351 6.93559 6.95952 7.11609 7.30824 8.37165 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.024066 B = 0.001567 C = 0.001547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.205046 B =17858.775858 C =18096.984980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.017 3.983 3 N -0.405 5.405 4 O 0.075 5.925 5 C -0.009 4.009 6 C -0.074 4.074 7 C -0.213 4.213 8 C 0.144 3.856 9 N -0.679 5.679 10 C 0.041 3.959 11 C 0.125 3.875 12 H 0.092 0.908 13 O -0.559 6.559 14 C 0.030 3.970 15 O -0.330 6.330 16 C 0.001 3.999 17 C -0.174 4.174 18 C -0.154 4.154 19 C 0.052 3.948 20 C -0.500 4.500 21 H 0.074 0.926 22 C 0.035 3.965 23 N -0.831 5.831 24 Si 0.980 3.020 25 H -0.264 1.264 26 H -0.266 1.266 27 H -0.260 1.260 28 C -0.205 4.205 29 C -0.124 4.124 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.054 0.946 38 H 0.342 0.658 39 H 0.055 0.945 40 H 0.095 0.905 41 H 0.384 0.616 42 H 0.064 0.936 43 H 0.066 0.934 44 H 0.122 0.878 45 H 0.107 0.893 46 H 0.287 0.713 47 H 0.108 0.892 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.681 17.471 -12.133 22.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.142 4.142 3 N -0.115 5.115 4 O 0.015 5.985 5 C -0.073 4.073 6 C -0.131 4.131 7 C -0.218 4.218 8 C 0.015 3.985 9 N -0.310 5.310 10 C -0.088 4.088 11 C 0.065 3.935 12 H 0.110 0.890 13 O -0.365 6.365 14 C -0.047 4.047 15 O -0.246 6.246 16 C -0.043 4.043 17 C -0.193 4.193 18 C -0.173 4.173 19 C 0.050 3.950 20 C -0.530 4.530 21 H 0.093 0.907 22 C -0.179 4.179 23 N -0.458 5.458 24 Si 0.801 3.199 25 H -0.189 1.189 26 H -0.190 1.190 27 H -0.184 1.184 28 C -0.225 4.225 29 C -0.143 4.143 30 H 0.106 0.894 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.117 0.883 37 H 0.072 0.928 38 H 0.160 0.840 39 H 0.073 0.927 40 H 0.114 0.886 41 H 0.233 0.767 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.139 0.861 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.126 0.874 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.698 19.167 -11.767 24.114 hybrid contribution -1.134 -1.803 -0.674 2.234 sum 7.564 17.363 -12.440 22.660 Atomic orbital electron populations 1.20294 0.84506 1.04569 1.04167 1.23993 1.00069 0.88718 1.01451 1.73840 0.89887 1.25248 1.22510 1.84761 1.21456 1.23893 1.68411 1.24987 0.99818 0.82925 0.99586 1.20551 0.88401 0.98877 1.05254 1.20993 0.91628 0.97465 1.11666 1.20114 1.01370 0.87261 0.89757 1.60348 1.55534 1.02474 1.12674 1.22448 1.01422 0.89993 0.94954 1.21750 0.86794 0.91633 0.93295 0.88961 1.86603 1.18571 1.72356 1.58956 1.23497 1.01248 0.97231 0.82704 1.85865 1.85108 1.25068 1.28518 1.18700 1.07930 0.83812 0.93869 1.20809 1.06382 0.94816 0.97290 1.20914 1.03681 0.95221 0.97532 1.17973 0.91188 0.93775 0.92030 1.19707 1.35618 0.97043 1.00606 0.90747 1.26697 0.91929 1.05581 0.93700 1.69882 1.25837 1.39795 1.10308 0.85223 0.79589 0.76211 0.78864 1.18931 1.19028 1.18372 1.20793 1.10158 0.93185 0.98348 1.19898 1.04296 0.95902 0.94213 0.89401 0.90414 0.88531 0.87642 0.89035 0.87783 0.88289 0.92802 0.84033 0.92682 0.88625 0.76728 0.91797 0.91613 0.86065 0.87477 0.90247 0.87424 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.39 71.24 0.74 -0.24 16 2 C 0.02 0.31 7.33 43.58 0.32 0.63 16 3 N -0.40 -9.41 12.07 -49.55 -0.60 -10.01 16 4 O 0.08 1.59 11.20 71.53 0.80 2.39 16 5 C -0.01 -0.14 7.49 25.04 0.19 0.05 16 6 C -0.07 -0.59 10.25 71.23 0.73 0.14 16 7 C -0.21 -3.36 5.83 -19.73 -0.12 -3.48 16 8 C 0.14 1.66 5.93 85.56 0.51 2.17 16 9 N -0.68 -9.48 6.36 -517.93 -3.29 -12.77 16 10 C 0.04 0.56 5.35 86.30 0.46 1.02 16 11 C 0.13 2.62 3.45 30.60 0.11 2.73 16 12 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 13 O -0.56 -13.22 13.17 -144.37 -1.90 -15.12 16 14 C 0.03 0.80 4.37 71.98 0.31 1.11 16 15 O -0.33 -12.61 10.09 -85.36 -0.86 -13.47 16 16 C 0.00 0.03 6.71 22.78 0.15 0.19 16 17 C -0.17 -7.85 8.96 22.11 0.20 -7.65 16 18 C -0.15 -7.97 8.64 22.48 0.19 -7.77 16 19 C 0.05 2.84 5.57 -21.28 -0.12 2.72 16 20 C -0.50 -26.94 9.04 23.40 0.21 -26.73 16 21 H 0.07 3.87 7.91 -2.91 -0.02 3.85 16 22 C 0.03 1.74 5.13 85.23 0.44 2.18 16 23 N -0.83 -42.97 10.97 21.82 0.24 -42.73 16 24 Si 0.98 37.84 29.60 68.60 2.03 39.87 16 25 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 26 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 27 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 28 C -0.21 -10.22 9.74 22.49 0.22 -10.00 16 29 C -0.12 -5.74 9.92 22.11 0.22 -5.52 16 30 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.10 0.85 7.65 -2.39 -0.02 0.83 16 33 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.78 8.06 -2.38 -0.02 0.76 16 36 H 0.10 0.90 8.08 -2.39 -0.02 0.88 16 37 H 0.05 0.53 7.65 -2.39 -0.02 0.52 16 38 H 0.34 5.22 8.72 -89.69 -0.78 4.44 16 39 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.38 6.54 9.05 -74.06 -0.67 5.87 16 42 H 0.06 1.66 7.64 -2.39 -0.02 1.64 16 43 H 0.07 1.63 7.66 -2.39 -0.02 1.61 16 44 H 0.12 4.62 6.27 -2.91 -0.02 4.60 16 45 H 0.11 5.74 6.18 -2.91 -0.02 5.72 16 46 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 47 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 48 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -68.58 405.13 0.73 -67.85 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: -0.45 Total: 32.44 kcal Atomic # 6 Polarization: -53.23 SS G_CDS: 4.77 Total: -48.46 kcal Atomic # 7 Polarization: -61.85 SS G_CDS: -3.65 Total: -65.50 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -1.96 Total: -26.20 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Total: -68.58 0.73 -67.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000557222256.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.491 kcal (2) G-P(sol) polarization free energy of solvation -68.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds