Wall clock time and date at job start Sat Apr 11 2020 07:49:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41372 * 126.79659 * 2 1 4 4 C 1.35451 * 103.98737 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.78361 * 179.97438 * 4 3 2 6 6 C 1.52990 * 109.47240 * 89.99899 * 5 4 3 7 7 N 1.46901 * 109.47408 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00299 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47017 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47020 * 60.00213 * 9 8 7 11 11 O 1.42900 * 109.47151 * 299.99920 * 9 8 7 12 12 C 1.53002 * 109.47025 * 180.02562 * 9 8 7 13 13 O 1.42895 * 109.46981 * 185.00144 * 12 9 8 14 14 C 1.35678 * 116.99997 * 180.02562 * 13 12 9 15 15 C 1.39305 * 119.81904 * 180.02562 * 14 13 12 16 16 C 1.36438 * 120.18360 * 179.71525 * 15 14 13 17 17 C 1.40829 * 119.81200 * 0.27972 * 16 15 14 18 18 C 1.41223 * 120.18048 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99992 * 335.14278 * 18 17 16 20 20 C 1.39886 * 120.00282 * 155.13982 * 18 17 16 21 21 N 1.30885 * 119.99755 * 342.15824 * 20 18 17 22 22 Si 1.86800 * 120.00131 * 162.15578 * 20 18 17 23 23 H 1.48502 * 109.47092 * 94.65822 * 22 20 18 24 24 H 1.48501 * 109.47092 * 214.65617 * 22 20 18 25 25 H 1.48497 * 109.47284 * 334.65885 * 22 20 18 26 26 C 1.40828 * 119.64615 * 359.97438 * 17 16 15 27 27 C 1.36442 * 119.80860 * 359.97438 * 26 17 16 28 28 O 1.34050 * 106.44112 * 0.24096 * 4 3 2 29 29 N 1.20925 * 111.56447 * 359.56520 * 28 4 3 30 30 H 1.08995 * 109.47091 * 90.00503 * 1 2 3 31 31 H 1.09004 * 109.47075 * 209.99942 * 1 2 3 32 32 H 1.08990 * 109.47648 * 330.00110 * 1 2 3 33 33 H 1.08007 * 128.01122 * 0.03450 * 3 2 1 34 34 H 1.09005 * 109.46708 * 329.99868 * 5 4 3 35 35 H 1.09003 * 109.47232 * 210.00006 * 5 4 3 36 36 H 1.08996 * 109.47386 * 60.00147 * 6 5 4 37 37 H 1.09003 * 109.47095 * 300.00191 * 6 5 4 38 38 H 1.00898 * 110.99463 * 303.95515 * 7 6 5 39 39 H 1.09007 * 109.46523 * 59.99766 * 8 7 6 40 40 H 1.08998 * 109.47110 * 299.99887 * 8 7 6 41 41 H 0.96699 * 114.00658 * 300.00074 * 11 9 8 42 42 H 1.08999 * 109.46877 * 65.00196 * 12 9 8 43 43 H 1.08996 * 109.46840 * 305.00499 * 12 9 8 44 44 H 1.07998 * 119.90702 * 359.97438 * 15 14 13 45 45 H 1.08003 * 120.09720 * 180.29575 * 16 15 14 46 46 H 0.96996 * 120.00147 * 179.97438 * 21 20 18 47 47 H 1.07994 * 120.10143 * 180.02562 * 26 17 16 48 48 H 1.07998 * 119.91122 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3538 1.1321 0.0000 4 6 3.6024 0.6070 -0.0006 5 6 4.9021 1.3697 -0.0014 6 6 5.3427 1.6281 1.4407 7 7 6.6094 2.3721 1.4400 8 6 7.0638 2.6394 2.8112 9 6 8.3829 3.4135 2.7695 10 1 8.2336 4.3576 2.2457 11 8 9.3684 2.6387 2.0835 12 6 8.8565 3.6913 4.1976 13 8 10.0249 4.5131 4.1605 14 6 10.5764 4.8539 5.3524 15 6 11.7164 5.6538 5.3847 16 6 12.2737 6.0058 6.5793 17 6 11.6966 5.5533 7.7816 18 6 12.2668 5.9133 9.0224 19 1 13.3138 6.1719 9.0809 20 6 11.4755 5.9352 10.1757 21 7 10.1711 5.9704 10.0738 22 14 12.2804 5.9143 11.8613 23 1 12.4288 7.3065 12.3563 24 1 11.4334 5.1412 12.8047 25 1 13.6188 5.2787 11.7628 26 6 10.5473 4.7405 7.7399 27 6 10.0017 4.3985 6.5370 28 8 3.4537 -0.7252 -0.0063 29 7 2.2868 -1.0423 -0.0006 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 2.0708 2.1744 0.0005 34 1 4.7647 2.3211 -0.5153 35 1 5.6657 0.7860 -0.5156 36 1 5.4801 0.6768 1.9547 37 1 4.5791 2.2118 1.9549 38 1 7.3165 1.8815 0.9135 39 1 7.2134 1.6951 3.3348 40 1 6.3119 3.2300 3.3345 41 1 9.5526 1.7832 2.4949 42 1 9.0908 2.7487 4.6924 43 1 8.0684 4.2047 4.7483 44 1 12.1578 5.9997 4.4618 45 1 13.1548 6.6300 6.6029 46 1 9.6223 5.9852 10.8735 47 1 10.0985 4.3897 8.6574 48 1 9.1201 3.7756 6.5031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563011906.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:24 Heat of formation + Delta-G solvation = -17.973533 kcal Electronic energy + Delta-G solvation = -28015.319054 eV Core-core repulsion = 23845.285699 eV Total energy + Delta-G solvation = -4170.033354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.30251 -39.16785 -38.04690 -36.60165 -35.90435 -35.16172 -33.63577 -33.35409 -30.90694 -29.66987 -29.36028 -29.10840 -28.47635 -25.45663 -24.47054 -23.52056 -22.79464 -22.02360 -20.93982 -20.39271 -20.37054 -17.99827 -17.67301 -17.37437 -17.12102 -16.63349 -16.56932 -15.90694 -15.40509 -15.23099 -14.92840 -14.60985 -14.08487 -14.05800 -13.94063 -13.82128 -13.67062 -13.46215 -13.33863 -12.99514 -12.78870 -12.51672 -12.42244 -12.20117 -12.01633 -11.89911 -11.76353 -11.45488 -11.32710 -11.13739 -11.05705 -10.86766 -10.59243 -10.41031 -10.14710 -9.91826 -9.81546 -9.73543 -9.38420 -9.02674 -8.85416 -7.67391 -7.02753 -6.74761 -4.26835 1.04695 1.81694 2.64645 2.75108 2.94760 3.06778 3.10991 3.20082 3.46750 3.78597 3.93654 3.98269 4.24992 4.36183 4.49324 4.55048 4.60048 4.68242 4.80519 4.91604 4.92626 4.99875 5.01190 5.04880 5.12092 5.28065 5.32158 5.34433 5.41701 5.49766 5.49896 5.62857 5.66149 5.69813 6.02730 6.08002 6.26958 6.50604 6.70122 6.87541 6.98901 7.05098 7.26196 7.38885 7.54063 7.57606 7.88336 7.88438 7.98551 8.13736 8.42750 8.63302 8.88579 8.97493 10.20174 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.001416 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.378459 B =19771.123689 C =20899.356893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.015 3.985 3 C -0.230 4.230 4 C -0.022 4.022 5 C -0.039 4.039 6 C 0.062 3.938 7 N -0.682 5.682 8 C 0.032 3.968 9 C 0.113 3.887 10 H 0.115 0.885 11 O -0.550 6.550 12 C 0.039 3.961 13 O -0.318 6.318 14 C -0.011 4.011 15 C -0.111 4.111 16 C -0.196 4.196 17 C 0.087 3.913 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.801 5.801 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.134 4.134 27 C -0.175 4.175 28 O 0.098 5.902 29 N -0.368 5.368 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.172 0.828 34 H 0.109 0.891 35 H 0.090 0.910 36 H 0.036 0.964 37 H 0.079 0.921 38 H 0.351 0.649 39 H 0.037 0.963 40 H 0.086 0.914 41 H 0.370 0.630 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.279 0.721 47 H 0.120 0.880 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.891 -9.878 -16.619 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.144 4.144 3 C -0.252 4.252 4 C -0.086 4.086 5 C -0.077 4.077 6 C -0.068 4.068 7 N -0.315 5.315 8 C -0.098 4.098 9 C 0.053 3.947 10 H 0.133 0.867 11 O -0.355 6.355 12 C -0.038 4.038 13 O -0.233 6.233 14 C -0.054 4.054 15 C -0.130 4.130 16 C -0.215 4.215 17 C 0.085 3.915 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.141 4.141 21 N -0.427 5.427 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.201 1.201 25 H -0.185 1.185 26 C -0.153 4.153 27 C -0.194 4.194 28 O 0.032 5.968 29 N -0.073 5.073 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.190 0.810 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.170 0.830 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.216 0.784 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.138 0.862 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.559 -9.996 -17.111 25.824 hybrid contribution 0.119 -0.536 1.824 1.905 sum -16.440 -10.532 -15.287 24.797 Atomic orbital electron populations 1.20176 0.85907 1.03886 1.03419 1.23642 0.99136 0.88873 1.02745 1.22468 0.91166 1.01246 1.10274 1.24441 0.98343 0.83710 1.02137 1.20134 0.89864 0.99174 0.98567 1.21926 0.92974 0.96898 0.94998 1.60277 1.05699 1.51511 1.14009 1.22539 0.97757 0.99575 0.89928 1.21956 0.85434 0.95497 0.91778 0.86709 1.86644 1.60550 1.33684 1.54589 1.23083 0.88911 0.95063 0.96787 1.85861 1.41369 1.66924 1.29180 1.18599 0.98009 1.05791 0.82986 1.19617 0.95414 1.00604 0.97389 1.20609 1.03263 1.05783 0.91864 1.17600 0.91710 0.89845 0.92369 1.19473 0.97065 1.41137 0.91643 0.90482 1.25871 0.94536 0.92327 1.01407 1.69841 1.05230 1.36178 1.31459 0.86340 0.80410 0.79054 0.81153 1.19623 1.20148 1.18465 1.20923 0.98876 0.99710 0.95840 1.20592 1.00981 1.04624 0.93158 1.84829 1.21645 1.22868 1.67494 1.73863 0.89321 1.24184 1.19979 0.90131 0.90543 0.89913 0.81009 0.87322 0.89179 0.94565 0.90295 0.82980 0.94455 0.89550 0.78383 0.93031 0.92231 0.88450 0.88180 0.91031 0.86200 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.47 36.01 0.38 -0.02 16 2 C 0.01 0.12 7.33 -82.10 -0.60 -0.48 16 3 C -0.23 -1.64 11.06 -39.38 -0.44 -2.07 16 4 C -0.02 -0.17 6.74 -35.30 -0.24 -0.40 16 5 C -0.04 -0.21 6.04 -27.89 -0.17 -0.38 16 6 C 0.06 0.40 5.67 -3.83 -0.02 0.38 16 7 N -0.68 -5.31 6.50 -113.78 -0.74 -6.05 16 8 C 0.03 0.28 5.39 -3.82 -0.02 0.26 16 9 C 0.11 1.32 3.52 -26.73 -0.09 1.23 16 10 H 0.12 1.48 8.14 -51.93 -0.42 1.06 16 11 O -0.55 -6.62 12.64 -40.11 -0.51 -7.12 16 12 C 0.04 0.58 4.36 37.16 0.16 0.74 16 13 O -0.32 -6.38 10.09 -23.62 -0.24 -6.62 16 14 C -0.01 -0.24 6.71 -38.78 -0.26 -0.51 16 15 C -0.11 -2.60 9.92 -39.83 -0.40 -3.00 16 16 C -0.20 -4.82 9.74 -39.25 -0.38 -5.20 16 17 C 0.09 2.31 5.57 -106.80 -0.60 1.72 16 18 C -0.46 -12.24 9.04 -37.83 -0.34 -12.58 16 19 H 0.08 1.95 7.91 -52.48 -0.41 1.54 16 20 C 0.08 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.60 10.97 55.54 0.61 -19.99 16 22 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 23 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 26 C -0.13 -3.45 8.64 -39.25 -0.34 -3.79 16 27 C -0.17 -4.04 8.97 -39.83 -0.36 -4.40 16 28 O 0.10 0.96 11.20 17.15 0.19 1.15 16 29 N -0.37 -3.93 12.07 33.42 0.40 -3.53 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.17 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.35 2.60 8.12 -39.29 -0.32 2.28 16 39 H 0.04 0.30 8.14 -51.92 -0.42 -0.12 16 40 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.37 3.23 9.05 45.56 0.41 3.64 16 42 H 0.05 0.73 7.63 -51.93 -0.40 0.34 16 43 H 0.06 0.87 7.66 -51.93 -0.40 0.48 16 44 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 45 H 0.10 2.29 8.06 -52.48 -0.42 1.87 16 46 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 47 H 0.12 3.17 6.18 -52.49 -0.32 2.84 16 48 H 0.09 1.88 6.27 -52.49 -0.33 1.55 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -31.15 405.39 -9.40 -40.56 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -6.40 Total: 8.68 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -3.80 Total: -26.71 kcal Atomic # 7 Polarization: -29.84 SS G_CDS: 0.27 Total: -29.57 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.55 Total: -12.59 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -31.15 -9.40 -40.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563011906.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.582 kcal (2) G-P(sol) polarization free energy of solvation -31.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds