Wall clock time and date at job start Sat Apr 11 2020 07:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.41372 * 126.79659 * 2 1 4 4 C 1.35451 * 103.98737 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.78361 * 179.97438 * 4 3 2 6 6 C 1.52990 * 109.47240 * 89.99899 * 5 4 3 7 7 N 1.46901 * 109.47408 * 180.02562 * 6 5 4 8 8 C 1.46904 * 111.00299 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47017 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.47020 * 60.00213 * 9 8 7 11 11 O 1.42900 * 109.47151 * 299.99920 * 9 8 7 12 12 C 1.53002 * 109.47025 * 180.02562 * 9 8 7 13 13 O 1.42895 * 109.46981 * 185.00144 * 12 9 8 14 14 C 1.35678 * 116.99997 * 180.02562 * 13 12 9 15 15 C 1.39305 * 119.81904 * 180.02562 * 14 13 12 16 16 C 1.36438 * 120.18360 * 179.71525 * 15 14 13 17 17 C 1.40829 * 119.81200 * 0.27972 * 16 15 14 18 18 C 1.41223 * 120.18048 * 180.02562 * 17 16 15 19 19 H 1.08009 * 119.99992 * 335.14278 * 18 17 16 20 20 C 1.39886 * 120.00282 * 155.13982 * 18 17 16 21 21 N 1.30885 * 119.99755 * 342.15824 * 20 18 17 22 22 Si 1.86800 * 120.00131 * 162.15578 * 20 18 17 23 23 H 1.48502 * 109.47092 * 94.65822 * 22 20 18 24 24 H 1.48501 * 109.47092 * 214.65617 * 22 20 18 25 25 H 1.48497 * 109.47284 * 334.65885 * 22 20 18 26 26 C 1.40828 * 119.64615 * 359.97438 * 17 16 15 27 27 C 1.36442 * 119.80860 * 359.97438 * 26 17 16 28 28 O 1.34050 * 106.44112 * 0.24096 * 4 3 2 29 29 N 1.20925 * 111.56447 * 359.56520 * 28 4 3 30 30 H 1.08995 * 109.47091 * 90.00503 * 1 2 3 31 31 H 1.09004 * 109.47075 * 209.99942 * 1 2 3 32 32 H 1.08990 * 109.47648 * 330.00110 * 1 2 3 33 33 H 1.08007 * 128.01122 * 0.03450 * 3 2 1 34 34 H 1.09005 * 109.46708 * 329.99868 * 5 4 3 35 35 H 1.09003 * 109.47232 * 210.00006 * 5 4 3 36 36 H 1.08996 * 109.47386 * 60.00147 * 6 5 4 37 37 H 1.09003 * 109.47095 * 300.00191 * 6 5 4 38 38 H 1.00898 * 110.99463 * 303.95515 * 7 6 5 39 39 H 1.09007 * 109.46523 * 59.99766 * 8 7 6 40 40 H 1.08998 * 109.47110 * 299.99887 * 8 7 6 41 41 H 0.96699 * 114.00658 * 300.00074 * 11 9 8 42 42 H 1.08999 * 109.46877 * 65.00196 * 12 9 8 43 43 H 1.08996 * 109.46840 * 305.00499 * 12 9 8 44 44 H 1.07998 * 119.90702 * 359.97438 * 15 14 13 45 45 H 1.08003 * 120.09720 * 180.29575 * 16 15 14 46 46 H 0.96996 * 120.00147 * 179.97438 * 21 20 18 47 47 H 1.07994 * 120.10143 * 180.02562 * 26 17 16 48 48 H 1.07998 * 119.91122 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3538 1.1321 0.0000 4 6 3.6024 0.6070 -0.0006 5 6 4.9021 1.3697 -0.0014 6 6 5.3427 1.6281 1.4407 7 7 6.6094 2.3721 1.4400 8 6 7.0638 2.6394 2.8112 9 6 8.3829 3.4135 2.7695 10 1 8.2336 4.3576 2.2457 11 8 9.3684 2.6387 2.0835 12 6 8.8565 3.6913 4.1976 13 8 10.0249 4.5131 4.1605 14 6 10.5764 4.8539 5.3524 15 6 11.7164 5.6538 5.3847 16 6 12.2737 6.0058 6.5793 17 6 11.6966 5.5533 7.7816 18 6 12.2668 5.9133 9.0224 19 1 13.3138 6.1719 9.0809 20 6 11.4755 5.9352 10.1757 21 7 10.1711 5.9704 10.0738 22 14 12.2804 5.9143 11.8613 23 1 12.4288 7.3065 12.3563 24 1 11.4334 5.1412 12.8047 25 1 13.6188 5.2787 11.7628 26 6 10.5473 4.7405 7.7399 27 6 10.0017 4.3985 6.5370 28 8 3.4537 -0.7252 -0.0063 29 7 2.2868 -1.0423 -0.0006 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 2.0708 2.1744 0.0005 34 1 4.7647 2.3211 -0.5153 35 1 5.6657 0.7860 -0.5156 36 1 5.4801 0.6768 1.9547 37 1 4.5791 2.2118 1.9549 38 1 7.3165 1.8815 0.9135 39 1 7.2134 1.6951 3.3348 40 1 6.3119 3.2300 3.3345 41 1 9.5526 1.7832 2.4949 42 1 9.0908 2.7487 4.6924 43 1 8.0684 4.2047 4.7483 44 1 12.1578 5.9997 4.4618 45 1 13.1548 6.6300 6.6029 46 1 9.6223 5.9852 10.8735 47 1 10.0985 4.3897 8.6574 48 1 9.1201 3.7756 6.5031 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563011906.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:23 Heat of formation + Delta-G solvation = -38.387843 kcal Electronic energy + Delta-G solvation = -28016.204284 eV Core-core repulsion = 23845.285699 eV Total energy + Delta-G solvation = -4170.918585 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.92071 -40.65236 -39.19226 -37.93692 -36.90065 -35.72810 -35.19901 -34.26719 -31.93540 -31.50476 -30.89435 -29.61727 -29.43304 -26.89547 -25.81556 -24.15125 -23.48614 -23.20935 -22.55146 -21.99227 -20.94404 -19.26764 -18.72117 -18.63553 -18.19696 -17.71578 -17.55633 -16.99244 -16.69656 -16.11930 -15.94308 -15.73696 -15.44215 -15.32459 -14.98330 -14.73378 -14.26784 -14.21432 -14.15538 -14.04857 -13.91478 -13.78437 -13.60012 -13.43871 -13.21042 -13.02794 -12.82948 -12.74888 -12.68643 -12.43902 -12.30523 -11.92726 -11.81473 -11.69829 -11.58486 -11.23692 -11.02593 -10.96566 -10.85823 -10.34872 -9.56472 -9.46004 -8.90273 -8.60150 -6.22312 0.46026 0.94063 1.04835 1.25380 1.39959 1.49528 1.55782 2.09685 2.23061 2.42271 2.72620 3.19794 3.28634 3.47854 3.60136 3.70723 3.94760 3.97497 4.03144 4.07600 4.10097 4.19707 4.29883 4.31347 4.39135 4.40960 4.49077 4.49914 4.60872 4.66658 4.71700 4.83421 4.88655 4.91076 5.00000 5.02972 5.04739 5.11391 5.15513 5.25206 5.37195 5.52675 5.66660 5.89326 5.97375 6.06595 6.24265 6.40229 6.56478 6.77908 6.82486 6.95578 7.10792 7.28620 8.36857 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.018583 B = 0.001416 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.378459 B =19771.123689 C =20899.356893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.007 3.993 3 C -0.232 4.232 4 C -0.024 4.024 5 C -0.031 4.031 6 C 0.067 3.933 7 N -0.685 5.685 8 C 0.041 3.959 9 C 0.126 3.874 10 H 0.103 0.897 11 O -0.564 6.564 12 C 0.029 3.971 13 O -0.328 6.328 14 C -0.001 4.001 15 C -0.122 4.122 16 C -0.205 4.205 17 C 0.053 3.947 18 C -0.500 4.500 19 H 0.075 0.925 20 C 0.035 3.965 21 N -0.832 5.832 22 Si 0.980 3.020 23 H -0.264 1.264 24 H -0.267 1.267 25 H -0.260 1.260 26 C -0.154 4.154 27 C -0.175 4.175 28 O 0.077 5.923 29 N -0.406 5.406 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.197 0.803 34 H 0.121 0.879 35 H 0.098 0.902 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.354 0.646 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.384 0.616 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.118 0.882 45 H 0.109 0.891 46 H 0.287 0.713 47 H 0.106 0.894 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.784 -9.952 -17.109 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.152 4.152 3 C -0.253 4.253 4 C -0.088 4.088 5 C -0.069 4.069 6 C -0.063 4.063 7 N -0.318 5.318 8 C -0.089 4.089 9 C 0.066 3.934 10 H 0.121 0.879 11 O -0.370 6.370 12 C -0.047 4.047 13 O -0.243 6.243 14 C -0.045 4.045 15 C -0.141 4.141 16 C -0.224 4.224 17 C 0.051 3.949 18 C -0.530 4.530 19 H 0.093 0.907 20 C -0.179 4.179 21 N -0.459 5.459 22 Si 0.801 3.199 23 H -0.188 1.188 24 H -0.191 1.191 25 H -0.183 1.183 26 C -0.174 4.174 27 C -0.194 4.194 28 O 0.014 5.986 29 N -0.115 5.115 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.121 0.879 33 H 0.214 0.786 34 H 0.139 0.861 35 H 0.116 0.884 36 H 0.050 0.950 37 H 0.097 0.903 38 H 0.174 0.826 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.233 0.767 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.127 0.873 46 H 0.097 0.903 47 H 0.124 0.876 48 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -17.444 -10.082 -17.626 26.770 hybrid contribution 0.318 -0.536 1.798 1.903 sum -17.126 -10.619 -15.829 25.625 Atomic orbital electron populations 1.20321 0.84019 1.04707 1.04403 1.24254 1.00556 0.88878 1.01467 1.22835 0.90718 1.02094 1.09686 1.24832 0.99359 0.83065 1.01528 1.20140 0.89176 0.99531 0.98079 1.21877 0.92310 0.96474 0.95610 1.60247 1.06187 1.51992 1.13357 1.22393 0.96078 0.99648 0.90762 1.21798 0.86604 0.95639 0.89327 0.87929 1.86611 1.60812 1.34694 1.54899 1.23481 0.87163 0.94655 0.99425 1.85861 1.43137 1.67687 1.27645 1.18722 0.97481 1.04406 0.83879 1.19894 0.95788 1.00659 0.97733 1.20801 1.03686 1.05971 0.91981 1.17961 0.92726 0.90874 0.93314 1.19720 0.97347 1.43134 0.92818 0.90674 1.26698 0.94936 0.91297 1.04931 1.69887 1.06492 1.36575 1.32928 0.85225 0.79288 0.79327 0.76060 1.18849 1.19118 1.18331 1.20901 0.99433 1.00713 0.96326 1.20807 1.01613 1.04561 0.92433 1.84779 1.21562 1.24088 1.68183 1.73859 0.89900 1.25638 1.22062 0.88981 0.90857 0.87944 0.78609 0.86103 0.88356 0.94961 0.90305 0.82649 0.93376 0.89184 0.76689 0.91970 0.91807 0.86423 0.87311 0.90265 0.87586 0.86307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.47 71.24 0.75 0.05 16 2 C 0.01 0.11 7.33 43.58 0.32 0.43 16 3 C -0.23 -2.92 11.06 22.40 0.25 -2.67 16 4 C -0.02 -0.33 6.74 25.04 0.17 -0.16 16 5 C -0.03 -0.28 6.04 29.84 0.18 -0.10 16 6 C 0.07 0.73 5.67 86.30 0.49 1.22 16 7 N -0.68 -9.08 6.50 -513.89 -3.34 -12.42 16 8 C 0.04 0.62 5.39 86.30 0.47 1.09 16 9 C 0.13 2.69 3.52 30.59 0.11 2.80 16 10 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 11 O -0.56 -12.38 12.64 -144.31 -1.82 -14.20 16 12 C 0.03 0.81 4.36 71.98 0.31 1.13 16 13 O -0.33 -12.64 10.09 -85.29 -0.86 -13.50 16 14 C 0.00 -0.04 6.71 22.79 0.15 0.11 16 15 C -0.12 -5.64 9.92 22.11 0.22 -5.42 16 16 C -0.20 -10.22 9.74 22.48 0.22 -10.00 16 17 C 0.05 2.91 5.57 -21.28 -0.12 2.79 16 18 C -0.50 -27.11 9.04 23.40 0.21 -26.90 16 19 H 0.08 3.92 7.91 -2.91 -0.02 3.90 16 20 C 0.04 1.77 5.13 85.23 0.44 2.21 16 21 N -0.83 -43.42 10.97 21.82 0.24 -43.18 16 22 Si 0.98 38.13 29.60 68.60 2.03 40.16 16 23 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 24 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 26 C -0.15 -8.08 8.64 22.48 0.19 -7.88 16 27 C -0.18 -8.04 8.97 22.11 0.20 -7.84 16 28 O 0.08 1.50 11.20 71.54 0.80 2.30 16 29 N -0.41 -8.67 12.07 -49.58 -0.60 -9.27 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.20 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.12 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.35 4.43 8.12 -89.70 -0.73 3.70 16 39 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.38 5.83 9.05 -74.06 -0.67 5.16 16 42 H 0.06 1.62 7.63 -2.39 -0.02 1.60 16 43 H 0.06 1.74 7.66 -2.39 -0.02 1.73 16 44 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 45 H 0.11 5.05 8.06 -2.91 -0.02 5.03 16 46 H 0.29 13.49 8.30 -92.71 -0.77 12.72 16 47 H 0.11 5.76 6.18 -2.91 -0.02 5.75 16 48 H 0.12 4.67 6.27 -2.91 -0.02 4.65 16 Total: -1.00 -68.09 405.39 0.59 -67.50 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: -0.41 Total: 31.76 kcal Atomic # 6 Polarization: -53.70 SS G_CDS: 4.55 Total: -49.15 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -3.70 Total: -64.87 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.88 Total: -25.40 kcal Atomic # 14 Polarization: 38.13 SS G_CDS: 2.03 Total: 40.16 kcal Total: -68.09 0.59 -67.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563011906.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.113 kcal (2) G-P(sol) polarization free energy of solvation -68.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds