Wall clock time and date at job start Sat Apr 11 2020 07:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.46883 * 2 1 4 4 C 1.38320 * 119.92765 * 265.00041 * 3 2 1 5 5 C 1.38076 * 120.07399 * 179.97438 * 4 3 2 6 6 C 1.38951 * 119.92522 * 0.02562 * 5 4 3 7 7 N 1.39727 * 120.07138 * 180.02562 * 6 5 4 8 8 C 1.34771 * 120.00121 * 326.66209 * 7 6 5 9 9 O 1.21376 * 120.00280 * 354.72967 * 8 7 6 10 10 C 1.49360 * 120.00052 * 174.72201 * 8 7 6 11 11 O 1.21363 * 119.99497 * 0.02562 * 10 8 7 12 12 N 1.34771 * 120.00052 * 180.02562 * 10 8 7 13 13 C 1.47426 * 125.65110 * 359.96354 * 12 10 8 14 14 C 1.54911 * 104.83149 * 204.16526 * 13 12 10 15 15 C 1.55162 * 101.57993 * 322.98739 * 14 13 12 16 16 O 1.42900 * 110.72031 * 277.14161 * 15 14 13 17 17 C 1.50699 * 110.87054 * 153.94093 * 15 14 13 18 18 H 1.07999 * 119.99894 * 2.54161 * 17 15 14 19 19 C 1.37877 * 119.99925 * 182.54598 * 17 15 14 20 20 N 1.31516 * 120.00086 * 359.97438 * 19 17 15 21 21 Si 1.86798 * 119.99879 * 179.97438 * 19 17 15 22 22 H 1.48506 * 109.47135 * 90.00315 * 21 19 17 23 23 H 1.48503 * 109.46991 * 209.99638 * 21 19 17 24 24 H 1.48499 * 109.47403 * 330.00195 * 21 19 17 25 25 C 1.47023 * 125.64737 * 180.02562 * 12 10 8 26 26 C 1.38906 * 119.85058 * 0.27675 * 6 5 4 27 27 C 1.38123 * 119.92180 * 359.44951 * 26 6 5 28 28 C 1.50692 * 119.96206 * 180.25560 * 27 26 6 29 29 H 1.09003 * 109.47078 * 299.99601 * 1 2 3 30 30 H 1.09006 * 109.47315 * 59.99736 * 1 2 3 31 31 H 1.09001 * 109.47637 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.46607 * 240.00530 * 2 1 3 33 33 H 1.08992 * 109.47117 * 120.00100 * 2 1 3 34 34 H 1.07998 * 119.95970 * 0.02562 * 4 3 2 35 35 H 1.08004 * 120.03188 * 180.02562 * 5 4 3 36 36 H 0.96999 * 119.99685 * 146.66187 * 7 6 5 37 37 H 1.09000 * 110.36301 * 322.99866 * 13 12 10 38 38 H 1.09000 * 110.36750 * 85.32158 * 13 12 10 39 39 H 1.08998 * 111.00164 * 204.91634 * 14 13 12 40 40 H 1.08992 * 111.00865 * 81.06238 * 14 13 12 41 41 H 0.96697 * 114.00229 * 174.97629 * 16 15 14 42 42 H 0.96993 * 120.00313 * 179.97438 * 20 19 17 43 43 H 1.08999 * 109.88484 * 59.48951 * 25 12 10 44 44 H 1.08999 * 109.88570 * 298.32390 * 25 12 10 45 45 H 1.07997 * 120.03630 * 179.70019 * 26 6 5 46 46 H 1.09007 * 109.46996 * 270.27213 * 28 27 26 47 47 H 1.08996 * 109.47563 * 30.27329 * 28 27 26 48 48 H 1.09000 * 109.47759 * 150.27688 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3608 2.0366 -1.1942 5 6 2.8208 3.3385 -1.1978 6 6 2.9540 4.0299 0.0001 7 7 3.4187 5.3476 0.0001 8 6 4.3252 5.7424 -0.9158 9 8 4.8093 4.9323 -1.6790 10 6 4.7338 7.1770 -0.9918 11 8 4.2499 7.9870 -0.2285 12 7 5.6399 7.5719 -1.9080 13 6 6.3047 6.6976 -2.8914 14 6 7.6236 7.4293 -3.2447 15 6 7.1700 8.9130 -3.2311 16 8 6.5670 9.2689 -4.4768 17 6 8.3286 9.8258 -2.9219 18 1 9.3184 9.4153 -2.7873 19 6 8.1249 11.1849 -2.8107 20 7 6.9196 11.6848 -2.9750 21 14 9.5609 12.3162 -2.4267 22 1 10.1900 12.7654 -3.6947 23 1 9.0721 13.4975 -1.6712 24 1 10.5621 11.5852 -1.6091 25 6 6.1301 8.9458 -2.0914 26 6 2.6292 3.4063 1.1981 27 6 2.1643 2.1057 1.1940 28 6 1.8062 1.4303 2.4926 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.2565 1.4988 -2.1249 35 1 3.0767 3.8188 -2.1306 36 1 3.0888 5.9782 0.6592 37 1 6.5175 5.7238 -2.4504 38 1 5.6834 6.5851 -3.7799 39 1 7.9789 7.1385 -4.2333 40 1 8.3864 7.2470 -2.4879 41 1 6.1973 10.1622 -4.4938 42 1 6.7762 12.6408 -2.8965 43 1 6.5982 9.2982 -1.1723 44 1 5.3029 9.6014 -2.3634 45 1 2.7362 3.9392 2.1313 46 1 2.6853 0.9266 2.8947 47 1 1.4570 2.1766 3.2061 48 1 1.0173 0.6990 2.3165 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592301008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:49:44 Heat of formation + Delta-G solvation = -94.504891 kcal Electronic energy + Delta-G solvation = -30148.244467 eV Core-core repulsion = 25974.892463 eV Total energy + Delta-G solvation = -4173.352003 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 346.173 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00425 -39.72755 -38.49334 -37.31607 -35.81844 -34.33721 -33.20412 -32.65595 -32.25118 -30.22927 -29.17466 -27.99747 -27.19096 -26.05670 -24.52978 -23.34165 -22.48923 -22.04560 -20.56131 -19.77287 -19.52295 -17.78081 -17.23709 -17.00501 -16.35305 -16.03907 -15.90199 -15.63223 -15.16821 -14.69593 -14.48786 -14.39000 -14.20948 -13.98972 -13.64789 -13.33374 -13.14402 -13.07220 -13.00379 -12.93051 -12.59404 -12.43519 -12.41193 -12.18165 -11.82862 -11.57106 -11.53689 -11.28617 -11.09920 -11.09394 -10.97604 -10.83089 -10.64494 -10.50432 -10.30710 -10.21034 -9.41451 -9.22885 -8.89823 -8.70542 -8.38611 -8.19284 -8.06759 -6.33865 -4.42077 0.96475 1.22669 1.75045 2.46293 3.18760 3.26364 3.29058 3.36510 3.64198 3.74332 4.23485 4.49647 4.51671 4.58507 4.74864 4.81754 4.94309 5.00206 5.08438 5.22152 5.25294 5.32778 5.35349 5.44457 5.52185 5.56068 5.61429 5.72140 5.77535 5.82681 5.85071 5.94218 5.98765 6.11873 6.18801 6.21233 6.37496 6.45682 6.48838 6.69003 6.73379 6.77419 6.86567 7.06214 7.14413 7.27249 7.68132 7.72688 7.90157 7.97389 8.29356 8.61620 9.25485 9.35203 10.74267 Molecular weight = 346.17amu Principal moments of inertia in cm(-1) A = 0.028645 B = 0.002081 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.251799 B =13453.177145 C =13876.853836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.101 4.101 4 C -0.094 4.094 5 C -0.122 4.122 6 C 0.149 3.851 7 N -0.651 5.651 8 C 0.512 3.488 9 O -0.495 6.495 10 C 0.508 3.492 11 O -0.535 6.535 12 N -0.572 5.572 13 C 0.097 3.903 14 C -0.120 4.120 15 C 0.248 3.752 16 O -0.583 6.583 17 C -0.536 4.536 18 H 0.068 0.932 19 C 0.070 3.930 20 N -0.896 5.896 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.098 3.902 26 C -0.142 4.142 27 C -0.066 4.066 28 C -0.117 4.117 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.125 0.875 35 H 0.135 0.865 36 H 0.422 0.578 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.384 0.616 42 H 0.271 0.729 43 H 0.074 0.926 44 H 0.072 0.928 45 H 0.126 0.874 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.270 -19.822 7.453 23.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.101 4.101 4 C -0.112 4.112 5 C -0.142 4.142 6 C 0.055 3.945 7 N -0.298 5.298 8 C 0.295 3.705 9 O -0.368 6.368 10 C 0.290 3.710 11 O -0.414 6.414 12 N -0.304 5.304 13 C -0.025 4.025 14 C -0.158 4.158 15 C 0.208 3.792 16 O -0.392 6.392 17 C -0.574 4.574 18 H 0.086 0.914 19 C -0.133 4.133 20 N -0.535 5.535 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.022 4.022 26 C -0.162 4.162 27 C -0.067 4.067 28 C -0.173 4.173 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.260 0.740 37 H 0.105 0.895 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.234 0.766 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.144 0.856 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.103 -20.335 7.154 24.248 hybrid contribution 0.380 1.770 0.691 1.938 sum -10.723 -18.565 7.845 22.829 Atomic orbital electron populations 1.21776 0.94880 1.01562 1.02323 1.20505 0.96038 0.92697 1.02784 1.19726 1.01334 0.96437 0.92641 1.20890 0.98402 0.94333 0.97598 1.21162 1.00238 0.95304 0.97508 1.17715 0.98151 0.84471 0.94147 1.43219 1.41788 1.10668 1.34128 1.20610 0.79182 0.89924 0.80822 1.90723 1.51885 1.54275 1.39956 1.19332 0.81591 0.87603 0.82516 1.90746 1.54982 1.53944 1.41747 1.48710 1.37697 1.12894 1.31088 1.22682 0.94269 0.94016 0.91556 1.22822 0.95242 0.95968 1.01813 1.19517 0.88807 0.90432 0.80485 1.86119 1.78813 1.38091 1.36194 1.21507 0.94749 0.91654 1.49525 0.91367 1.25084 0.96288 0.98359 0.93579 1.69634 1.20650 1.13917 1.49281 0.86374 0.81968 0.79874 0.78538 1.20332 1.20995 1.19680 1.23310 0.98486 0.78483 1.01963 1.20758 1.04098 0.95030 0.96310 1.19476 0.98806 0.93319 0.95053 1.20858 1.01859 1.00629 0.93990 0.92458 0.92489 0.92514 0.91127 0.90976 0.85704 0.84673 0.74029 0.89478 0.91200 0.90205 0.90425 0.76556 0.91903 0.90786 0.90984 0.85558 0.91110 0.91536 0.91032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.70 37.16 0.36 -0.55 16 2 C -0.08 -0.58 5.36 -27.88 -0.15 -0.73 16 3 C -0.10 -0.95 5.14 -104.58 -0.54 -1.49 16 4 C -0.09 -1.00 9.67 -39.61 -0.38 -1.38 16 5 C -0.12 -1.57 8.65 -39.38 -0.34 -1.91 16 6 C 0.15 1.90 6.28 -83.75 -0.53 1.37 16 7 N -0.65 -8.86 5.32 -10.29 -0.05 -8.92 16 8 C 0.51 8.47 7.59 -11.63 -0.09 8.38 16 9 O -0.50 -8.62 11.46 5.47 0.06 -8.56 16 10 C 0.51 9.89 7.91 -11.63 -0.09 9.80 16 11 O -0.54 -11.34 16.81 5.49 0.09 -11.25 16 12 N -0.57 -11.83 3.33 -171.06 -0.57 -12.40 16 13 C 0.10 1.83 6.05 -2.53 -0.02 1.82 16 14 C -0.12 -2.43 6.23 -24.58 -0.15 -2.59 16 15 C 0.25 5.92 0.85 -89.94 -0.08 5.85 16 16 O -0.58 -14.50 13.07 -35.23 -0.46 -14.96 16 17 C -0.54 -13.78 8.12 -34.44 -0.28 -14.06 16 18 H 0.07 1.73 7.78 -52.49 -0.41 1.32 16 19 C 0.07 1.80 5.28 -17.82 -0.09 1.70 16 20 N -0.90 -23.34 10.98 55.43 0.61 -22.73 16 21 Si 0.91 20.17 29.54 -169.99 -5.02 15.15 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 C 0.10 2.32 5.37 -3.07 -0.02 2.30 16 26 C -0.14 -1.50 9.62 -39.38 -0.38 -1.88 16 27 C -0.07 -0.62 5.88 -104.65 -0.62 -1.24 16 28 C -0.12 -0.78 9.21 36.00 0.33 -0.45 16 29 H 0.06 0.35 6.91 -51.93 -0.36 -0.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 33 H 0.07 0.44 6.98 -51.93 -0.36 0.08 16 34 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 35 H 0.14 1.90 6.42 -52.48 -0.34 1.57 16 36 H 0.42 5.08 8.30 -40.82 -0.34 4.74 16 37 H 0.09 1.54 6.16 -51.93 -0.32 1.22 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 40 H 0.08 1.50 8.04 -51.93 -0.42 1.09 16 41 H 0.38 9.72 7.26 45.56 0.33 10.05 16 42 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 43 H 0.07 1.86 7.81 -51.93 -0.41 1.46 16 44 H 0.07 1.82 7.98 -51.93 -0.41 1.41 16 45 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 46 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 47 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 48 H 0.07 0.40 5.42 -51.93 -0.28 0.12 16 LS Contribution 389.06 15.07 5.86 5.86 Total: -1.00 -28.71 389.06 -8.78 -37.49 By element: Atomic # 1 Polarization: 21.62 SS G_CDS: -6.25 Total: 15.37 kcal Atomic # 6 Polarization: 8.00 SS G_CDS: -3.05 Total: 4.95 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.02 Total: -44.05 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.31 Total: -34.77 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -28.71 -8.78 -37.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592301008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.018 kcal (2) G-P(sol) polarization free energy of solvation -28.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds